BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4085.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum ... 533 e-149 ref|YP_004752526.1| tRNA pseudouridine synthase A [Collimonas fu... 364 1e-98 ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacte... 346 2e-93 ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas... 340 1e-91 ref|ZP_04577210.1| tRNA pseudouridine synthase A [Oxalobacter fo... 337 2e-90 >ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64775.1| tRNA pseudouridine synthase protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 276/302 (91%), Positives = 292/302 (96%), Gaps = 2/302 (0%) Query: 1 MTELSSPSEGLRRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALRRFSTTPIATTCAGR 60 MTEL +EGLRRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAAL+RFST PIATTCAGR Sbjct: 1 MTELDPQAEGLRRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALQRFSTQPIATTCAGR 60 Query: 61 TDSGVHALEQVVHFDTAIARDSFSWVRGTNAFLPATIAVRWACELPWVDDAAIAGATAAA 120 TDSGVHALEQ+VHFDT IARDSFSWVRGTNAFLP TIAVRWACELP+VDDAAIA +AA+ Sbjct: 61 TDSGVHALEQIVHFDTPIARDSFSWVRGTNAFLPPTIAVRWACELPYVDDAAIA--SAAS 118 Query: 121 QAAELHGAEREGAESLAQFGFHARFSAIARTYHYVLYNHAVRSPLLAGKAGWTFRPLDAD 180 QAAELHGA+R GA+SL+QFGFHARFSAIARTYHYVLYNHAVR+PLLAGKAGWTFRPLDAD Sbjct: 119 QAAELHGADRAGADSLSQFGFHARFSAIARTYHYVLYNHAVRTPLLAGKAGWTFRPLDAD 178 Query: 181 RMHRAAQYLIGEHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRN 240 RMHRAAQ+LIGEHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRN Sbjct: 179 RMHRAAQHLIGEHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRN 238 Query: 241 IVGSLIVVGSGKQGPEWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDSWALPQEARSWP 300 IVGSL+VVGSGKQ P+WMGQVLALRDRSRAAPTFMPDGLYLARVDYPD+WALPQE+R+WP Sbjct: 239 IVGSLVVVGSGKQEPDWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDAWALPQESRAWP 298 Query: 301 WL 302 WL Sbjct: 299 WL 300 >ref|YP_004752526.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331] gb|AEK61703.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331] Length = 280 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 186/293 (63%), Positives = 220/293 (75%), Gaps = 27/293 (9%) Query: 11 LRRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALRRFSTTPIATTCAGRTDSGVHALEQ 70 L R+VLGVQYDG WQGWQTQP +TVQD+LEAAL++F+ I TTCAGRTDSGVHALEQ Sbjct: 14 LNRIVLGVQYDGTPWQGWQTQPSGKTVQDRLEAALQKFAQGAIDTTCAGRTDSGVHALEQ 73 Query: 71 VVHFDTAIARDSFSWVRGTNAFLPATIAVRWACELPWVDDAAIAGATAAAQAAELHGAER 130 VVHFDTA++R++FSWVRG NAFLP +IAVRWA +LP + Sbjct: 74 VVHFDTALSRETFSWVRGLNAFLPPSIAVRWAHQLPLL---------------------A 112 Query: 131 EGAESLAQFGFHARFSAIARTYHYVLYNHAVRSPLLAGKAGWTFRPLDADRMHRAAQYLI 190 EG + FHARFSA ARTYHY+LYN+ VRSPLL GKAGW FRPL+ + M +AA +L+ Sbjct: 113 EGEDQ-----FHARFSATARTYHYLLYNNPVRSPLLEGKAGWVFRPLELELMRQAAAHLV 167 Query: 191 GEHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLIVVGS 250 G HDF++FRAVECQAKSPVR ME I + R GD+IVF+L+ANAFLHHMVRNIVGSLI G+ Sbjct: 168 GTHDFSAFRAVECQAKSPVRTMEEIRIERRGDLIVFSLRANAFLHHMVRNIVGSLIYAGN 227 Query: 251 GKQGPEWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDSWALPQE-ARSWPWL 302 + PEW+ ++LA RDR RAAPTFMPDGLYLA+V Y W LPQ+ A PWL Sbjct: 228 ASKPPEWLAELLAQRDRGRAAPTFMPDGLYLAQVAYDPKWRLPQQPAGVLPWL 280 >ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] sp|A6T009|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] Length = 271 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 171/291 (58%), Positives = 207/291 (71%), Gaps = 27/291 (9%) Query: 12 RRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALRRFSTTPIATTCAGRTDSGVHALEQV 71 +R+VLGVQYDG WQGWQTQ + TVQD+LE AL +F+ ++T CAGRTD+GVH LEQV Sbjct: 6 KRIVLGVQYDGTPWQGWQTQLNGLTVQDRLEFALSKFTLQTVSTVCAGRTDAGVHGLEQV 65 Query: 72 VHFDTAIARDSFSWVRGTNAFLPATIAVRWACELPWVDDAAIAGATAAAQAAELHGAERE 131 VHFDT + RD SWVRG N FLP +IAVRWA E+ D Sbjct: 66 VHFDTTLERDMSSWVRGVNTFLPPSIAVRWATEVAHNPDE-------------------- 105 Query: 132 GAESLAQFGFHARFSAIARTYHYVLYNHAVRSPLLAGKAGWTFRPLDADRMHRAAQYLIG 191 Q FHARFSA +R Y YVLYN+ VRSPLL GKAGW FR LD +RM AAQ+L+G Sbjct: 106 ------QDNFHARFSARSRMYQYVLYNNPVRSPLLEGKAGWVFRKLDVERMRTAAQHLLG 159 Query: 192 EHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLIVVGSG 251 EHDF++FR+V+CQAKSPV+ M SI + + GD+I+FTL ANAFLHHMVRNIVGSLI VG+G Sbjct: 160 EHDFSTFRSVQCQAKSPVKSMYSIKIEQRGDLIMFTLHANAFLHHMVRNIVGSLIYVGNG 219 Query: 252 KQGPEWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDSWALPQ-EARSWPW 301 Q P+W+ ++L RDR AAPTFMPDGLYLA++DY W LPQ E +++ W Sbjct: 220 AQQPDWLKELLDGRDRKFAAPTFMPDGLYLAKIDYDPKWQLPQLEVQNFLW 270 >ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas arsenicoxydans] sp|A4G4G0|TRUA_HERAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I emb|CAL61397.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Herminiimonas arsenicoxydans] Length = 275 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 173/291 (59%), Positives = 210/291 (72%), Gaps = 29/291 (9%) Query: 12 RRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALRRFSTTPIATTCAGRTDSGVHALEQV 71 RR+VLGVQYDGA WQGWQTQ + TVQD+LE AL +F+ I T CAGRTD+GVHALEQV Sbjct: 12 RRIVLGVQYDGAPWQGWQTQLNGLTVQDKLEFALYKFTQQTITTACAGRTDAGVHALEQV 71 Query: 72 VHFDTAIARDSFSWVRGTNAFLPATIAVRWACELPWVDDAAIAGATAAAQAAELHGAERE 131 VHFDT + RD SWVRG N FLP++IAVRWA E+ A AE Sbjct: 72 VHFDTTLERDMQSWVRGVNTFLPSSIAVRWASEV-------------AHDPAE------- 111 Query: 132 GAESLAQFGFHARFSAIARTYHYVLYNHAVRSPLLAGKAGWTFRPLDADRMHRAAQYLIG 191 FHARFSA +RTYHY+LYN+ VRSPLL GKAGW FR LD +M AA +L+G Sbjct: 112 --------NFHARFSARSRTYHYMLYNNPVRSPLLEGKAGWVFRALDIAKMQEAAAHLLG 163 Query: 192 EHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLIVVGSG 251 +HDF++FR+V+CQAKSPV+ M +I + R GD+I+FT+ ANAFLHHMVRNIVGSLI VG+G Sbjct: 164 QHDFSAFRSVQCQAKSPVKTMHAIKIERRGDLIMFTVHANAFLHHMVRNIVGSLIYVGNG 223 Query: 252 KQGPEWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDSWALPQ-EARSWPW 301 Q P W+ +VLA ++R AAPTFMPDGLYLA++DY W LPQ E +++ W Sbjct: 224 TQAPSWLKEVLAGQERKFAAPTFMPDGLYLAKIDYDPKWQLPQTEIQNFLW 274 >ref|ZP_04577210.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] gb|EEO28172.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] Length = 264 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 161/290 (55%), Positives = 203/290 (70%), Gaps = 29/290 (10%) Query: 11 LRRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALRRFSTTPIATTCAGRTDSGVHALEQ 70 ++R+ LG++YDG W+GWQTQP TVQDQLEAA+R+F+ +ATTCAGRTD+GVHA EQ Sbjct: 4 MKRIALGIEYDGTGWRGWQTQPDGMTVQDQLEAAIRQFTRMDMATTCAGRTDAGVHATEQ 63 Query: 71 VVHFDTAIARDSFSWVRGTNAFLPATIAVRWACELPWVDDAAIAGATAAAQAAELHGAER 130 VVH DT + R SWVRG N++LP++IAVRWACE+P D Sbjct: 64 VVHLDTGLERLPVSWVRGINSYLPSSIAVRWACEVPGGKD-------------------- 103 Query: 131 EGAESLAQFGFHARFSAIARTYHYVLYNHAVRSPLLAGKAGWTFRPLDADRMHRAAQYLI 190 GFHAR SAIAR Y Y++YN VRSPL +AGW FRPLD + M A +L+ Sbjct: 104 ---------GFHARSSAIARRYRYLVYNSPVRSPLWKNRAGWVFRPLDLEWMREGAGFLL 154 Query: 191 GEHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLIVVGS 250 GEHDF++FRA ECQ+ +PV+ M I + + G++IVFT +ANAFLHHM+RNIVGSLIVVG Sbjct: 155 GEHDFSAFRAAECQSITPVKTMNGIGIEKQGNLIVFTFEANAFLHHMIRNIVGSLIVVGK 214 Query: 251 GKQGPEWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDSWALPQEARSWP 300 G + P+WM ++L RDRS+AAPTFMPDGLYL+RV Y + W LPQ +P Sbjct: 215 GNRPPKWMKELLESRDRSQAAPTFMPDGLYLSRVFYEEKWGLPQREDVFP 264