BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4051.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003279044.1| hypothetical protein CtCNB1_3002 [Comamonas ...    79   2e-13

>ref|YP_003279044.1| hypothetical protein CtCNB1_3002 [Comamonas testosteroni CNB-2]
 gb|ACY33748.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
          Length = 85

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 6/87 (6%)

Query: 4  TITLEFDVDGLNGYTDEYLAALWQAAQAQNKPFGDKEACETAEKIGREIIRRFLANTSPA 63
          +IT + D D L    D YLA LW  AQA    FGD  AC+ AE++GREI+RR+LA T P 
Sbjct: 5  SITFQIDADKLPSINDSYLAQLWHIAQANPAEFGDVTACDFAERVGREIVRRWLAATPPE 64

Query: 64 LWHFQGQHINFARQVVAHAPSDAQKAG 90
          LWH QG+H       V+ A S  Q  G
Sbjct: 65 LWHHQGRH------AVSRATSSTQTEG 85