BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4107.p (556 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777712.1| inner-membrane transmembrane protein [Herbas... 889 0.0 ref|YP_004755092.1| OxaI/YidC membrane insertion protein [Collim... 671 0.0 ref|YP_001355384.1| preprotein translocase YidC subunit [Janthin... 664 0.0 ref|YP_001101691.1| preprotein translocase membrane subunit [Her... 636 e-180 ref|ZP_04579790.1| preprotein translocase YidC subunit [Oxalobac... 612 e-173 >ref|YP_003777712.1| inner-membrane transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65804.1| inner-membrane transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 445/459 (96%), Positives = 454/459 (98%) Query: 58 ASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQ 117 ASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQ Sbjct: 72 ASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQ 131 Query: 118 PGARSLDNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQL 177 G R+LDNGNE+QLVLVA+QGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQL Sbjct: 132 AGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQL 191 Query: 178 VRDGNKPGGESHFYSTFTGPAVYSSTEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYF 237 VRDGNKPGGESHFYSTFTGPAVYS++EHFEKLDFEKIANGKQQHVNK DNGWIAMVQHYF Sbjct: 192 VRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNKTDNGWIAMVQHYF 251 Query: 238 VSAFIPPQNAQRDIFSKKVGDNLYAVGSILPLGSVAPNASVTMDSQLYSGPTVSKTLQAI 297 VSAFIPPQNAQRD+FSKKVGDNLYAVGSILPLG+VAPNASVTMDSQLYSGPTVSKTLQAI Sbjct: 252 VSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQLYSGPTVSKTLQAI 311 Query: 298 APGLDLVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSM 357 APGLDLVRDYGHLTVIAEPIFWLMTHIHN+VGNWGWTIILLTVLIKL+FFPLSAASYRSM Sbjct: 312 APGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKLIFFPLSAASYRSM 371 Query: 358 AKMKAVSPKMQAIRERHKGDPQAMNREMMALYKTEKINPLGGCLPIVIQIPVFIALYSVL 417 AKMKAVSPKMQAIRERHKGDPQAMNREMM LYKTEKINPLGGCLPI IQIPVFIALYSVL Sbjct: 372 AKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIAIQIPVFIALYSVL 431 Query: 418 LASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPV 477 LASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPV Sbjct: 432 LASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPV 491 Query: 478 QAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 516 QAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW Sbjct: 492 QAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 530 >ref|YP_004755092.1| OxaI/YidC membrane insertion protein [Collimonas fungivorans Ter331] gb|AEK64269.1| OxaI/YidC membrane insertion protein [Collimonas fungivorans Ter331] Length = 553 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 323/462 (69%), Positives = 375/462 (81%), Gaps = 11/462 (2%) Query: 55 VRAASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIF 114 V A+IDTVGG LKRLELL Q D VDPTKN+VLFDS YLAE+GLIGG FPNH + F Sbjct: 90 VVKANIDTVGGVLKRLELLTQKDTVDPTKNLVLFDSGANRTYLAETGLIGGAFPNHHSPF 149 Query: 115 TAQPGARSLDNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLY 174 A PGAR+LDNGN++QLVL + +GGVKLTK YTFKR Y IDVKH VTN +GAAI+PSLY Sbjct: 150 VALPGARTLDNGNQIQLVLESTEGGVKLTKVYTFKRGDYTIDVKHIVTNDSGAAISPSLY 209 Query: 175 LQLVRDGNKPGGESHFYSTFTGPAVYSSTEHFEKLDFEKIANGKQQHVNKADNGWIAMVQ 234 L+L RDG+ P GE F TFTG AVY+ F+K F+KI +GK H KADNGW A++Q Sbjct: 210 LRLKRDGHAPEGEQRFVHTFTGAAVYTDANKFQKFAFDKIEDGKADHATKADNGWFAIIQ 269 Query: 235 HYFVSAFIPPQNAQRDIFSKKVGDNLYAVGSILPLGSVAPNASVTMDSQLYSGPTVSKTL 294 HYFVSAFIP A R+I ++K+ NLYAV +ILPLG++AP A+VTMD++LYSGP + L Sbjct: 270 HYFVSAFIPQDKAPREIKTEKIATNLYAVSNILPLGTIAPGATVTMDARLYSGPEIQSDL 329 Query: 295 QAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASY 354 +AIAPGL+LV+DYG LT+IA+PIFWLMT IH ++GNWGWTII LTVLIKL FFPLSAASY Sbjct: 330 EAIAPGLELVKDYGWLTIIAKPIFWLMTQIHKVLGNWGWTIIALTVLIKLAFFPLSAASY 389 Query: 355 RSMAKMKAVSPKMQAIRERHKGDPQAMNREMMALYKTEKINPLGGCLPIVIQIPVFIALY 414 RSMAKMK V+PKM +IRER K +PQ MN+ MM LYKTEKINPLGGCLPIV+QIPVFI+LY Sbjct: 390 RSMAKMKLVTPKMTSIRERFKSEPQKMNQAMMELYKTEKINPLGGCLPIVVQIPVFISLY 449 Query: 415 SVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPP 474 VLLASVE+R APWLGW+HDL APD P +LP++MA SMF+QTKLNPTPP Sbjct: 450 WVLLASVEIRNAPWLGWIHDLAAPD-----------PFYILPVVMAISMFIQTKLNPTPP 498 Query: 475 DPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 516 DP+QAKVMMFMPL+FS MFFFFPSGLVLYWVTNN+LSIAQQW Sbjct: 499 DPMQAKVMMFMPLIFSVMFFFFPSGLVLYWVTNNVLSIAQQW 540 >ref|YP_001355384.1| preprotein translocase YidC subunit [Janthinobacterium sp. Marseille] sp|A6T4D7|OXAA_JANMA RecName: Full=Inner membrane protein oxaA gb|ABR88618.1| preprotein translocase YidC subunit [Janthinobacterium sp. Marseille] Length = 564 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 318/461 (68%), Positives = 380/461 (82%), Gaps = 3/461 (0%) Query: 58 ASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQ 117 A IDTVGGE++ LELL + D TK++VLFDS P YL ++GLIGG +PNHK++FT + Sbjct: 95 ADIDTVGGEIRHLELLTHHESSDSTKDIVLFDSTPPRTYLGQTGLIGGAYPNHKSLFTVR 154 Query: 118 PGARSLDNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQL 177 PG RSL+ G++VQLVL AEQ GVKL KTYTFKR Y ID+KH V N T AAINPSLYLQL Sbjct: 155 PGPRSLEAGDQVQLVLEAEQNGVKLVKTYTFKRGEYKIDIKHDVINKTAAAINPSLYLQL 214 Query: 178 VRDGNKPGGESHFYSTFTGPAVYSSTEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYF 237 VRDG+K ES FYSTFTGPAVYS ++ F+K+ FE I GK +HV KA++GWIAMVQHYF Sbjct: 215 VRDGSKLNNESMFYSTFTGPAVYSDSDKFQKVTFESIEKGKIEHVVKAESGWIAMVQHYF 274 Query: 238 VSAFIPPQNAQRDIFSKKVGDNLYAVGSILPLGSVAPNASVTMDSQLYSGPTVSKTLQAI 297 VSAF+PP N R+ F+KK+ NLYAVG+I+P+G+VAP A+ +MD+ LYSGP SK L+A+ Sbjct: 275 VSAFVPPANVPREYFTKKLATNLYAVGAIMPMGAVAPGATQSMDATLYSGPQESKRLEAV 334 Query: 298 APGLDLVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSM 357 APG +LV+DYG LT+IA+PIFWLM IH L+GNWGWTI++LT++IKL FFPLSAASYRSM Sbjct: 335 APGFELVKDYGWLTIIAKPIFWLMIQIHQLLGNWGWTIVVLTIVIKLAFFPLSAASYRSM 394 Query: 358 AKMKAVSPKMQAIRERHKGDPQAMNREMMALYKTEKINPLGGCLPIVIQIPVFIALYSVL 417 AKMK V+PKM IR ++KG+PQ MN MM LYK EKINPLGGC+PIVIQIPVFI+LY VL Sbjct: 395 AKMKLVTPKMTEIRTKYKGEPQKMNAAMMELYKKEKINPLGGCMPIVIQIPVFISLYWVL 454 Query: 418 LASVEMRGAPWLGWVHDLTAPDRLFGT--IPYFNMPIGLLPIIMAASMFLQTKLNPTPPD 475 LASVEMR APWL W+ DL +PD LFG+ I F++ IG+LPI+MA SMF+QTKLNPTPPD Sbjct: 455 LASVEMRNAPWL-WISDLASPDTLFGSYMIGSFHLTIGILPILMAISMFIQTKLNPTPPD 513 Query: 476 PVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 516 P+QAKVMMFMP+ FS MFFFFP+GLVLYWV NNILSIAQQW Sbjct: 514 PIQAKVMMFMPIAFSLMFFFFPAGLVLYWVVNNILSIAQQW 554 >ref|YP_001101691.1| preprotein translocase membrane subunit [Herminiimonas arsenicoxydans] sp|A4GAN3|OXAA_HERAR RecName: Full=Inner membrane protein oxaA emb|CAL63570.1| Inner membrane protein OxaA [Herminiimonas arsenicoxydans] Length = 569 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 303/468 (64%), Positives = 371/468 (79%), Gaps = 4/468 (0%) Query: 60 IDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQPG 119 IDT GGE++ LELLK + D +KNVVLFD H YL ++GLIGG +PNHK++F A PG Sbjct: 98 IDTAGGEVRHLELLKHHESGDESKNVVLFDENGQHTYLGQTGLIGGAYPNHKSMFAAVPG 157 Query: 120 ARSLDNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQLVR 179 R+LD+ N+VQLVL +EQ GVKL KT+TFKR Y +D+KH V N T AI PSLYLQLV Sbjct: 158 PRTLDSANQVQLVLQSEQQGVKLIKTFTFKRGEYKVDIKHDVVNNTSTAITPSLYLQLVH 217 Query: 180 DGNKPGGESHFY-STFTGPAVYSSTEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYFV 238 DG+ GG S F S FTGPA+Y+ + F+K+ FE I GK +H K ++GWIA+VQHYFV Sbjct: 218 DGSALGGGSMFMASAFTGPAIYTEADKFQKVTFESIEKGKAEHAMKGESGWIALVQHYFV 277 Query: 239 SAFIPPQNAQRDIFSKKVGDNLYAVGSILPLGSVAPNASVTMDSQLYSGPTVSKTLQAIA 298 SAF+PP N R+ F+KK+ NLYAVG+ILP+G+VAP A+ +MD+ +YSGP SK L+A+A Sbjct: 278 SAFVPPANTPREYFTKKLATNLYAVGTILPMGTVAPGATASMDTTMYSGPQESKRLEAVA 337 Query: 299 PGLDLVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSMA 358 PG +LV+DYG LT+IA+PIFWLM IH ++GNWGWTII+LT++IKL FFPLSAA YRSMA Sbjct: 338 PGFELVKDYGWLTIIAKPIFWLMMQIHQILGNWGWTIIVLTIVIKLAFFPLSAAGYRSMA 397 Query: 359 KMKAVSPKMQAIRERHKGDPQAMNREMMALYKTEKINPLGGCLPIVIQIPVFIALYSVLL 418 KMK V+PKM IR R+KG+PQ MN MM LYK EKINP+GGC P+++QIPVFI+LY VLL Sbjct: 398 KMKLVTPKMTDIRTRYKGEPQKMNAAMMELYKKEKINPIGGCFPMLVQIPVFISLYWVLL 457 Query: 419 ASVEMRGAPWLGWVHDLTAPDRLFGT--IPYFNMPIGLLPIIMAASMFLQTKLNPTPPDP 476 ASVE+R A WL W+HDL APD LFG+ I F++ IG+LPI+MA SMF+QTKLNPTPPDP Sbjct: 458 ASVEIRNASWL-WIHDLAAPDILFGSYHIGTFHLTIGILPILMAISMFIQTKLNPTPPDP 516 Query: 477 VQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWGQNERSTG 524 +QAKVMMFMP+ FS MFFFFP+GLVLYWV NNILSIAQQW NE+ G Sbjct: 517 IQAKVMMFMPIAFSVMFFFFPAGLVLYWVVNNILSIAQQWFINEKLLG 564 >ref|ZP_04579790.1| preprotein translocase YidC subunit [Oxalobacter formigenes OXCC13] gb|EEO30763.1| preprotein translocase YidC subunit [Oxalobacter formigenes OXCC13] Length = 559 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 292/458 (63%), Positives = 360/458 (78%), Gaps = 12/458 (2%) Query: 60 IDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQPG 119 I+ GG + LELLK PD VD TK++VLF+S P +YLA++GL GG +PNH T F +PG Sbjct: 98 INPDGGVFQNLELLKYPDNVDSTKDMVLFESAPPRIYLAQTGLTGGLYPNHATRFHIRPG 157 Query: 120 ARSL-DNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQLV 178 R+L +N +EV+LV+ AEQ GV+LTKTYTFKR SY+IDV VTN + IN SLYLQL+ Sbjct: 158 ERTLGENSDEVKLVMDAEQDGVRLTKTYTFKRGSYVIDVDQKVTNLSHEPINASLYLQLL 217 Query: 179 RDGNKPGGESHFYSTFTGPAVYSSTEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYFV 238 RD +P G+S F STFTGPAVYS + F+K+ F+ I GK H K DNGW+ MVQHYFV Sbjct: 218 RDSERPEGQSRFISTFTGPAVYSEEDKFQKIKFDNIGEGKMDHAIKTDNGWVGMVQHYFV 277 Query: 239 SAFIPPQNAQRDIFSKKVGDNLYAVGSILPLGSVAPNASVTMDSQLYSGPTVSKTLQAIA 298 SAFIP R+ ++KKVG+NLYA+G+++PLG++APNAS + D++LY GP SK L+ A Sbjct: 278 SAFIPQDKVARENYTKKVGENLYAIGTVIPLGTIAPNASASNDTRLYVGPQESKLLEKTA 337 Query: 299 PGLDLVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSMA 358 PGL+LV+DYG LT+IA+PIFWLMTHIHN VGNWGWTIILLT LIKL+F PLSAASYRSMA Sbjct: 338 PGLELVKDYGWLTIIAKPIFWLMTHIHNEVGNWGWTIILLTCLIKLIFAPLSAASYRSMA 397 Query: 359 KMKAVSPKMQAIRERHKGDPQAMNREMMALYKTEKINPLGGCLPIVIQIPVFIALYSVLL 418 KMK +P++ +RER+K D Q MN+E+M LYK EKINPLGGCLP+VIQIPVFI+LY VLL Sbjct: 398 KMKQFTPRITELRERYKDDKQRMNKELMGLYKAEKINPLGGCLPVVIQIPVFISLYWVLL 457 Query: 419 ASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPVQ 478 ASVE+R APWLGW+ +L APD PY+ +LPIIMA SMF+Q K++P PPDP+Q Sbjct: 458 ASVEIRNAPWLGWIQNLAAPD------PYY-----ILPIIMAGSMFIQQKMSPPPPDPMQ 506 Query: 479 AKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 516 AK+MMF+P+ FS FFFFPSGLVLYWV NN+LSIAQQ+ Sbjct: 507 AKMMMFLPIAFSITFFFFPSGLVLYWVVNNLLSIAQQY 544