BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4087.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776684.1| transmembrane Tfp pilus assembly FimV protei... 189 1e-45 ref|YP_001099523.1| hypothetical protein HEAR1220 [Herminiimonas... 175 2e-41 ref|YP_001353857.1| FimV type IV pilus assembly protein [Janthin... 151 3e-34 ref|YP_004752525.1| hypothetical protein CFU_1870 [Collimonas fu... 149 1e-33 ref|ZP_08272579.1| putative type IV pilus assembly FimV-transmem... 129 7e-28 >ref|YP_003776684.1| transmembrane Tfp pilus assembly FimV protein [Herbaspirillum seropedicae SmR1] gb|ADJ64776.1| transmembrane Tfp pilus assembly FimV protein [Herbaspirillum seropedicae SmR1] Length = 896 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 161/333 (48%), Positives = 197/333 (59%), Gaps = 52/333 (15%) Query: 1 MPVHTNKKLPLSQMKTLSAAIALAMALPLGAQAAALGKLTVLSSLGQPLRAEIELTSVSK 60 MP++TNKK LSQ+KTLSAA+ALA+A+PLGAQAA+LGKLTVLS+LGQPLRAEIE+T+VS Sbjct: 1 MPLNTNKKPHLSQIKTLSAAVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSA 60 Query: 61 EEEGSLVARLAPADAFRKANIDFNPVLSSLRFSVEQRQGRQLVRISSAQALNEPFVDLLL 120 EE G L A+LAPA+AFR+AN+D+NPVL SL F+VEQRQGR +RISS+Q +++PFVDLLL Sbjct: 61 EEAGKLSAKLAPAEAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLL 120 Query: 121 ELSGGGTRLVREYTFLLDPPDMRKPQAAQSAPATPPAAAPAVAKPAAVAATTATPVAKPA 180 ELS G +RL+REYTFLLDP D + P+ AQ AP TP A A AK A AA A A Sbjct: 121 ELSAGDSRLIREYTFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEP 180 Query: 181 PAAAPATASSAATNN------------------------------SDDEPVSSIVTKSAP 210 A A +AA S +EP S+IV + AP Sbjct: 181 APAPAAATQAAAAAAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAP 240 Query: 211 SPLAEEIIRNGRSSEQGGLTNAPVPAAVAARTVPQPAAAKSEETAPAATGKRGKGAAANA 270 S LAEE+IR +++ +A AA A V + A Sbjct: 241 SALAEELIRRQQAAPDSTPASASPSAAAPAAPVQGATGQAAAAPAG-------------- 286 Query: 271 AAKPEGKAGDKTYRVKEGDTLADIANRTKDNTV 303 K GD YRVK GDTLA IA R + V Sbjct: 287 ------KTGD--YRVKPGDTLAGIAARNQQANV 311 >ref|YP_001099523.1| hypothetical protein HEAR1220 [Herminiimonas arsenicoxydans] emb|CAL61396.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 915 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 111/183 (60%), Positives = 132/183 (72%), Gaps = 4/183 (2%) Query: 14 MKTLSAAIALAMALPLGAQAAALGKLTVLSSLGQPLRAEIELTSVSKEEEGSLVARLAPA 73 +KTLSAA+ A+ L A AA LGKLTVLSSLGQPLRAEIELTSVS +E GSL+ +LA A Sbjct: 18 LKTLSAAVISAVVLS-NAHAAGLGKLTVLSSLGQPLRAEIELTSVSPDEAGSLIPKLASA 76 Query: 74 DAFRKANIDFNPVLSSLRFSVEQRQGRQLVRISSAQALNEPFVDLLLELSGGGTRLVREY 133 DAFR+ANID +P L SLRF+VEQR R +VRI+S Q +NEPFVD+LLEL+G RLVREY Sbjct: 77 DAFRQANIDLHPALFSLRFAVEQRGNRPIVRITSTQPINEPFVDMLLELAGNKNRLVREY 136 Query: 134 TFLLDPPDMRKPQAAQSAPATPPAAAPAVA---KPAAVAATTATPVAKPAPAAAPATASS 190 TFLLDPP+MR +A Q AP A P V + A ++ PVA+PAPAA A Sbjct: 137 TFLLDPPEMRSARAVQVAPIVVGRALPPVTPVERNPESATSSPEPVAQPAPAARETAAPI 196 Query: 191 AAT 193 AA+ Sbjct: 197 AAS 199 >ref|YP_001353857.1| FimV type IV pilus assembly protein [Janthinobacterium sp. Marseille] gb|ABR89347.1| FimV type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 944 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 128/291 (43%), Positives = 157/291 (53%), Gaps = 60/291 (20%) Query: 13 QMKTLSAAIALAMALPLGAQAAALGKLTVLSSLGQPLRAEIELTSVSKEEEGSLVARLAP 72 ++KTLSAA+ A+ L A AA LGKLTV+SSLGQPLRAEIELTSV+ +E SL +LA Sbjct: 17 KLKTLSAAVISALVLS-NAYAAGLGKLTVMSSLGQPLRAEIELTSVAPDELASLAPKLAS 75 Query: 73 ADAFRKANIDFNPVLSSLRFSVEQRQGRQLVRISSAQALNEPFVDLLLELSGGGTRLVRE 132 A+AFR+ANIDFNP L SLRF+VEQR G+ +VRI+S Q +NEPFVD+LLEL G RLVRE Sbjct: 76 AEAFRQANIDFNPSLFSLRFAVEQRGGQPIVRITSTQPINEPFVDMLLELGGNKGRLVRE 135 Query: 133 YTFLLDPPDMRKPQAAQSAPATPPAAAPAVAKPAAVAATTATPVAKPAPAAAPATASSAA 192 YTFLLDPP+MR Q+AQ A P A+ A A V + P A A ++ Sbjct: 136 YTFLLDPPEMRSAQSAQVA-------------PIAITAPPAARVVESRPEVAAAPVAAPT 182 Query: 193 TNNSDDEPVSSIVTKSAPSPLAEEIIRNGRSSEQGGLTNAPVPAAVAARTVPQPAAAKSE 252 + A R +P P AAK Sbjct: 183 PAPA---------------------------------------PAAPVREIPPPVAAKPR 203 Query: 253 ETAPAATGKRGKGAAANAAAKPEGKAGDKTYRVKEGDTLADIANRTKDNTV 303 APA A AA E Y+VK+GDTLA IAN+ + + V Sbjct: 204 AVAPAPAAAPAPAPKAAAAPVDE-------YQVKKGDTLAKIANQYRPSGV 247 >ref|YP_004752525.1| hypothetical protein CFU_1870 [Collimonas fungivorans Ter331] gb|AEK61702.1| hypothetical protein CFU_1870 [Collimonas fungivorans Ter331] Length = 1006 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 129/325 (39%), Positives = 173/325 (53%), Gaps = 37/325 (11%) Query: 1 MPVHTNKKLPLSQMKTLSAAIALAMALPLGAQAAALGKLTVLSSLGQPLRAEIELTSVSK 60 M ++++ K + +KTL+AA+ + + AA LGKLTVLSSLGQPLRAEIELTSVS Sbjct: 21 MHLNSSNKFISTGLKTLTAAVVSTLLMVSNVDAAGLGKLTVLSSLGQPLRAEIELTSVSA 80 Query: 61 EEEGSLVARLAPADAFRKANIDFNPVLSSLRFSVEQRQGRQLVRISSAQALNEPFVDLLL 120 +E G LVA+LA + +++ANIDFNP L SL+F+++QR GR+ VR++S Q +NEPFVD+L+ Sbjct: 81 DEAGGLVAKLASPETYQQANIDFNPALMSLQFTIDQRNGRRFVRVTSTQPINEPFVDMLM 140 Query: 121 ELSGGGTRLVREYTFLLDPPDMRKPQAAQSAPATPPAAAPAVAKPAAVAATTATPVAKPA 180 EL G RLVREYT LLDP R+ Q AQ A AA AA A+ A A Sbjct: 141 ELGGTKARLVREYTLLLDPAGQRQAQPAQIA--------------AAPAAPRASTGALAA 186 Query: 181 PAAAPATASSAATNNSDDEPVSSIVTKSAPSPLAEEIIRNGRSSEQGGLTNAPVPA---A 237 P +AP A + + S + + + GG T A A Sbjct: 187 PRSAPTQAQTGQVQSQG----------GGASTITDATRAAAARAVAGGETAPASSASKPA 236 Query: 238 VAARTVPQPAAAKSEETAPAATG-----KRGKGAAANAAAK-PEGKAGDKT----YRVKE 287 V+A T AKS APA G K+G A A+ P G + D+ YR E Sbjct: 237 VSASTSSPTGQAKSSSAAPAPAGGDYQVKKGDTLARIASENLPAGISLDQMLVALYRSNE 296 Query: 288 GDTLADIANRTKDNTVIAGSDADCA 312 G + NR + +++ DAD A Sbjct: 297 GAFVGKNMNRLRSGQILSIPDADSA 321 >ref|ZP_08272579.1| putative type IV pilus assembly FimV-transmembrane like protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33968.1| putative type IV pilus assembly FimV-transmembrane like protein [Oxalobacteraceae bacterium IMCC9480] Length = 884 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 77/150 (51%), Positives = 104/150 (69%) Query: 41 VLSSLGQPLRAEIELTSVSKEEEGSLVARLAPADAFRKANIDFNPVLSSLRFSVEQRQGR 100 +LS+LGQPL AEIELTSV+KEE G+LVA+LA A+AFR+A+I+ NP + ++RF++EQ GR Sbjct: 1 MLSALGQPLSAEIELTSVNKEEAGTLVAKLASAEAFRQASIELNPAVLAMRFAIEQSGGR 60 Query: 101 QLVRISSAQALNEPFVDLLLELSGGGTRLVREYTFLLDPPDMRKPQAAQSAPATPPAAAP 160 Q +R++SAQ +NEP+VDLLLEL G RLVREYTFLLDP ++R Q ++ Sbjct: 61 QFIRVTSAQPINEPYVDLLLELEGANGRLVREYTFLLDPANLRSAQVNAASSVQGRVPPA 120 Query: 161 AVAKPAAVAATTATPVAKPAPAAAPATASS 190 + A AT +T A +P+ AP S Sbjct: 121 SAAPTPPAPATGSTTAAGASPSPAPVRTRS 150