BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4109.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777713.1| hypothetical protein Hsero_4337 [Herbaspiril...   141   3e-32
ref|YP_001355385.1| alpha-hemolysin [Janthinobacterium sp. Marse...   109   2e-22
ref|YP_001101692.1| hypothetical protein HEAR3470 [Herminiimonas...   106   1e-21
ref|ZP_08273134.1| YidD [Oxalobacteraceae bacterium IMCC9480] >g...    98   5e-19
ref|ZP_02380265.1| hypothetical protein BuboB_21201 [Burkholderi...    97   6e-19

>ref|YP_003777713.1| hypothetical protein Hsero_4337 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65805.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 97/120 (80%), Positives = 102/120 (85%), Gaps = 3/120 (2%)

Query: 1   MKTPLLLLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVRLHGALKGSVLAGKRLCKCHPW 60
           MKTPLLLLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVR+HGALKGS+LAGKRLCKCHPW
Sbjct: 1   MKTPLLLLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVRVHGALKGSLLAGKRLCKCHPW 60

Query: 61  HAGGLDFVPGSAEAQAHAQAQANSPSSSVVPDSPTSALPSP---AARLSPPVAADGCSHS 117
           H GGLD VPGS EA+AHA AQ+   SSS    S  S LPS    AAR+SPPVAADGCSHS
Sbjct: 61  HPGGLDLVPGSPEARAHAMAQSGGASSSDSSGSSKSPLPSSQPVAARVSPPVAADGCSHS 120


>ref|YP_001355385.1| alpha-hemolysin [Janthinobacterium sp. Marseille]
 sp|A6T4D8|Y3695_JANMA RecName: Full=UPF0161 protein mma_3695
 gb|ABR91507.1| alpha-hemolysin [Janthinobacterium sp. Marseille]
          Length = 86

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/69 (79%), Positives = 60/69 (86%)

Query: 1  MKTPLLLLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVRLHGALKGSVLAGKRLCKCHPW 60
          MKT L LL+RAY+LG+SPFLGQNCRFYPSCS YA EA+  HGALKGS LA KRLCKCHPW
Sbjct: 1  MKTILQLLVRAYQLGISPFLGQNCRFYPSCSSYAIEALEEHGALKGSFLATKRLCKCHPW 60

Query: 61 HAGGLDFVP 69
          HAGG+D VP
Sbjct: 61 HAGGVDPVP 69


>ref|YP_001101692.1| hypothetical protein HEAR3470 [Herminiimonas arsenicoxydans]
 sp|A4GAN4|Y3470_HERAR RecName: Full=UPF0161 protein HEAR3470
 emb|CAL63571.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 88

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/69 (78%), Positives = 60/69 (86%)

Query: 1  MKTPLLLLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVRLHGALKGSVLAGKRLCKCHPW 60
          MKT LLLL+RAY+LG+SPFLGQNCRFYPSCS YA EA+  +GALKGS LA KRLCKCHPW
Sbjct: 1  MKTILLLLVRAYQLGISPFLGQNCRFYPSCSAYAFEAIGEYGALKGSFLATKRLCKCHPW 60

Query: 61 HAGGLDFVP 69
          H GG+D VP
Sbjct: 61 HPGGVDPVP 69


>ref|ZP_08273134.1| YidD [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33391.1| YidD [Oxalobacteraceae bacterium IMCC9480]
          Length = 81

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/72 (70%), Positives = 57/72 (79%)

Query: 7  LLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVRLHGALKGSVLAGKRLCKCHPWHAGGLD 66
          +LLRAYKLG+SPFLGQNCRF PSCSDYAA+A+  HGALKG +LA KRL +CHPWH GGLD
Sbjct: 1  MLLRAYKLGISPFLGQNCRFLPSCSDYAAQAITEHGALKGGILAAKRLARCHPWHPGGLD 60

Query: 67 FVPGSAEAQAHA 78
           VP    A   A
Sbjct: 61 PVPQRDTASTAA 72


>ref|ZP_02380265.1| hypothetical protein BuboB_21201 [Burkholderia ubonensis Bu]
          Length = 88

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 9/86 (10%)

Query: 1  MKTPLLLLLRAYKLGVSPFLGQNCRFYPSCSDYAAEAVRLHGALKGSVLAGKRLCKCHPW 60
          M+T L+ LLR YK+ VSP LG  CRFYPSCSDYA EA++ HGA +G+ LA +RLC+CHP+
Sbjct: 1  MQTVLIALLRFYKVAVSPLLGNRCRFYPSCSDYAREAIQYHGAARGTYLAARRLCRCHPF 60

Query: 61 HAGGLDFVP---------GSAEAQAH 77
           AGG+D VP         G AEAQ+H
Sbjct: 61 SAGGIDLVPPPNSETRARGDAEAQSH 86