BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4119.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774176.1| hypothetical protein Hsero_0749 [Herbaspiril... 385 e-105 ref|ZP_08143250.1| hypothetical protein G1E_28637 [Pseudomonas s... 96 8e-18 ref|YP_001669087.1| hypothetical protein PputGB1_2857 [Pseudomon... 82 1e-13 ref|YP_004701610.1| hypothetical protein PPS_2169 [Pseudomonas p... 73 5e-11 ref|YP_004702978.1| hypothetical protein PPS_3553 [Pseudomonas p... 56 9e-06 >ref|YP_003774176.1| hypothetical protein Hsero_0749 [Herbaspirillum seropedicae SmR1] gb|ADJ62268.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 196/312 (62%), Positives = 241/312 (77%), Gaps = 1/312 (0%) Query: 22 MNNPSLNEEIRAALFQLREAHPHCHIHVLLDGNHPCFEGDPLHLHQLAKREIPANPIIVP 81 M+ +NE++RA LFQLRE HP H+H+LLDGNHPC + D LH+ +LAKR+IPA + VP Sbjct: 1 MSQSKVNEQLRAVLFQLREVHPRSHVHLLLDGNHPCADDDALHIARLAKRDIPAKAVPVP 60 Query: 82 RADYLHDPSICPALVTLHSPGDRGYPDDELFDLAIAHAWRRRASINGSYVAGWLVSEKPA 141 RAD++HDP+ICP+LVTL+SPGDRGYPD+ L DL+I HAWRRR SINGSYV GWLVSE PA Sbjct: 61 RADFVHDPAICPSLVTLYSPGDRGYPDELLLDLSIDHAWRRRDSINGSYVCGWLVSESPA 120 Query: 142 KEVAAHIAESCELFDLLNGRRRFLPLFEPHRLSLLANTDRKSFLHRWLGPISHWLWLDLN 201 ++A H+A +CELFD+L G RR LPLFEPHRLSL+A+ +SFL RWLGPISHWLWLD+ Sbjct: 121 HDIATHLARACELFDVLRGCRRVLPLFEPHRLSLVADAGLESFLRRWLGPISHWLWLDMQ 180 Query: 202 GQLNNLAAHDLNRDGTSPGEQLEQRDWMMQHRVADALLVAMAMQEAQHRLPSNPEIAIDA 261 G+L++LA ++L +G S E L QR W Q RVA+A LVAMAM +A LP++PE AIDA Sbjct: 181 GELHSLAVNEL-AEGISSKEHLSQRHWQAQQRVANARLVAMAMADAGIILPTHPETAIDA 239 Query: 262 SLKRAKARGLQRTEDLIFTALNDFSLSAGWADHLAAQWAIEQALVGERSLSKVMTTLPDE 321 SL+RA GLQRTEDL+F ALNDFS+S W H AA AI QA GE++LS++M L D Sbjct: 240 SLQRAGDLGLQRTEDLVFFALNDFSISRDWTAHPAAAKAIRQAQQGEQTLSELMCELSDN 299 Query: 322 ILNEIANNRPAD 333 L EIA +R AD Sbjct: 300 TLEEIAASRGAD 311 >ref|ZP_08143250.1| hypothetical protein G1E_28637 [Pseudomonas sp. TJI-51] gb|EGB95473.1| hypothetical protein G1E_28637 [Pseudomonas sp. TJI-51] Length = 307 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 131/280 (46%), Gaps = 17/280 (6%) Query: 43 PHCHIHVLLDGNHPCFEGDPLHLHQLAKREIPANPIIVPRADYLHDPSICPALVTLHSPG 102 P + +VL+D P +GDP L QL + + + VPR D H P + P LV L PG Sbjct: 16 PTLYSYVLVDPLAPEDKGDPALLAQLREALGASALMHVPRPDLAHVPHLHPVLVCLAVPG 75 Query: 103 DRGYPDDELFDLAIAHAWRRRASING-----SYVAGWLVSEKPAKEVAAHIAESCELFDL 157 P + +L RA++ G YV GW+ SE+PA ++AAH++ C L D Sbjct: 76 --ALPSRAILELTA------RAAVRGLFQPRRYVCGWVFSEQPAADIAAHLSCLCRLPDR 127 Query: 158 LNGRRRFLPLFEPHRLSLLANTDRKSFLHRWLGPISHWLWLDLNGQLNNLAAHDLNRDGT 217 F P+ EP RL LLA T ++ W PIS WL+L+ +GQL NL R Sbjct: 128 AQA-LSFYPVNEPIRLELLAATFKQGERAPWW-PISRWLFLNSSGQLLNLKGQSGRRCLL 185 Query: 218 SPGEQLEQRDWMMQHRVADAL--LVAMAMQEAQHRLPSNPEIAIDASLKRAKARGLQRTE 275 Q D + RV +L L A Q ++PS ++ A+A GL +E Sbjct: 186 PASAWRMQADGALVERVLRSLSALRAGVNNSFQCQIPSFAAGRAGNHIQEARALGLTDSE 245 Query: 276 DLIFTALNDFSLSAGWADHLAAQWAIEQALVGERSLSKVM 315 D++ AL+ + A + I+ A +R+L+ ++ Sbjct: 246 DIVVLALHQLCIHPQLTSLAAVRGLIDVACQEQRALAPLL 285 >ref|YP_001669087.1| hypothetical protein PputGB1_2857 [Pseudomonas putida GB-1] gb|ABY98751.1| hypothetical protein PputGB1_2857 [Pseudomonas putida GB-1] Length = 308 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 126/284 (44%), Gaps = 15/284 (5%) Query: 44 HCHIHVLLDGNHPCFEGDPLHLHQLAKREIPANPII--VPRADYLHDPSICPALVTLHSP 101 H H HVL+D + D L QL RE P + V RAD H P + P L L +P Sbjct: 18 HLHCHVLIDPLAIAGKSDHALLAQL--REALGEPALTQVHRADLAHAPHLHPVLACLAAP 75 Query: 102 GDRGYPDDELFDLAIAHAWRRRASINGSYVAGWLVSEKPAKEVAAHIAESCELFDLLNGR 161 G P +L +L A A RR Y++GWL SE + VAAHI C + N Sbjct: 76 G--AMPSRQLLELT-ARAARRGLHQRRRYLSGWLFSEATSATVAAHITAMCR---IPNAE 129 Query: 162 RR--FLPLFEPHRLSLLANTDRKSFLHRWLGPISHWLWLDLNGQLNNLAAHDLNRDGTSP 219 R F P++EP RL LLA T + W PIS+WL+L G L +L R Sbjct: 130 RAFGFYPVYEPVRLELLAATFERVEQGPWW-PISNWLFLSSGGGLLSLKGQSGQRHPLPD 188 Query: 220 GEQLEQRDWMMQHRVADA--LLVAMAMQEAQHRLPSNPEIAIDASLKRAKARGLQRTEDL 277 + Q D + RV D +L A + +Q ++P + + + A+ GL ED+ Sbjct: 189 SARRNQEDVRLIERVLDIWRVLRAGSHDASQCQIPPFAAVRVSNHIDDARRLGLSTQEDI 248 Query: 278 IFTALNDFSLSAGWADHLAAQWAIEQALVGERSLSKVMTTLPDE 321 + AL+ + A ++ A+ R LS ++ D+ Sbjct: 249 MVFALHHLCIHPRLNSVAALHSMVDAAVSDHRPLSPMLARYSDD 292 >ref|YP_004701610.1| hypothetical protein PPS_2169 [Pseudomonas putida S16] gb|AEJ12730.1| conserved hypothetical protein [Pseudomonas putida S16] Length = 286 Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 11/240 (4%) Query: 80 VPRADYLHDPSICPALVTLHSPGDRGYPDDELFDLAIAHAWRRRASINGSYVAGWLVSEK 139 V RAD H P + P LV L SPG P L +L A A +R Y+ GWL SE Sbjct: 32 VHRADLAHAPQLHPVLVCLASPG--MVPSRRLLELT-ARAAQRALFQQRRYLCGWLFSEA 88 Query: 140 PAKEVAAHIAESCELFDLLNGRRRF--LPLFEPHRLSLLANTDRKSFLHRWLGPISHWLW 197 P+ VA+H+ C L D R F P++EP RL LLA T + W PIS WL+ Sbjct: 89 PSATVASHLTALCRLPD---SNREFGCYPVYEPVRLELLAATFERLEQGPWW-PISDWLF 144 Query: 198 LDLNGQLNNLAAHDLNRDG-TSPGEQLEQRDWMMQHRVAD-ALLVAMAMQEAQHRLPSNP 255 L G+L +L R +P +++ +++ +A +L A + Q ++P Sbjct: 145 LSSGGRLASLKGQSGQRHPLPTPARRIQDDVGLIECVLATWRVLRAGSQHINQCQIPPFA 204 Query: 256 EIAIDASLKRAKARGLQRTEDLIFTALNDFSLSAGWADHLAAQWAIEQALVGERSLSKVM 315 + + A+ GL ED++ AL+ + A I+ A G+ L+ ++ Sbjct: 205 AVRASNHIDDARRLGLSAMEDIVAFALHHLCIHPRLHTVPAVGEMIDAAARGQAPLAALL 264 >ref|YP_004702978.1| hypothetical protein PPS_3553 [Pseudomonas putida S16] gb|AEJ14098.1| hypothetical protein PPS_3553 [Pseudomonas putida S16] Length = 319 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 7/164 (4%) Query: 36 FQLREAHPHCHIHVLLDGNHPCFEGDPLHLHQLAKREIPANPIIVPRADYLHDPSICPAL 95 F ++ P +++LLD C PL + L++ V + + DP PAL Sbjct: 16 FANQQRQPEEALYLLLDPFAGCPPEHPLAIAALSEALGSDAVTRVDCSRLVQDPECWPAL 75 Query: 96 VTLHSPGDRGYPDDELFDLAIAHAWRRRASINGSYVAGWLVSEKPAKEVAAHIAESCELF 155 V L PGD L L+ A R A+ YV GWL+S++PA +A HI+ C++ Sbjct: 76 VQLAEPGD---APTALAPLSATCAARESAA-TWHYVCGWLISDQPADLIAQHISHQCQVL 131 Query: 156 DLLNGRRRFLPLFEPHRLSLLANTDRKSFLHRWLGPISHWLWLD 199 FEP RL+LL T + + LGP+ WL D Sbjct: 132 HQPE-PHGITAWFEPVRLALLRATLKNA--GEVLGPVRSWLHPD 172