BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4054.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001894801.1| hypothetical protein Bphyt_1161 [Burkholderi...    54   8e-06
ref|YP_002912515.1| beta-hexosaminidase [Burkholderia glumae BGR...    54   8e-06

>ref|YP_001894801.1| hypothetical protein Bphyt_1161 [Burkholderia phytofirmans PsJN]
 gb|ACD15577.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 115

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 11 PTSASSLSVYSDIERYDPTAPRDFRPFVIGEFVIRRLPLRGTLYTDYYILHQGAVIGHQV 70
          PT   ++ + S    YDP APR   P ++GE+V+ R PL  +++T Y IL    V+   +
Sbjct: 12 PTRRDTIGLRSTFH-YDPMAPRPTTPVMVGEYVVARRPLADSVHTLYMILDGTEVVSTSI 70

Query: 71 SFPSEEDCRMHQRRQANWRGDT 92
          S+P+E+DC    +R    R ++
Sbjct: 71 SYPNEDDCATAIKRNLRKRAES 92


>ref|YP_002912515.1| beta-hexosaminidase [Burkholderia glumae BGR1]
 gb|ACR29811.1| beta-hexosaminidase [Burkholderia glumae BGR1]
          Length = 122

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 23  IERYDPTAPRDFRPFVIGEFVIRRLPLRGTLYTDYYILHQGAVIGHQVSFPSEEDCRMHQ 82
           + RYD  A R   P +IG++V+ R P+  +L+T Y IL +G + G Q+S PSE+DC    
Sbjct: 27  VVRYDRNAARPSTPILIGKYVVARRPIPDSLHTLYLILDEGDIAGTQISIPSEDDCAQAV 86

Query: 83  RRQANWRGDTAQRA 96
           +R  + +   A+ A
Sbjct: 87  KRLRDKKRAAAKTA 100