BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4092.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776687.1| 3-isopropylmalate dehydratase small subunit ... 448 e-124 ref|YP_001099520.1| isopropylmalate isomerase small subunit [Her... 392 e-107 ref|YP_001353860.1| 3-isopropylmalate dehydratase small subunit ... 392 e-107 ref|YP_004752522.1| 3-isopropylmalate dehydratase small subunit ... 390 e-107 ref|ZP_08272576.1| 3-isopropylmalate dehydratase small subunit [... 388 e-106 >ref|YP_003776687.1| 3-isopropylmalate dehydratase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64779.1| 3-isopropylmalate dehydratase (small subunit) protein [Herbaspirillum seropedicae SmR1] Length = 215 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 209/215 (97%), Positives = 214/215 (99%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK Sbjct: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 Query: 61 RPVNPDFVLNQERYQGASILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 RP+NPDFVLNQERYQG+SILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC Sbjct: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQVVSTTNGSEVYPFDISEFRKYCL 180 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQ+VSTTNGS+ YPF+ISEFRKYCL Sbjct: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 180 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI Sbjct: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 >ref|YP_001099520.1| isopropylmalate isomerase small subunit [Herminiimonas arsenicoxydans] emb|CAL61393.1| 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) [Herminiimonas arsenicoxydans] Length = 215 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 179/215 (83%), Positives = 196/215 (91%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M KF + +GLVAPLDRANVDTDAIIPKQFLKSIKR+GFGPNLFDEWRYLD GEPG DN+ Sbjct: 1 MEKFNILDGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNTN 60 Query: 61 RPVNPDFVLNQERYQGASILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 RP+NPDFVLNQ RYQGA ILL+RKNFGCGSSREHAPWAL Q+GFRA++APSFADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYQGAQILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQVVSTTNGSEVYPFDISEFRKYCL 180 YKNGLLP+ LTE QVDHLFNEVKAFPG+ LVIDLEKQ+++T+NGS YPFDI FRKYCL Sbjct: 121 YKNGLLPVTLTEAQVDHLFNEVKAFPGFHLVIDLEKQIIATSNGSVAYPFDIDAFRKYCL 180 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 LNGFDDIGLTL+KAD IRAYEE+HL QPWLSNTI Sbjct: 181 LNGFDDIGLTLQKADKIRAYEERHLAAQPWLSNTI 215 >ref|YP_001353860.1| 3-isopropylmalate dehydratase small subunit [Janthinobacterium sp. Marseille] gb|ABR88621.1| 3-isopropylmalate dehydratase small subunit [Janthinobacterium sp. Marseille] Length = 215 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 179/215 (83%), Positives = 196/215 (91%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M+KF + GLVAPLDRANVDTDAIIPKQFLKSIKR+GFGPNLFDEWRYLD GEPG DNS Sbjct: 1 MDKFTILNGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNSN 60 Query: 61 RPVNPDFVLNQERYQGASILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 RP+NPDFVLNQ RYQGASILL+RKNFGCGSSREHAPWAL Q+GFRA++APSFADIFFNNC Sbjct: 61 RPLNPDFVLNQSRYQGASILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQVVSTTNGSEVYPFDISEFRKYCL 180 YKNGLLP+ L+E QVDHLFNEVKAFPG+ LVIDLEKQV+ T+NGS YPF+I FRKYCL Sbjct: 121 YKNGLLPVALSEAQVDHLFNEVKAFPGFHLVIDLEKQVIGTSNGSVTYPFEIDAFRKYCL 180 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 LNGFDDIGLTL+KAD IRA+EE+HL QPWLSNTI Sbjct: 181 LNGFDDIGLTLQKADKIRAFEERHLAAQPWLSNTI 215 >ref|YP_004752522.1| 3-isopropylmalate dehydratase small subunit [Collimonas fungivorans Ter331] gb|AEK61699.1| 3-isopropylmalate dehydratase small subunit [Collimonas fungivorans Ter331] Length = 216 Score = 390 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 178/215 (82%), Positives = 200/215 (93%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 MNKF V +GLVAPLDRANVDTDAIIPKQFLKSI+R+GFGPNLFDEWRYLDHGEPGMDNS+ Sbjct: 2 MNKFTVVDGLVAPLDRANVDTDAIIPKQFLKSIQRTGFGPNLFDEWRYLDHGEPGMDNSR 61 Query: 61 RPVNPDFVLNQERYQGASILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 RP+NPDFVLNQ+RYQGASILL+RKNFGCGSSREHAPWALDQ+GFRAVIAPSFADIFFNNC Sbjct: 62 RPLNPDFVLNQQRYQGASILLTRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 121 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQVVSTTNGSEVYPFDISEFRKYCL 180 +KNGLLP+VL E Q+D LF+EVKAFPGYRL IDL+KQ+VST NG+ +PF++ EFRKYCL Sbjct: 122 FKNGLLPLVLPEAQIDRLFDEVKAFPGYRLQIDLDKQLVSTANGNVAFPFEVGEFRKYCL 181 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 LNG DDIGLTLR++D IR +EE+HL QPWLSNTI Sbjct: 182 LNGLDDIGLTLRQSDKIRDFEERHLFAQPWLSNTI 216 >ref|ZP_08272576.1| 3-isopropylmalate dehydratase small subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33965.1| 3-isopropylmalate dehydratase small subunit [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 175/215 (81%), Positives = 201/215 (93%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 MNKF +H+GLVAPLDRANVDTDAIIPKQFLKSI+R+GFGPNLFDEWRYLDHGEPG DNS+ Sbjct: 1 MNKFNLHDGLVAPLDRANVDTDAIIPKQFLKSIQRTGFGPNLFDEWRYLDHGEPGRDNSR 60 Query: 61 RPVNPDFVLNQERYQGASILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 RP+NPDFVLNQ RY GASILL+RKNFGCGSSREHAPWALDQ+GFRA+IAPS+ADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYTGASILLTRKNFGCGSSREHAPWALDQYGFRAIIAPSYADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQVVSTTNGSEVYPFDISEFRKYCL 180 +KNGLLPIVLTE Q+DHLF+EV+AFPG+RLVIDLE+Q+VSTTNGSE +PF++ FRKYCL Sbjct: 121 FKNGLLPIVLTEAQIDHLFDEVRAFPGFRLVIDLERQLVSTTNGSESFPFEVDTFRKYCL 180 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 NG DDIGLTL++AD IRA+EE+HL +PWL+N I Sbjct: 181 QNGLDDIGLTLQQADKIRAFEERHLAGKPWLTNAI 215