BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4086.p (578 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776684.1| transmembrane Tfp pilus assembly FimV protei... 577 e-162 ref|YP_284092.1| hypothetical protein Daro_0866 [Dechloromonas a... 198 3e-48 gb|EGW61640.1| FimV N-terminal domain protein [Dechlorosoma suil... 194 3e-47 ref|YP_003166482.1| hypothetical protein CAP2UW1_1225 [Candidatu... 181 3e-43 ref|YP_932547.1| putative type 4 pilus biogenesis [Azoarcus sp. ... 164 6e-38 >ref|YP_003776684.1| transmembrane Tfp pilus assembly FimV protein [Herbaspirillum seropedicae SmR1] gb|ADJ64776.1| transmembrane Tfp pilus assembly FimV protein [Herbaspirillum seropedicae SmR1] Length = 896 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 443/584 (75%), Positives = 475/584 (81%), Gaps = 9/584 (1%) Query: 1 MLIALYRANPDAFQGNNINRLRAGKILSIPDQPTAAAVDRDEARGMVVAQAQDFNAYRNK 60 MLIALYRANPDAF GNNINRLRAGKILSIPDQPTAAAVD+ EARGMVVAQAQDFNAYRNK Sbjct: 316 MLIALYRANPDAFMGNNINRLRAGKILSIPDQPTAAAVDQTEARGMVVAQAQDFNAYRNK 375 Query: 61 LAGQVANAPAGKAGSNRQSGGGKITARVEERSGTQDARDRLELSRANKGRGKTGNAGAAA 120 LAGQVA+APAGK G++RQSGGGKIT RVEERSG Q+ARDRLELSRANKGRGKTGNAGAAA Sbjct: 376 LAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSRANKGRGKTGNAGAAA 435 Query: 121 EDKAASERALAEA-NDRVKDLEKNVDNLQKLLELKNKTIADLTAQQQKPADAAKPAVADN 179 + A+ NDRVKDLEKNVDNLQKLLELKNKTIADL+AQQ++ + A A Sbjct: 436 AEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQQKEAKPESPAAAAP- 494 Query: 180 GAAKAENQPAEAATPTPAPTPAPAAATTPQPVASAKPTDKG---DKSGGSFLDKVKENPY 236 AA AE +PAE ATP A A A P P +A P +KSGGSF+DK+KENPY Sbjct: 495 -AANAEVKPAEGATPAADAPAAAAPAPAPAPAPAATPPMAAKPAEKSGGSFVDKIKENPY 553 Query: 237 IVAGAGVLVALLAAGGGVLAMRRRKKKTEDGPTEPTIEPEPAPAPAPEPAAAIAEPSPEP 296 ++AGAGVLVALLA GGGVLAMRRRKKK E EP +EPEPA P PEP AA PEP Sbjct: 554 VLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVPEPEPVAAAVAAEPEP 613 Query: 297 VAEAPAAEVAEAEPVAAAAPV-EEAPVDPIAEADMYIAYGRDEQAEDILKLALQTQPERQ 355 A A A AEPVA A V EEAPVDPI EADMYIAYGRDEQAEDILKLALQTQPERQ Sbjct: 614 PVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIAYGRDEQAEDILKLALQTQPERQ 673 Query: 356 ALHAKLLEIYAKRGDVDNFNRVALNLHALSGGLNEAWVKAAALGLTIDPTNPLYGGMPAE 415 ALHAKLLEIYAKR DV FNRVALNLHALSGGLNE WVKAAALGL IDPTNPLYGG P Sbjct: 674 ALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGLEIDPTNPLYGGQPEP 733 Query: 416 PEPEPEEAAGMEFDLSDFKAAEVQPEATPAPAAAMDLGKDIDFDLDLENGAKPDADEPIL 475 E AGMEFDL DFK+AE++ +ATPAP A MDLGKDIDFDLDLENGAKPDADEP+L Sbjct: 734 EPEPEPEEAGMEFDLDDFKSAEIRADATPAP-APMDLGKDIDFDLDLENGAKPDADEPLL 792 Query: 476 PASSGAASASMLLDSLDDAPAATTLADLDLSLPEDTPA-PSAANILEEDEESAFEQEMTT 534 PAS+ AASAS LLDSLDD P A++L+DLDLSLP++ A PSA N+LEEDEESAFE EMTT Sbjct: 793 PASTAAASASTLLDSLDDQPQASSLSDLDLSLPDEASAPPSATNLLEEDEESAFEAEMTT 852 Query: 535 KLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKSMIAALG 578 KLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAK M+A LG Sbjct: 853 KLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMMAGLG 896 >ref|YP_284092.1| hypothetical protein Daro_0866 [Dechloromonas aromatica RCB] gb|AAZ45622.1| conserved hypothetical protein [Dechloromonas aromatica RCB] Length = 1036 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 184/549 (33%), Positives = 271/549 (49%), Gaps = 50/549 (9%) Query: 1 MLIALYRANPDAFQGNNINRLRAGKILSIPDQPTAAAVDRDEARGMVVAQAQDFNAYRNK 60 ML+ L+++NPDAF G N+NRL++G IL+IP++ AV EA+ + VAQA D+NAYR K Sbjct: 223 MLVGLFQSNPDAFIGQNVNRLKSGAILNIPEKSAVEAVSPKEAKKIYVAQAADWNAYRQK 282 Query: 61 LAGQVANAPAGKAGSNRQSGGGKITARVEERS-GTQDARDRLELSRANKGRGKTGNAGAA 119 LA A PA S Q+ GKITA+VEE++ + ++D+L+++RA+ A AA Sbjct: 283 LAASTAKTPAKDETSGAQASSGKITAKVEEKAVPAEQSKDQLKVARADAAAKGAAAAKAA 342 Query: 120 AE-DKAASERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLTAQQQKPADAAKPAVAD 178 D+ A ++AL EA DR+ LEKNV+ LQKLLE+KN+ +A+L QQ P +P + Sbjct: 343 EAADQIAKDKALKEAQDRMATLEKNVNELQKLLEMKNQKLAEL---QQPPVKKEEPKAPE 399 Query: 179 NGAAKAENQPAEAATPTPAPTPAPAAATTPQPVASAKPTDKGDKSGGSFLDKVK------ 232 +P E A P PA AP P+ V KP + + K Sbjct: 400 VVKPVEPPKPVEIAKPAPAVEEAPKPVEPPKVVEETKPVEPVKPVEPPKPEAPKLEEKPK 459 Query: 233 -----------------ENPYIVAGAGVLVALLAAGGGVLAMRRRKKKTEDGPTEPTIEP 275 ++P + G G ++ALLA G +RR+ T+ E T P Sbjct: 460 VVAPPPAPAPVVEESLLDDPLPLVGGGGILALLA---GYFLFKRRR--TQSSALETTAAP 514 Query: 276 EPAPAPAPEPAAAIAEPSPEPVAEAP--AAEVAEAEPVAAAAPVEEAPVDPIAEADMYIA 333 P+ + P + P E ++ P ++ VDP+AEAD+Y+A Sbjct: 515 MPS-SLGPNSVFRMTGGQSVDTGNTPPQTGEFSQTGP----GTIDTDEVDPVAEADVYMA 569 Query: 334 YGRDEQAEDILKLALQTQPERQALHAKLLEIYAKRGDVDNFNRVALNLHALSGGLNEAWV 393 YGRD QAE+IL ALQ P+R A+HAKLLEIYA R + F +A L+A + G+ W Sbjct: 570 YGRDTQAEEILLEALQKDPQRTAIHAKLLEIYANRHSLKQFETLASELYAQTAGVGPDWE 629 Query: 394 KAAALGLTIDPTNPLYGGMPAEPEPEPEEAAGMEFDLSDFKAAEVQPEATPAPAAAMDLG 453 K AALG+ +DP+NPLY + + A + + + + E PEA ++ Sbjct: 630 KVAALGVGLDPSNPLYS---SSRTSDVSAATMVALPVEELELPEAVPEALSPLVGGVEPL 686 Query: 454 KDIDFDLDLENGAKPDADEPILPASS-GAASASMLLDSLDDAPAATTLADLDLSLPEDTP 512 +I + E D +LP + G + + D+ + + LD L E T Sbjct: 687 PEIGLADEFER------DTLVLPKETDGHEALGEDVSVADELASGSDAMTLDFDLGEQTI 740 Query: 513 APSAANILE 521 AP + E Sbjct: 741 APEVKGVAE 749 >gb|EGW61640.1| FimV N-terminal domain protein [Dechlorosoma suillum PS] Length = 1024 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 171/437 (39%), Positives = 231/437 (52%), Gaps = 34/437 (7%) Query: 1 MLIALYRANPDAFQGNNINRLRAGKILSIPDQPTAAAVDRDEARGMVVAQAQDFNAYRNK 60 ML+ LYRAN +AF G N+NRL+AGKIL++PD+ + AAV EAR +V AQ+ D+NAYR K Sbjct: 242 MLVGLYRANKEAFDGGNMNRLKAGKILAVPDKESVAAVSESEARKIVFAQSSDWNAYRRK 301 Query: 61 LAGQVANAPAGKAGSNRQSGGGKITARVEERSGTQDARDRLELSRANKG--RGKTGNAGA 118 LAG VA G+ Q+ G++TA+VE+++ A +G GK G A Sbjct: 302 LAGAVAQEAPKDDGAT-QAVAGRVTAKVEDKAAPAAAPKDQVKVAKTEGPATGKAGAGKA 360 Query: 119 AAEDKAASERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLTAQQQKPADAAKPAVAD 178 + ED A ++AL +AN+R+ LEKNV LQKLLELKN+ +ADL Q AA P A Sbjct: 361 SEEDLIAKDKALKDANERMAALEKNVSELQKLLELKNQNLADLQKQAAAKPAAAAPLPAA 420 Query: 179 NGAAKAEN--------------------QPAEAATPTPAPTPAPAAAT----TPQPVASA 214 A AE +PAEAA P P A A T TP P Sbjct: 421 APAKPAETAPVEPPKPEVKPEPPKVEEAKPAEAAKPEEKPAEAAAPETKPEPTPAPKPPV 480 Query: 215 KPTDKGDKSGGSFLDKVKENPYIVAGAGVLVALLAAGGGVLAMRRRKKKTEDGPTEPTIE 274 S +D++ +N ++ G V +A L G + +RRR++ T P Sbjct: 481 VVPPPAPVEEPSLVDELLDNLPLLGGGLVAIAGL---GALAVVRRRRQAPAGESTLPPTS 537 Query: 275 PEPAPAPAPEPAAAIAEPSPEPVAEAPAAEVAEAEPVAAAAPVEEAPVDPIAEADMYIAY 334 P+ + PA + ++A P ++ VDP+AEAD+Y+AY Sbjct: 538 SLSQPSLGANSVFKSTGGQSVDTSNTPATDFSQAGP----GTIDTDEVDPVAEADVYMAY 593 Query: 335 GRDEQAEDILKLALQTQPERQALHAKLLEIYAKRGDVDNFNRVALNLHALSGGLNEAWVK 394 GRD QAE+IL A+Q P+R A+H KLLEIYA R V F +A L+A +GG+ W K Sbjct: 594 GRDAQAEEILLEAMQKDPKRFAIHVKLLEIYANRKAVKQFETLASELYAQTGGVGAEWEK 653 Query: 395 AAALGLTIDPTNPLYGG 411 AAA+G +DP NPLYGG Sbjct: 654 AAAMGAKLDPANPLYGG 670 >ref|YP_003166482.1| hypothetical protein CAP2UW1_1225 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34553.1| conserved hypothetical protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1035 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 167/471 (35%), Positives = 232/471 (49%), Gaps = 59/471 (12%) Query: 1 MLIALYRANPDAFQGNNINRLRAGKILSIPDQPTAAAVDRDEARGMVVAQAQDFNAYRNK 60 ML+ L++AN DAF N+NRL+AG+ILSIPD+ + A+ +DEAR +VVAQ+ D+ YR K Sbjct: 221 MLVGLFQANQDAFDRGNMNRLKAGRILSIPDKGSLEAIPKDEARRVVVAQSTDWGGYRRK 280 Query: 61 LAGQVANAPAGKAGSNRQSGGGKITARVEERSG-TQDARDRLELSRANKGRGKTG-NAGA 118 LA A+AP + + RQ GKITARVE+R+ + +D+L++S+ K + Sbjct: 281 LAAGAADAPVPEEAA-RQQSVGKITARVEDRAAPAAEPKDQLKVSKTELAGSKPAVPSKR 339 Query: 119 AAEDKAASERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLTAQQ-----------QK 167 A ED A E+AL +AN+R+ LEKNV LQ+L+ELK++T+ADL Q +K Sbjct: 340 ADEDLIAKEKALKDANERLASLEKNVAELQRLVELKSQTLADLEKQAAGKGGAPAAETKK 399 Query: 168 PADAAKPAVADNGAAKAENQPAEAATPTPAPTPAPAAATTPQPVASAKPTDKGDK----- 222 + A+ V GA + P +P AA P A +KP+D K Sbjct: 400 TVEDARAPVTSPGAPAPGVVGGRSEVSPPPASPVVAAKPADVP-ADSKPSDVAAKPEPVP 458 Query: 223 --------------------------SGGSFLDKVKENPYIVAGAGVLVALLAAGGGVLA 256 + +E P LA GGGVLA Sbjct: 459 QEPKVEPKPEEPKPVAAPKPAVAPKAKAVAVTSPPEEEPGFFEALLTSTPFLAGGGGVLA 518 Query: 257 M---------RRRKKKTEDGPTEPTIEPEPAPAPAPEPAAAIAEPSPEPVAEAPAAEVAE 307 + R R + + TI P A S + + ++ Sbjct: 519 LLAAYWLARRRHRSETSRSLDATSTIAPPGDSLVANSVFHNTGGQSVDTSHSMAQTDFSQ 578 Query: 308 AEPVAAAAPVEEAPVDPIAEADMYIAYGRDEQAEDILKLALQTQPERQALHAKLLEIYAK 367 A P ++ VDP+AEAD+Y+AYGRD QAE+IL A Q P R A+H KLLEIY Sbjct: 579 AGP----GSIDTDEVDPVAEADVYMAYGRDAQAEEILLEAKQKDPRRHAIHLKLLEIYLG 634 Query: 368 RGDVDNFNRVALNLHALSGGLNEAWVKAAALGLTIDPTNPLYGGMPAEPEP 418 R DV F+ +A L +++GG+ W KAAA+GL +DP NPLYG P P Sbjct: 635 RKDVKPFDTLAAELFSVTGGVGVEWEKAAAMGLQLDPLNPLYGAAGTTPAP 685 >ref|YP_932547.1| putative type 4 pilus biogenesis [Azoarcus sp. BH72] emb|CAL93660.1| putative type 4 pilus biogenesis [Azoarcus sp. BH72] Length = 971 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 157/435 (36%), Positives = 218/435 (50%), Gaps = 27/435 (6%) Query: 1 MLIALYRANPDAFQGNNINRLRAGKILSIPDQPTAAAVDRDEARGMVVAQAQDFNAYRNK 60 ML+AL+RANP AF+GNNINRL+AG IL++P T +D EAR V+AQ+ DF+AYR + Sbjct: 203 MLVALFRANPAAFEGNNINRLKAGAILTVPPASTVQGLDPQEARREVLAQSADFDAYRRR 262 Query: 61 LAGQVANAPAGKAGSNRQSGGGKITARVEERSGTQDARDRLELSRANKGRGKTGNAGA-- 118 LA PA G Q+ GG+I RV+ + T D+L++SR G G A Sbjct: 263 LASSAVERPA--EGQVEQAAGGRIVPRVDAPASTPSG-DKLKVSRTQSGETAAGTEVANR 319 Query: 119 ---AAEDKAASERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLTAQQQKPADAAKPA 175 E+ + E+AL EAN R+ LE+N+ LQKLL+LK++++A A A Sbjct: 320 LQSLEEELVSREKALDEANARLAQLEQNIRELQKLLQLKSESLAQAQAAAGGAPAPATTP 379 Query: 176 VADNGAAKAENQPAEAATPTPAPTPAPAAATTPQPVASAKPTDKGDKSGGS--------- 226 A + P A+ P P AA T P A +KP + Sbjct: 380 APAPAAPAPADTPPAASAPAPGAEAPAAAVTPATPPAESKPAEAPKPKPKKVVPPPEPEP 439 Query: 227 ---FLDKVKENPYIVAGAGVLVALLAAGGGVLAMRRRKKKTEDGPTEPTIEPEPAPAPAP 283 FL+ + NP I+A AG + L L MR R K + I P P Sbjct: 440 EPGFLESMLGNPTILA-AGGGILALLLAYAGLRMRGRSAKKNATDSAALISEFP-----P 493 Query: 284 EPAAAIAEPSPEPVAEAPAAEVAEAEPVAAAAPVE-EAPVDPIAEADMYIAYGRDEQAED 342 E + + V + ++ + + + ++ + VDP+AEAD+Y+AYGRD QAE+ Sbjct: 494 ESSGVFGATGGQSVDTSNSSVIHTDFSQSGLSAIDADEGVDPVAEADVYMAYGRDAQAEE 553 Query: 343 ILKLALQTQPERQALHAKLLEIYAKRGDVDNFNRVALNLHALSGGLNEAWVKAAALGLTI 402 IL AL+ PER A+ KLLEIY+KR F +A L+A +GG W K A +G + Sbjct: 554 ILLDALKADPERLAIPLKLLEIYSKRKSAKQFESIASELYARTGGKGLDWEKTALMGRKL 613 Query: 403 DPTNPLYGGMPAEPE 417 DP NPLY EPE Sbjct: 614 DPDNPLYSSKTVEPE 628