BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4068.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776668.1| translation factor SUA5 [Herbaspirillum sero... 399 e-109 ref|YP_004752329.1| hypothetical protein CFU_1674 [Collimonas fu... 343 6e-93 ref|YP_001352969.1| translation factor (SUA5) [Janthinobacterium... 333 7e-90 ref|YP_001100438.1| hypothetical protein HEAR2179 [Herminiimonas... 323 1e-86 ref|ZP_08273785.1| hypothetical protein IMCC9480_2045 [Oxalobact... 318 4e-85 >ref|YP_003776668.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1] gb|ADJ64760.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 205/211 (97%), Positives = 209/211 (99%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD Sbjct: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 Query: 61 DKHHLTLLCRDLSEIALYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 +KHHLTLLCRDLSEIA YAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG Sbjct: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEDLPLTSAEDIRSHLEKQIELVIDSGACSLE 180 LRVPENRIAHMLLEELGQPLLGTTLILPD+DLPLTSAEDIRSHLEKQI+LVIDSGACSLE Sbjct: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDDDLPLTSAEDIRSHLEKQIDLVIDSGACSLE 180 Query: 181 PTTVIDLTDDNEPVLVRQGRGDAGIFGLQAA 211 PTTVIDLTDD +PVLVRQGRGDAGIFGLQAA Sbjct: 181 PTTVIDLTDDEQPVLVRQGRGDAGIFGLQAA 211 >ref|YP_004752329.1| hypothetical protein CFU_1674 [Collimonas fungivorans Ter331] gb|AEK61506.1| hypothetical protein CFU_1674 [Collimonas fungivorans Ter331] Length = 207 Score = 343 bits (881), Expect = 6e-93, Method: Composition-based stats. Identities = 173/208 (83%), Positives = 191/208 (91%), Gaps = 1/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF+IHPDNPQLRLIKQA QII GG+VALPTD CYALVCQLDNKDAVERVRRIRGVD Sbjct: 1 MSQFFQIHPDNPQLRLIKQAVQIIQSGGIVALPTDCCYALVCQLDNKDAVERVRRIRGVD 60 Query: 61 DKHHLTLLCRDLSEIALYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 DKHHLT+LCRDLSEI+LYAKVDNRQ+RLLK+ATPGAYTFILEATKEVPRRLSHP+RKTIG Sbjct: 61 DKHHLTMLCRDLSEISLYAKVDNRQFRLLKSATPGAYTFILEATKEVPRRLSHPARKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEDLPLTSAEDIRSHLEKQIELVIDSGACSLE 180 LRVP++ I + +LEELGQPL+GTTLILP E+ LT +++RS LEKQIELVID GACSLE Sbjct: 121 LRVPQHSIVNAVLEELGQPLIGTTLILPGEEQALTDPDEVRSQLEKQIELVIDGGACSLE 180 Query: 181 PTTVIDLTDDNEPVLVRQGRGDAGIFGL 208 PTTVIDLT D EP L+RQGRGDAG+FGL Sbjct: 181 PTTVIDLTSD-EPELIRQGRGDAGLFGL 207 >ref|YP_001352969.1| translation factor (SUA5) [Janthinobacterium sp. Marseille] gb|ABR89821.1| translation factor (SUA5) [Janthinobacterium sp. Marseille] Length = 207 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 171/208 (82%), Positives = 182/208 (87%), Gaps = 1/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF+IHPDNPQ RLI QA QI+ GG+VALPTDSCYALVC LD+KDAV R+RRIR VD Sbjct: 1 MSQFFQIHPDNPQARLISQAVQIVRDGGIVALPTDSCYALVCHLDDKDAVARLRRIRNVD 60 Query: 61 DKHHLTLLCRDLSEIALYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 DKHHLTLLCRDLSEIALYAKVDN+QYR+LKAATPGAYTFILEATKEVPRRLSHPSRKTIG Sbjct: 61 DKHHLTLLCRDLSEIALYAKVDNQQYRMLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEDLPLTSAEDIRSHLEKQIELVIDSGACSLE 180 LRVPENRI H LLEEL QPLLGTTLILP ED PLT ED+R L K ++LVID GACS E Sbjct: 121 LRVPENRIVHALLEELAQPLLGTTLILPGEDEPLTDPEDVRDRLNKVVDLVIDGGACSFE 180 Query: 181 PTTVIDLTDDNEPVLVRQGRGDAGIFGL 208 PTTVIDLT EPVL RQGRGDA +FGL Sbjct: 181 PTTVIDLT-SGEPVLQRQGRGDATLFGL 207 >ref|YP_001100438.1| hypothetical protein HEAR2179 [Herminiimonas arsenicoxydans] emb|CAL62315.1| Conserved hypothetical protein, putative translation factor [Herminiimonas arsenicoxydans] Length = 207 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 166/208 (79%), Positives = 180/208 (86%), Gaps = 1/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF+IHP+NPQ RLI QA ++I GG+VALPTDSCYALVCQLD+KDAV R+RRIR VD Sbjct: 1 MSQFFQIHPENPQARLISQAVEVIKGGGIVALPTDSCYALVCQLDDKDAVARLRRIRNVD 60 Query: 61 DKHHLTLLCRDLSEIALYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 DKHHLTLLCRDLSEIA YAK+DN+QYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG Sbjct: 61 DKHHLTLLCRDLSEIAQYAKIDNQQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEDLPLTSAEDIRSHLEKQIELVIDSGACSLE 180 LRVPENRI H +LEEL QPLLGTTLILP ED PLT +D+R L K ++LVID GACS Sbjct: 121 LRVPENRIVHAVLEELAQPLLGTTLILPGEDEPLTDPDDVRDRLSKVVDLVIDGGACSFI 180 Query: 181 PTTVIDLTDDNEPVLVRQGRGDAGIFGL 208 PTTVIDLT EPVL RQGRGDA FGL Sbjct: 181 PTTVIDLTGP-EPVLQRQGRGDAAPFGL 207 >ref|ZP_08273785.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32734.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 159/208 (76%), Positives = 184/208 (88%), Gaps = 1/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF+IH DNPQ RLI QAA+IIH+GG+VA+PTDS YALVC LD+KDAV R+RR+RGVD Sbjct: 1 MSQFFQIHADNPQQRLINQAAEIIHRGGIVAMPTDSSYALVCHLDDKDAVTRLRRLRGVD 60 Query: 61 DKHHLTLLCRDLSEIALYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120 DKH LTLLCRDL+EIALYAKVDN+QYRLLKAATPG+YT ILEATKEVPRR+SHPSRKTIG Sbjct: 61 DKHLLTLLCRDLAEIALYAKVDNKQYRLLKAATPGSYTMILEATKEVPRRISHPSRKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEDLPLTSAEDIRSHLEKQIELVIDSGACSLE 180 LRVPEN+IA LLE+LGQPLLGTTLILP ++ PLT AE +R +EKQ++L+ID GACSLE Sbjct: 121 LRVPENKIALALLEQLGQPLLGTTLILPGDEHPLTDAESVRERIEKQVDLIIDGGACSLE 180 Query: 181 PTTVIDLTDDNEPVLVRQGRGDAGIFGL 208 PTTV+DL+ D EPVL+R GRG +FG Sbjct: 181 PTTVVDLSGD-EPVLIRAGRGPLALFGF 207