BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4083.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776681.1| tryptophan synthase subunit beta [Herbaspiri... 822 0.0 ref|YP_001353854.1| tryptophan synthase subunit beta [Janthinoba... 748 0.0 ref|YP_001099526.1| tryptophan synthase subunit beta [Herminiimo... 739 0.0 gb|ADC94819.1| putative tryptophan synthase beta subunit TrpB [C... 731 0.0 ref|YP_004752528.1| tryptophan synthase subunit beta [Collimonas... 722 0.0 >ref|YP_003776681.1| tryptophan synthase subunit beta [Herbaspirillum seropedicae SmR1] gb|ADJ64773.1| tryptophan synthase (beta chain) protein [Herbaspirillum seropedicae SmR1] Length = 419 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 408/419 (97%), Positives = 416/419 (99%) Query: 17 MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELRDAYA 76 MKELNPLGGFAERQAIPAAALHQTAHYNLPD+RGHFGPYGGSFVSETLTLALNELR+AYA Sbjct: 1 MKELNPLGGFAERQAIPAAALHQTAHYNLPDSRGHFGPYGGSFVSETLTLALNELREAYA 60 Query: 77 KYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEIAGGAQIYFKREDLNHTGAHKINNVI 136 +YQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSE+AGGAQIYFKREDLNHTGAHKINNVI Sbjct: 61 RYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEMAGGAQIYFKREDLNHTGAHKINNVI 120 Query: 137 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 196 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL Sbjct: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180 Query: 197 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 256 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC Sbjct: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240 Query: 257 IQQMPEIASRQPDYVVACVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 316 IQQMPEIASRQPDYVVA VGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT Sbjct: 241 IQQMPEIASRQPDYVVAAVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 300 Query: 317 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSARASYACITDEEA 376 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDS RASYACITD+EA Sbjct: 301 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSGRASYACITDDEA 360 Query: 377 LEAFHNCCRIEGIIPALESSHALAHAAKLAATLPKDKIVLVNLSGRGDKDMHTVQQRQG 435 LEAF+ CCRIEGIIPALESSHALAHAAKLAATLP+D+IVLVNLSGRGDKDMHTVQQRQG Sbjct: 361 LEAFNTCCRIEGIIPALESSHALAHAAKLAATLPRDQIVLVNLSGRGDKDMHTVQQRQG 419 >ref|YP_001353854.1| tryptophan synthase subunit beta [Janthinobacterium sp. Marseille] gb|ABR88359.1| tryptophan synthase beta chain [Janthinobacterium sp. Marseille] Length = 423 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 359/419 (85%), Positives = 387/419 (92%) Query: 17 MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELRDAYA 76 MKEL+ LG FAERQAI +ALHQTA YNLPDARGHFGPYGGSFV+ETL+ AL EL++AYA Sbjct: 1 MKELDALGSFAERQAIAESALHQTAPYNLPDARGHFGPYGGSFVAETLSHALAELKEAYA 60 Query: 77 KYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEIAGGAQIYFKREDLNHTGAHKINNVI 136 Y D FLAEFH +LKHFVGRPSP+YHAKRWSE GGAQIYFKREDLNHTGAHKINNVI Sbjct: 61 HYSKDPSFLAEFHYDLKHFVGRPSPIYHAKRWSEKMGGAQIYFKREDLNHTGAHKINNVI 120 Query: 137 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 196 GQALLAKRMGK RIIAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ QNVYRM LL Sbjct: 121 GQALLAKRMGKPRIIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQAQNVYRMKLL 180 Query: 197 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 256 GA VVPVESGSKTLKDALNEAMRDWVTN+E TFYIIGTVAGPHPYPMMVRDFQSVIGNEC Sbjct: 181 GATVVPVESGSKTLKDALNEAMRDWVTNIENTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240 Query: 257 IQQMPEIASRQPDYVVACVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 316 I+QMPE+ SRQPDYVVAC+GGGSNAMGIFYPYI++ +V+LVGVEAAG+GL++G+HSASLT Sbjct: 241 IEQMPEMTSRQPDYVVACIGGGSNAMGIFYPYIEHKNVQLVGVEAAGEGLESGKHSASLT 300 Query: 317 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSARASYACITDEEA 376 GSPGVLHGNRTYLLQD NGQIIETHSVSAGLDYPGVGPEH+WLKDS RA Y ITDEEA Sbjct: 301 AGSPGVLHGNRTYLLQDENGQIIETHSVSAGLDYPGVGPEHSWLKDSGRAQYVSITDEEA 360 Query: 377 LEAFHNCCRIEGIIPALESSHALAHAAKLAATLPKDKIVLVNLSGRGDKDMHTVQQRQG 435 L+AFH+CC IEGIIPALESSHAL++AAKLAATLPKDK+VL NLSGRGDKDMHTV QR G Sbjct: 361 LQAFHDCCHIEGIIPALESSHALSYAAKLAATLPKDKVVLANLSGRGDKDMHTVAQRMG 419 >ref|YP_001099526.1| tryptophan synthase subunit beta [Herminiimonas arsenicoxydans] emb|CAL61399.1| tryptophan synthase, beta chain [Herminiimonas arsenicoxydans] Length = 423 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 351/419 (83%), Positives = 385/419 (91%) Query: 17 MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELRDAYA 76 MKEL+ LG +AERQA+ ALHQTA YNLPDARGHFG YGGSFV+ETL+ AL ELRDAYA Sbjct: 1 MKELDALGTYAERQAVSETALHQTAPYNLPDARGHFGQYGGSFVAETLSHALAELRDAYA 60 Query: 77 KYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEIAGGAQIYFKREDLNHTGAHKINNVI 136 Y D FLAEFH +LKHFVGRPSP+YHAKRWSE GGAQIYFKREDLNHTGAHKINNVI Sbjct: 61 HYSKDPAFLAEFHYDLKHFVGRPSPIYHAKRWSEKMGGAQIYFKREDLNHTGAHKINNVI 120 Query: 137 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 196 GQALLA+RMGKKRIIAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ QNVYRM LL Sbjct: 121 GQALLARRMGKKRIIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQAQNVYRMKLL 180 Query: 197 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 256 GA VVPVESGSKTLKDALNEAMRDWVTN+E TFYIIGTVAGPHPYPMMVRDFQSVIGNEC Sbjct: 181 GATVVPVESGSKTLKDALNEAMRDWVTNIENTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240 Query: 257 IQQMPEIASRQPDYVVACVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 316 + QMPE+ SRQPDYV+AC+GGGSNAMGIFYPYI++ +V+L+GVEAAG+GL++G+HSASL Sbjct: 241 LTQMPEMTSRQPDYVIACIGGGSNAMGIFYPYIEHKNVQLIGVEAAGEGLESGKHSASLM 300 Query: 317 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSARASYACITDEEA 376 GSPGVLHGNRTYLLQD NGQI+ETHS+SAGLDYPGVGPEHAWLKDS RA Y ITDE+A Sbjct: 301 AGSPGVLHGNRTYLLQDENGQIMETHSISAGLDYPGVGPEHAWLKDSGRAQYVSITDEDA 360 Query: 377 LEAFHNCCRIEGIIPALESSHALAHAAKLAATLPKDKIVLVNLSGRGDKDMHTVQQRQG 435 L+AFH+CC IEGIIPALESSHAL++AAKLAATLPK+++VLVNLSGRGDKDMHTV QR G Sbjct: 361 LQAFHDCCHIEGIIPALESSHALSYAAKLAATLPKEQVVLVNLSGRGDKDMHTVAQRMG 419 >gb|ADC94819.1| putative tryptophan synthase beta subunit TrpB [Collimonas sp. MPS11E8] Length = 421 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 359/417 (86%), Positives = 391/417 (93%) Query: 17 MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELRDAYA 76 MKEL+PL +AERQ + A+ L Q+A Y+LPDA+GHFG YGGSFVSETLTLAL+EL+ AYA Sbjct: 1 MKELSPLEQYAERQPLAASTLRQSAKYSLPDAKGHFGMYGGSFVSETLTLALSELQQAYA 60 Query: 77 KYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEIAGGAQIYFKREDLNHTGAHKINNVI 136 KYQ++ QFLAEFH+ELKHFVGRPSP+YHAKRWSE GGAQIYFKREDLNHTGAHKINNVI Sbjct: 61 KYQNEPQFLAEFHSELKHFVGRPSPIYHAKRWSEQMGGAQIYFKREDLNHTGAHKINNVI 120 Query: 137 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 196 GQALLA+RMGK R+IAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ+QNVYRMNLL Sbjct: 121 GQALLARRMGKPRVIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQMQNVYRMNLL 180 Query: 197 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 256 GAKVVPVESGSKTLKDALNEAMRDWVTNVE TFYIIGTVAGPHPYPMMVRDFQSVIGNEC Sbjct: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVEDTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240 Query: 257 IQQMPEIASRQPDYVVACVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 316 + QMPE+A RQPD+VVACVGGGSNAMGIFYPYID+ DV LVGVEAAG+GLD+G+HSASLT Sbjct: 241 LTQMPEMAGRQPDHVVACVGGGSNAMGIFYPYIDHHDVALVGVEAAGEGLDSGKHSASLT 300 Query: 317 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSARASYACITDEEA 376 LGSPGVLHGNRTYLLQD NGQIIETHSVSAGLDYPGVGPEHAWLKDS RA+Y +TD+EA Sbjct: 301 LGSPGVLHGNRTYLLQDENGQIIETHSVSAGLDYPGVGPEHAWLKDSGRATYETVTDDEA 360 Query: 377 LEAFHNCCRIEGIIPALESSHALAHAAKLAATLPKDKIVLVNLSGRGDKDMHTVQQR 433 L AFH CCRIEGIIPALESSHALA+AA+LAATLPKDKI+L NLSGRGDKDMHTV +R Sbjct: 361 LAAFHTCCRIEGIIPALESSHALAYAARLAATLPKDKIILANLSGRGDKDMHTVAER 417 >ref|YP_004752528.1| tryptophan synthase subunit beta [Collimonas fungivorans Ter331] gb|AEK61705.1| Tryptophan synthase beta chain [Collimonas fungivorans Ter331] Length = 420 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 356/417 (85%), Positives = 385/417 (92%) Query: 17 MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELRDAYA 76 MKE PL +AERQ + L Q+A YNLPDA+GHFG YGGSFVSETLTLAL+EL+ AYA Sbjct: 1 MKEFTPLEQYAERQPLANTTLRQSAQYNLPDAKGHFGMYGGSFVSETLTLALSELQQAYA 60 Query: 77 KYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEIAGGAQIYFKREDLNHTGAHKINNVI 136 KYQ++ QFLAEFH+ELKH+VGRPSP+YHAKRWSE GGAQIYFKREDLNHTGAHKINNVI Sbjct: 61 KYQNEPQFLAEFHSELKHYVGRPSPIYHAKRWSEQMGGAQIYFKREDLNHTGAHKINNVI 120 Query: 137 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 196 GQALLAKRMGK R+IAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ+QNVYRMNLL Sbjct: 121 GQALLAKRMGKPRVIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQMQNVYRMNLL 180 Query: 197 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 256 GAKVVPVESGSKTLKDALNEAMRDWVTNVE TFYIIGTVAGPHPYPMMVRDFQSVIGNEC Sbjct: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVEDTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240 Query: 257 IQQMPEIASRQPDYVVACVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 316 + QMPE+ RQPD+VVACVGGGSNAMGIFYPYI++ DV LVGVEAAG+GL +G+HSASLT Sbjct: 241 LVQMPEMTGRQPDHVVACVGGGSNAMGIFYPYINHHDVALVGVEAAGEGLASGKHSASLT 300 Query: 317 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSARASYACITDEEA 376 LGSPGVLHGNRTYLLQDANGQIIETHS+SAGLDYPGVGPEHAWLKD RA+Y +TD+EA Sbjct: 301 LGSPGVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAWLKDCGRATYETVTDDEA 360 Query: 377 LEAFHNCCRIEGIIPALESSHALAHAAKLAATLPKDKIVLVNLSGRGDKDMHTVQQR 433 L AFH CCRIEGIIPALESSHALA+AAKLAATLPKDKIVL NLSGRGDKDMHTV +R Sbjct: 361 LAAFHTCCRIEGIIPALESSHALAYAAKLAATLPKDKIVLANLSGRGDKDMHTVAER 417