BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4078.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776676.1| colicin V production transmembrane protein [...   169   1e-40
ref|YP_001099531.1| membrane protein required for colicin V prod...   122   2e-26
emb|CAL61404.2| putative colicin V production protein [Herminiim...   122   2e-26
ref|YP_001353849.1| colicin V production transmembrane protein [...   114   4e-24
ref|ZP_04577203.1| colicin V production transmembrane protein [O...   112   2e-23

>ref|YP_003776676.1| colicin V production transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64768.1| colicin V production transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 166

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 103/116 (88%), Positives = 109/116 (93%)

Query: 1   MLPDVVPGELTRLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARG 60
           MLP++VPGELTRLIVAFIALFIGTRLL+ALVA+TL ELVKATGL  LDRTLGS FGVARG
Sbjct: 51  MLPEMVPGELTRLIVAFIALFIGTRLLVALVARTLSELVKATGLTLLDRTLGSFFGVARG 110

Query: 61  VLLVVAVALLCGTTAIPQQNFWKQARFSPWVEQAAEAVLPYLPGKLAEHVSFSTPV 116
           VLLVV  ALLCGTTAIPQQ FWK+ARFSPWVEQAAEAVLPYLPGKLAEHVSF+TPV
Sbjct: 111 VLLVVVAALLCGTTAIPQQAFWKEARFSPWVEQAAEAVLPYLPGKLAEHVSFATPV 166


>ref|YP_001099531.1| membrane protein required for colicin V production [Herminiimonas
           arsenicoxydans]
          Length = 127

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/112 (59%), Positives = 81/112 (72%)

Query: 1   MLPDVVPGELTRLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARG 60
           +LPD+VPG  TRLIV FI LFIG R+LM L+   L  +VKA+GL   DR LG +FG+ARG
Sbjct: 16  LLPDMVPGNTTRLIVGFIVLFIGVRILMGLLTMALDAVVKASGLTLADRGLGGLFGLARG 75

Query: 61  VLLVVAVALLCGTTAIPQQNFWKQARFSPWVEQAAEAVLPYLPGKLAEHVSF 112
           +L+V+A  LLCG TAIPQQ FWK+A FSP  E AA  V P+LPG  A H+ F
Sbjct: 76  LLIVLAGVLLCGMTAIPQQGFWKEALFSPLAETAALTVKPFLPGDFARHIKF 127


>emb|CAL61404.2| putative colicin V production protein [Herminiimonas
           arsenicoxydans]
          Length = 162

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/112 (59%), Positives = 81/112 (72%)

Query: 1   MLPDVVPGELTRLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARG 60
           +LPD+VPG  TRLIV FI LFIG R+LM L+   L  +VKA+GL   DR LG +FG+ARG
Sbjct: 51  LLPDMVPGNTTRLIVGFIVLFIGVRILMGLLTMALDAVVKASGLTLADRGLGGLFGLARG 110

Query: 61  VLLVVAVALLCGTTAIPQQNFWKQARFSPWVEQAAEAVLPYLPGKLAEHVSF 112
           +L+V+A  LLCG TAIPQQ FWK+A FSP  E AA  V P+LPG  A H+ F
Sbjct: 111 LLIVLAGVLLCGMTAIPQQGFWKEALFSPLAETAALTVKPFLPGDFARHIKF 162


>ref|YP_001353849.1| colicin V production transmembrane protein [Janthinobacterium sp.
           Marseille]
 gb|ABR89350.1| colicin V production transmembrane protein [Janthinobacterium sp.
           Marseille]
          Length = 162

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/111 (58%), Positives = 82/111 (73%)

Query: 2   LPDVVPGELTRLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGV 61
           LP++VPG+  RLIVAFI LFIG R+LM L+   L  ++KA+GL   DR LG +FG+ARG+
Sbjct: 52  LPEMVPGKTARLIVAFIVLFIGVRILMGLLTMALDAVIKASGLTLADRGLGGLFGLARGL 111

Query: 62  LLVVAVALLCGTTAIPQQNFWKQARFSPWVEQAAEAVLPYLPGKLAEHVSF 112
           L+V+A  LLCG TAIPQQ FWK A FSP  E AA  V P+LPG+ A+H+ F
Sbjct: 112 LIVLAAVLLCGMTAIPQQPFWKNALFSPLAETAAHTVKPFLPGEFAQHIEF 162


>ref|ZP_04577203.1| colicin V production transmembrane protein [Oxalobacter formigenes
           HOxBLS]
 gb|EEO28165.1| colicin V production transmembrane protein [Oxalobacter formigenes
           HOxBLS]
          Length = 162

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/111 (51%), Positives = 84/111 (75%)

Query: 2   LPDVVPGELTRLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGV 61
           LP  + G++ R+IVAF+ALFIGTR++M L+AK    ++ A+GL F+DR LG++FG+A+G 
Sbjct: 52  LPQAISGDVLRVIVAFVALFIGTRIVMMLLAKLASLVLHASGLTFVDRLLGALFGLAKGA 111

Query: 62  LLVVAVALLCGTTAIPQQNFWKQARFSPWVEQAAEAVLPYLPGKLAEHVSF 112
           L+ +A+ L+CG T +PQQ FWK A FSP  E AA++V+PYLPG   E++ +
Sbjct: 112 LIALALVLICGMTRVPQQPFWKNAMFSPVAEAAAKSVMPYLPGYFVEYIHY 162