BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4082.p         (208 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776680.1| tryptophan synthase subunit alpha [Herbaspir...   377   e-103
ref|YP_004752529.1| tryptophan synthase subunit alpha [Collimona...   322   2e-86
gb|ADC94818.1| putative tryptophan synthase alpha subunit TrpA [...   316   1e-84
ref|ZP_08273838.1| Tryptophan synthase alpha chain [Oxalobactera...   303   1e-80
ref|YP_001099527.1| tryptophan synthase subunit alpha [Herminiim...   290   9e-77

>ref|YP_003776680.1| tryptophan synthase subunit alpha [Herbaspirillum seropedicae SmR1]
 gb|ADJ64772.1| tryptophan synthase (alpha chain) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score =  377 bits (967), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/208 (95%), Positives = 203/208 (97%)

Query: 1   MAEGPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAA 60
           MAEGPVIQRACERALKF +STHDVL YVREFR+TNT TP+VLMGYANPIERFGVDAFIAA
Sbjct: 58  MAEGPVIQRACERALKFGISTHDVLGYVREFRKTNTHTPIVLMGYANPIERFGVDAFIAA 117

Query: 61  ASEAGVDGTIVVDYPPEECEEFSQKMQAKGMDPIFLLAPTSSEERIRQVAAVSSGFCYYV 120
           ASEAGVDGTIVVDYPPEECEEF+QKMQAKGMDPIFLLAPTSS+ERIRQVAAVSSGFCYYV
Sbjct: 118 ASEAGVDGTIVVDYPPEECEEFAQKMQAKGMDPIFLLAPTSSQERIRQVAAVSSGFCYYV 177

Query: 121 SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII 180
           SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII
Sbjct: 178 SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII 237

Query: 181 AELENTPHDQACAAVQAFVTDIRQALDA 208
           AELENTP DQAC AVQAFVTDIRQALDA
Sbjct: 238 AELENTPQDQACDAVQAFVTDIRQALDA 265


>ref|YP_004752529.1| tryptophan synthase subunit alpha [Collimonas fungivorans Ter331]
 gb|AEK61706.1| Tryptophan synthase alpha chain [Collimonas fungivorans Ter331]
          Length = 265

 Score =  322 bits (826), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 167/207 (80%), Positives = 185/207 (89%)

Query: 1   MAEGPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAA 60
           MAEGPVIQRACERALKF VS HDVL YVREFRQ+N +TPVVLMGYANP+ER GVDAFIAA
Sbjct: 58  MAEGPVIQRACERALKFGVSLHDVLAYVREFRQSNNSTPVVLMGYANPLERMGVDAFIAA 117

Query: 61  ASEAGVDGTIVVDYPPEECEEFSQKMQAKGMDPIFLLAPTSSEERIRQVAAVSSGFCYYV 120
           A EAGVDG+IVVDYPPEECEEF++KMQA GMDPIFLLAPTS+EERI QVA VSSGF YYV
Sbjct: 118 AKEAGVDGSIVVDYPPEECEEFAEKMQANGMDPIFLLAPTSTEERIMQVAKVSSGFTYYV 177

Query: 121 SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII 180
           SLKGVTGA +IDT EVA R+AAIR+HVKLPI VGFGIRD ATA+ V  V+DAVVIGSRII
Sbjct: 178 SLKGVTGAANIDTGEVAARVAAIRKHVKLPIGVGFGIRDAATAKAVAQVSDAVVIGSRII 237

Query: 181 AELENTPHDQACAAVQAFVTDIRQALD 207
            ELENTP +QA AAV++F++ IR+ALD
Sbjct: 238 QELENTPREQAVAAVESFLSGIRKALD 264


>gb|ADC94818.1| putative tryptophan synthase alpha subunit TrpA [Collimonas sp.
           MPS11E8]
          Length = 265

 Score =  316 bits (810), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 163/207 (78%), Positives = 182/207 (87%)

Query: 1   MAEGPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAA 60
           MAEGPVIQRACERALKF VS HDVL YVREFRQTN+ TPVVLMGYANP+ER G+DAFIAA
Sbjct: 58  MAEGPVIQRACERALKFGVSLHDVLGYVREFRQTNSRTPVVLMGYANPLERMGIDAFIAA 117

Query: 61  ASEAGVDGTIVVDYPPEECEEFSQKMQAKGMDPIFLLAPTSSEERIRQVAAVSSGFCYYV 120
           A EAGVDG+IVVDYPPEECEEF+ KMQA GMDPIFLLAPTS+EERI+QVA V  GF YYV
Sbjct: 118 AKEAGVDGSIVVDYPPEECEEFAAKMQANGMDPIFLLAPTSTEERIKQVAKVGGGFTYYV 177

Query: 121 SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII 180
           SLKGVTGA +IDTAEVA R+AAIR+HVKLPI VGFGIRD ATA+ V  V+DA+VIGSRII
Sbjct: 178 SLKGVTGAANIDTAEVAARVAAIRKHVKLPIGVGFGIRDAATAKAVAQVSDAIVIGSRII 237

Query: 181 AELENTPHDQACAAVQAFVTDIRQALD 207
            ELENTP  +A  AV++F++ IR+ALD
Sbjct: 238 QELENTPPGKAVEAVESFLSGIRKALD 264


>ref|ZP_08273838.1| Tryptophan synthase alpha chain [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32702.1| Tryptophan synthase alpha chain [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 260

 Score =  303 bits (776), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 163/208 (78%), Positives = 178/208 (85%)

Query: 1   MAEGPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAA 60
           MAEGPVIQRACERALK+ V   DVL++VREFR+T+ TTPVVLMGYANPIER G   FIAA
Sbjct: 51  MAEGPVIQRACERALKYGVGLRDVLEFVREFRETDATTPVVLMGYANPIERMGQQVFIAA 110

Query: 61  ASEAGVDGTIVVDYPPEECEEFSQKMQAKGMDPIFLLAPTSSEERIRQVAAVSSGFCYYV 120
           A+ AGVDGTIVVDYPPEECEEF+  MQA+G+DPIFLLAPTS+E RIRQVAA   GFCYYV
Sbjct: 111 AAAAGVDGTIVVDYPPEECEEFAAGMQAEGLDPIFLLAPTSTEARIRQVAAAGRGFCYYV 170

Query: 121 SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII 180
           SLKGVTGAG+ID A+V+ERIAAIRQHVKLPIAVGFGIRDGATAR + SVADAVVIGSRII
Sbjct: 171 SLKGVTGAGNIDIADVSERIAAIRQHVKLPIAVGFGIRDGATARAIASVADAVVIGSRII 230

Query: 181 AELENTPHDQACAAVQAFVTDIRQALDA 208
            ELE TPHD+A      FV  IR ALDA
Sbjct: 231 QELETTPHDKAVETAHNFVAGIRAALDA 258


>ref|YP_001099527.1| tryptophan synthase subunit alpha [Herminiimonas arsenicoxydans]
 sp|A4G4G3|TRPA_HERAR RecName: Full=Tryptophan synthase alpha chain
 emb|CAL61400.1| tryptophan synthase, alpha chain [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  290 bits (742), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 153/207 (73%), Positives = 176/207 (85%)

Query: 1   MAEGPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAA 60
           MAEGPVIQRACERALKFNVS HDVL +V EFR+T+TTTPVVLMGYANPIER G  AF+ A
Sbjct: 58  MAEGPVIQRACERALKFNVSLHDVLGFVSEFRKTDTTTPVVLMGYANPIERMGQTAFVLA 117

Query: 61  ASEAGVDGTIVVDYPPEECEEFSQKMQAKGMDPIFLLAPTSSEERIRQVAAVSSGFCYYV 120
           A  AGVDGTIVVDYPPEECEEF+  ++A  MDPIFLL+PTS+EERI+QVA   SGF YYV
Sbjct: 118 AKAAGVDGTIVVDYPPEECEEFAATLKANDMDPIFLLSPTSTEERIQQVAKFGSGFSYYV 177

Query: 121 SLKGVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRII 180
           SLKGVTG+ +IDT +VA+RI AIR+HVKLPI VGFGIRD ATA+ V +V+DAVVIGSRII
Sbjct: 178 SLKGVTGSANIDTQDVAQRIEAIRKHVKLPIGVGFGIRDAATAKAVATVSDAVVIGSRII 237

Query: 181 AELENTPHDQACAAVQAFVTDIRQALD 207
            ELENTP ++A  A Q F++ IR+ALD
Sbjct: 238 QELENTPRERAVEAAQTFISGIRKALD 264