BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4114.p (382 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776701.1| Fe3+ ABC transporter permease [Herbaspirillu... 450 e-124 ref|YP_981089.1| binding-protein-dependent transport systems inn... 271 1e-70 ref|YP_004620536.1| Fe3+ ABC transporter permease with duplicate... 268 1e-69 ref|YP_987753.1| binding-protein-dependent transport systems inn... 251 1e-64 ref|YP_004233356.1| binding-protein-dependent transport systems ... 251 1e-64 >ref|YP_003776701.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64793.1| ABC-type Fe3+ transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 308/354 (87%), Positives = 321/354 (90%), Gaps = 4/354 (1%) Query: 1 MHIIGLLAVLIALPLFGILAAWFGLDAAGIDNLRQQMQTVLPGYLATSGWLALMVPLGVV 60 MH IGLLAVLIALP+ GIL AWFGLDA G+D LRQQ +TVLPGYLATSGWLALMV LGVV Sbjct: 1 MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV 60 Query: 61 LVGGAAAVTVSLFEFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGAVQSTLRGWFPG 120 +VGGA AVTVSLFEFRGRRW SWALLLPMAMPAYVSAYAYTDFLQYAG VQSTLRGWFPG Sbjct: 61 VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG 120 Query: 121 WRMDVRGLPGAVCMFVFTLYPYAYLLARNALSERGMHLMEAARMLGTPLSERIRRVALPL 180 +RM+VRGLPGA+CMFV TLYPYAYLLARNALSERG HLMEAARMLG PLSERI RVALPL Sbjct: 121 FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL 180 Query: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRIAAAQYASLLLLFVS 240 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDR+AAAQYASLLLLFV+ Sbjct: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT 240 Query: 241 VLLWLERREQGRMRFAATRGARGSEGAEARLPQLSGAQTLAAWTVCGLPVVLGFVLPVAI 300 VLLWLERREQGRMRFAATRG RG +GAEARLP LS AQT AW VCGLPVVLGFVLPVAI Sbjct: 241 VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI 300 Query: 301 LLQLWAGQWGSSDAAMPAFDLARYAGWVWNSFRFGGMAALAAIVLALGLCFALR 354 LL+LW W + M FD+ RYAGWVWNSFRFGGMAALAAIVLAL LCFALR Sbjct: 301 LLRLW---WSEAGQGM-GFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALR 350 >ref|YP_981089.1| binding-protein-dependent transport systems inner membrane component [Polaromonas naphthalenivorans CJ2] gb|ABM36168.1| binding-protein-dependent transport systems inner membrane component [Polaromonas naphthalenivorans CJ2] Length = 540 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 188/341 (55%), Positives = 227/341 (66%), Gaps = 11/341 (3%) Query: 17 GILAAWFGLDAAGIDNLRQQMQTVLPGYLATSGWLALMVPLGVVLVGGAAAVTVSLFEFR 76 ++ +W D+ L Q +QTVLP Y TS L L+V GV VG A A V+LFEF Sbjct: 28 AVVLSWLAFDSEARSILTQMLQTVLPDYTWTSLLLCLLVGAGVAGVGMATASAVTLFEFP 87 Query: 77 GRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGAVQSTLRGWFP---GWRMDVRGLPGAVC 133 GRR WALLLP+AMPAYV AYAYTDFLQY G +Q+ LR F +VR L GAV Sbjct: 88 GRRVFEWALLLPLAMPAYVLAYAYTDFLQYGGPLQTALRSAFGLQGRLLPEVRSLGGAVL 147 Query: 134 MFVFTLYPYAYLLARNALSERGMHLMEAARMLGTPLSERIRRVALPLARPALAAGAALAL 193 +F LYPY YLLAR ALSER HLMEAAR+LG PLS RIR+VALPLARPA+AAG ALAL Sbjct: 148 VFTAALYPYVYLLARTALSERAAHLMEAARLLGAPLSRRIRQVALPLARPAVAAGVALAL 207 Query: 194 METLADYGVSAYFGLTTFTTGIYKAWVVLDDRIAAAQYASLLLLFVSVLLWLERREQGRM 253 METLAD+GVS+YFG+ TFT GIYKAW+ +D+R+AAAQ A+LLL+FV+VLL +E Q RM Sbjct: 208 METLADFGVSSYFGIQTFTAGIYKAWLSMDNRMAAAQLATLLLIFVAVLLRIEHSAQQRM 267 Query: 254 RFAATRGARGSEGAEARLPQLSGAQTLAAWTVCGLPVVLGFVLPVAILLQLWAGQWGSSD 313 RFAA RGAR A+A QL G + AW VC P+ GFVLPV +L+ W + Sbjct: 268 RFAAGRGARAGS-ADAAPVQLKGGRAALAWVVCAAPIAFGFVLPVLFMLRPLVLGWDN-- 324 Query: 314 AAMPAFDLARYAGWVWNSFRFGGMAALAAIVLALGLCFALR 354 ++A W NS R ++A+ A LA+GL FA+R Sbjct: 325 -----LLWDQFASWTLNSLRLASLSAVLATALAMGLAFAVR 360 >ref|YP_004620536.1| Fe3+ ABC transporter permease with duplicated domains [Ramlibacter tataouinensis TTB310] gb|AEG94517.1| candidate ABC type Fe3+ transport system, permease component with duplicated domains [Ramlibacter tataouinensis TTB310] Length = 549 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 196/344 (56%), Positives = 236/344 (68%), Gaps = 11/344 (3%) Query: 14 PLFGILAAWFGLDAAGIDNLRQQMQTVLPGYLATSGWLALMVPLGVVLVGGAAAVTVSLF 73 P+ G+LAAW D LR+ TVLP Y TS L L V GV LVG A V+LF Sbjct: 33 PVAGVLAAWLQWDGPSASILREMAATVLPDYAVTSLVLCLAVAAGVALVGMGTAAAVTLF 92 Query: 74 EFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGAVQSTLRGWF--PGWRM-DVRGLPG 130 +F GRR WALLLP+AMPAYV AYAYTDFLQ++G +QS LR F G + +VR +PG Sbjct: 93 DFPGRRAFEWALLLPLAMPAYVVAYAYTDFLQFSGPLQSGLRTAFGLEGRVIPEVRSVPG 152 Query: 131 AVCMFVFTLYPYAYLLARNALSERGMHLMEAARMLGTPLSERIRRVALPLARPALAAGAA 190 A +FVF+LYPY YLLAR AL ER HLMEAAR+LG PL+ RI VALPLARPA+AAG A Sbjct: 153 AALVFVFSLYPYVYLLARAALGERATHLMEAARLLGAPLARRIASVALPLARPAVAAGVA 212 Query: 191 LALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRIAAAQYASLLLLFVSVLLWLERREQ 250 LALMETLAD+GVS+YFG+ TFTTGIYKAW+ +D+RIAAAQ A+ LL V++LL LE R Q Sbjct: 213 LALMETLADFGVSSYFGIQTFTTGIYKAWLAMDNRIAAAQLATTLLAVVALLLALEHRAQ 272 Query: 251 GRMRFAATRGARGSEGAEARLPQLSGAQTLAAWTVCGLPVVLGFVLPVAILLQLWAGQWG 310 R+RFAA RG R AEA+ +L G + AAWTVC LPV+LGF+LPV +L+ A W Sbjct: 273 QRLRFAAARGGRAGS-AEAQPVRLRGRRAAAAWTVCALPVLLGFLLPVGFMLRPLAADWS 331 Query: 311 SSDAAMPAFDLARYAGWVWNSFRFGGMAALAAIVLALGLCFALR 354 R+ W +NS R G ++A A+VLAL L F+LR Sbjct: 332 -------VLPWDRFLQWAFNSIRLGVLSAALAVVLALLLSFSLR 368 >ref|YP_987753.1| binding-protein-dependent transport systems inner membrane component [Acidovorax sp. JS42] gb|ABM43677.1| binding-protein-dependent transport systems inner membrane component [Acidovorax sp. JS42] Length = 552 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 184/325 (56%), Positives = 227/325 (69%), Gaps = 11/325 (3%) Query: 33 LRQQMQTVLPGYLATSGWLALMVPLGVVLVGGAAAVTVSLFEFRGRRWLSWALLLPMAMP 92 LR TVLPGYL T+ WL L V +G +VG A A V+LF+FRGRR L W LLLP+AMP Sbjct: 54 LRAMATTVLPGYLWTTLWLGLAVAVGAAVVGTACAAAVTLFDFRGRRSLEWLLLLPLAMP 113 Query: 93 AYVSAYAYTDFLQYAGAVQSTLRGWF--PGWRM-DVRGLPGAVCMFVFTLYPYAYLLARN 149 AYV+AYAYTDFLQ++G +Q LR F G + +VR L GAV +F+F+LYPY YLLAR Sbjct: 114 AYVTAYAYTDFLQFSGPLQVGLRATFGLEGRLLPEVRSLGGAVWVFIFSLYPYVYLLART 173 Query: 150 ALSERGMHLMEAARMLGTPLSERIRRVALPLARPALAAGAALALMETLADYGVSAYFGLT 209 AL ER HLMEAAR+LG + RIR VALPLARPA+AAG AL LMETLAD+GV+AYFG+ Sbjct: 174 ALGERAAHLMEAARLLGASPARRIRSVALPLARPAVAAGVALVLMETLADFGVAAYFGIQ 233 Query: 210 TFTTGIYKAWVVLDDRIAAAQYASLLLLFVSVLLWLERREQGRMRFAATRGARGSEGAEA 269 TFTTGIYKAW+ +DDR+AAAQ A++LL+ V +LL LE R Q RMRF AT G + EA Sbjct: 234 TFTTGIYKAWLSMDDRLAAAQLATVLLVLVVLLLQLELRAQRRMRF-ATGGVGHAGSTEA 292 Query: 270 RLPQLSGAQTLAAWTVCGLPVVLGFVLPVAILLQLWAGQWGSSDAAMPAFDLARYAGWVW 329 + +L GA +AAW VC LPV++GFV PV +L+ A W +R+ W Sbjct: 293 QPTRLHGASAVAAWLVCALPVLMGFVAPVLFMLRPLAADWS-------VLPWSRFIEWAG 345 Query: 330 NSFRFGGMAALAAIVLALGLCFALR 354 NS R GG+ A+ A+ +AL L FA+R Sbjct: 346 NSVRLGGITAVLAVGIALVLAFAVR 370 >ref|YP_004233356.1| binding-protein-dependent transport systems inner membrane component [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44789.1| binding-protein-dependent transport systems inner membrane component [Acidovorax avenae subsp. avenae ATCC 19860] Length = 543 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 190/347 (54%), Positives = 241/347 (69%), Gaps = 14/347 (4%) Query: 14 PLFGILAAWFGLDAAGIDNL---RQQMQTVLPGYLATSGWLALMVPLGVVLVGGAAAVTV 70 P+ + A+W G ++L R+ TVLP YLAT+ WLA+ V G LVG A A V Sbjct: 22 PVLAVFASWLPWGHGGAESLAILREMAATVLPDYLATTVWLAIAVGAGAALVGTATAAAV 81 Query: 71 SLFEFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGAVQSTLRGWF--PGWRM-DVRG 127 +LF+FRGRR L W LLLP+AMPAYV+AYAYTDFLQ++G +Q LR + G + +VR Sbjct: 82 TLFDFRGRRTLEWLLLLPLAMPAYVTAYAYTDFLQFSGPLQVWLRATYGLEGRLLPEVRS 141 Query: 128 LPGAVCMFVFTLYPYAYLLARNALSERGMHLMEAARMLGTPLSERIRRVALPLARPALAA 187 L GAV +F+F+LYPY YLLAR AL ER HLMEAAR+LG PL+ R+R VALPLARPA+AA Sbjct: 142 LGGAVWVFIFSLYPYVYLLARTALGERAAHLMEAARLLGAPLARRVRTVALPLARPAVAA 201 Query: 188 GAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRIAAAQYASLLLLFVSVLLWLER 247 G ALALMETLAD+GV++YFG+ TFTTGIYKAW+ +D+R+AAAQ A+LLL+ V VLL LE+ Sbjct: 202 GVALALMETLADFGVASYFGIQTFTTGIYKAWLSMDNRLAAAQLATLLLVLVVVLLQLEQ 261 Query: 248 REQGRMRFAATRGARGSEGAEARLPQLSGAQTLAAWTVCGLPVVLGFVLPVAILLQLWAG 307 R Q RMRF AT G + AEA+ +L+G + AAW VCGLPVV+GF PVA +L+ A Sbjct: 262 RAQRRMRF-ATSGVGRAGSAEAQPQRLAGWRCAAAWLVCGLPVVMGFFAPVAFMLRPLAA 320 Query: 308 QWGSSDAAMPAFDLARYAGWVWNSFRFGGMAALAAIVLALGLCFALR 354 W R+ W +S R G + A+ A+ +AL L FA+R Sbjct: 321 DWS-------VLPWDRFVEWAGHSVRLGAITAVLAVGVALALAFAVR 360