BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4074.p (198 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776673.1| Rossmann fold nucleotide-binding protein [He... 395 e-108 ref|YP_004752536.1| Lysine decarboxylase family [Collimonas fung... 290 9e-77 ref|YP_001099534.1| putative signal peptide [Herminiimonas arsen... 277 8e-73 ref|YP_001353846.1| hypothetical protein mma_2156 [Janthinobacte... 276 1e-72 ref|YP_001858256.1| hypothetical protein Bphy_2031 [Burkholderia... 238 4e-61 >ref|YP_003776673.1| Rossmann fold nucleotide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ64765.1| Rossmann fold nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 198 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 188/198 (94%), Positives = 195/198 (98%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 MKSICVYCGSSPGASPAYAEAARKLA+EMV NNIALVYGGGNVGLMGIIASEVM+LGGEA Sbjct: 1 MKSICVYCGSSPGASPAYAEAARKLAREMVNNNIALVYGGGNVGLMGIIASEVMQLGGEA 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW Sbjct: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 AQLGFHYKPICLYNV+GFY+NLIAFVDHLVSQRFVSSDQSGLMMHEADP +LI+RFQTF Sbjct: 121 AQLGFHYKPICLYNVNGFYDNLIAFVDHLVSQRFVSSDQSGLMMHEADPARLIQRFQTFT 180 Query: 181 PTYKTKWADREAVANLVP 198 PTYKTKWADREAVANL+P Sbjct: 181 PTYKTKWADREAVANLLP 198 >ref|YP_004752536.1| Lysine decarboxylase family [Collimonas fungivorans Ter331] gb|AEK61713.1| Lysine decarboxylase family [Collimonas fungivorans Ter331] Length = 196 Score = 290 bits (741), Expect = 9e-77, Method: Composition-based stats. Identities = 135/193 (69%), Positives = 163/193 (84%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 +KS+CVYCGSSPGA+P YAEAAR LAQ MV+ +IALVYGGGNVGLMGIIA EV++LGG A Sbjct: 4 IKSLCVYCGSSPGATPVYAEAARGLAQAMVEQDIALVYGGGNVGLMGIIADEVLRLGGRA 63 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 TGVIP+ALL KELGH GLT+LHIVKDMHERKAMMA+LSDGF+AMPGG+GTLEELFEV TW Sbjct: 64 TGVIPQALLQKELGHKGLTQLHIVKDMHERKAMMADLSDGFIAMPGGVGTLEELFEVFTW 123 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 AQLGFH KPI L NVDGFY+ L+ F+ H+VSQRF+ +Q+ +++ EA +L++RF++F Sbjct: 124 AQLGFHQKPIGLLNVDGFYDGLLQFIQHMVSQRFLKGEQAEILIAEAHAAELLQRFKSFV 183 Query: 181 PTYKTKWADREAV 193 P KW DR + Sbjct: 184 PHLVPKWLDRNTI 196 >ref|YP_001099534.1| putative signal peptide [Herminiimonas arsenicoxydans] emb|CAL61407.1| putative lysine decarboxylase [Herminiimonas arsenicoxydans] Length = 198 Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats. Identities = 135/197 (68%), Positives = 161/197 (81%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 MKS+CVYCGSS GA P YA+AAR LA EMV+ +IALVYGGGNVGLMG+IA+EV++LGG A Sbjct: 1 MKSLCVYCGSSFGAKPVYADAARTLAGEMVRQDIALVYGGGNVGLMGVIANEVLRLGGTA 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 TGVIP+ALLDKE+GH LT LH+VKDMHERKAMMAELSDGF+AMPGG+GTLEELFEVLTW Sbjct: 61 TGVIPQALLDKEVGHTQLTHLHVVKDMHERKAMMAELSDGFIAMPGGIGTLEELFEVLTW 120 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 +QLGFH KP+ + NVDGFY+ LIAF+ + V+Q FV ++Q+ LMMHE +L+ R QTF Sbjct: 121 SQLGFHEKPVGVLNVDGFYDGLIAFLQNQVAQGFVKANQAALMMHEKSASELLHRLQTFI 180 Query: 181 PTYKTKWADREAVANLV 197 P TK D A L+ Sbjct: 181 PQPSTKVLDALAAKTLL 197 >ref|YP_001353846.1| hypothetical protein mma_2156 [Janthinobacterium sp. Marseille] gb|ABR89353.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 198 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 134/198 (67%), Positives = 160/198 (80%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 MKS+CVYCGSS G P YAEAAR LA+EMV + I+LVYGGGNVGLMG+IA+E+++LGG+A Sbjct: 1 MKSLCVYCGSSYGVKPVYAEAARALAKEMVDHQISLVYGGGNVGLMGVIANEILRLGGQA 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 TGVIP+AL+DKE+GH LT LH+VKDMHERKAMMAELSDGFVAMPGG+GTLEELFE+LTW Sbjct: 61 TGVIPQALMDKEVGHRELTHLHVVKDMHERKAMMAELSDGFVAMPGGIGTLEELFEILTW 120 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 +QLGFH KPI + NVDGFY+ LIAF+ + V+Q FV +Q+ LMMHE L+ R QTF Sbjct: 121 SQLGFHQKPIGVLNVDGFYDGLIAFLQNQVAQGFVKDNQASLMMHEITARALLIRLQTFV 180 Query: 181 PTYKTKWADREAVANLVP 198 P TK D A L+P Sbjct: 181 PQPSTKVLDALAAKTLLP 198 >ref|YP_001858256.1| hypothetical protein Bphy_2031 [Burkholderia phymatum STM815] gb|ACC71210.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 194 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 109/190 (57%), Positives = 141/190 (74%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 MKS+CVYCGSS GA P Y EAA+ + +V N++LVYGGG VGLMG+IA EVM GG A Sbjct: 1 MKSVCVYCGSSDGAKPLYREAAKAFGRALVAANLSLVYGGGKVGLMGVIADEVMAAGGRA 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 GVIP+ L++KE+GHDGL+ LH+V +MH RK MMA+LSD FVAMPGG GTLEELFEV TW Sbjct: 61 IGVIPELLVNKEVGHDGLSELHVVPNMHHRKKMMADLSDAFVAMPGGAGTLEELFEVFTW 120 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 AQLG+H K + + N+DGFY+ LI+ ++H V + F+ ++ ++DP LI R Q ++ Sbjct: 121 AQLGYHQKAVAVLNIDGFYDPLISMLEHTVQEGFMRQAYFDILQVDSDPAALIGRLQRYQ 180 Query: 181 PTYKTKWADR 190 P + KWADR Sbjct: 181 PPLQDKWADR 190