BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4049.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002537435.1| conserved hypothetical protein [Ricinus comm... 137 1e-30 ref|YP_001063360.1| peptidase [Burkholderia pseudomallei 668] >g... 120 2e-25 ref|YP_004236919.1| peptidase S24/S26A/S26B, conserved region [A... 106 4e-21 ref|YP_972860.1| putative phage repressor [Acidovorax citrulli A... 105 6e-21 ref|ZP_02494567.1| helix-turn-helix motif:Peptidase S24, S26A an... 105 7e-21 >ref|XP_002537435.1| conserved hypothetical protein [Ricinus communis] gb|EEF24949.1| conserved hypothetical protein [Ricinus communis] Length = 295 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 9/240 (3%) Query: 9 YTRTYIDSMSNIASRLDEAMTAAGFESQS---ALSRASGVPQPTINRILKNVGKGQPEVG 65 Y T+I MSN +S + + + + ++ L RA+GVPQPTI+RIL K P Sbjct: 2 YALTHIRRMSNTSSIVAKNIQWLMDQRKTNPYELQRATGVPQPTIHRILTGESK-DPRTK 60 Query: 66 TVRRLATACNVSFNWLNEGIGEMGRAQKVELRDPASI--IKDAAASKPSIVEIPLVKLHV 123 +++ LA V L E A +E P S I +A IP V+L + Sbjct: 61 SLQPLADHFGVPLADLRER-DLSAPADALEGLKPGSFMRITEAGQGDQRFTLIPKVRLRL 119 Query: 124 SAGITGFQAELDETEFGMPVAVTQRWVDANGLIMEKLIAVRVHGDSMEDTLSDGDTVIIN 183 +AGI+G+ E + + G A+ W++ +G KLI++ V G+SME TL +GD V++N Sbjct: 120 TAGISGYDVEPEPFD-GTTAALPTGWIERHGYDRSKLISIVVRGESMETTLYEGDLVVVN 178 Query: 184 TDSVSPKDNKIFAANFGGEAVVKRLVRDFGRWFLVSDNPDQKRYHREECTLETCLLIGEV 243 T D ++A N+ GE VVKRL RD G+W+L SDNPDQ+RY+R C ET +IG V Sbjct: 179 TADQKLIDGAVYAINYEGEPVVKRLTRDAGQWWLTSDNPDQRRYYRRTCD-ETTKIIGRV 237 >ref|YP_001063360.1| peptidase [Burkholderia pseudomallei 668] gb|ABN87079.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia pseudomallei 668] Length = 222 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 17 MSNIASRLDEAMTAAGFESQSALSRASGVPQPTINRILKNVGKGQPEVGTVRRLATACNV 76 M +A RL A+ A +QS L+R GV + ++ L + ++ +A+A +V Sbjct: 1 MKTLADRLRAALQEAQM-NQSELARRVGVTRGAVSFWLTSATTSLAGENLLK-VASALSV 58 Query: 77 SFNWLNEGIGEMGRAQKVELRDPASIIKDAAASKPSIVEIPLVKLHVSAGITGFQAELDE 136 S NWL G G M PA++ + + P I VK+ +SAGITG+ E E Sbjct: 59 SPNWLATGRGRM---------KPATLQEISLQENPEYPAIRRVKIKISAGITGYGIEPLE 109 Query: 137 TEFGMPVAVTQRWVDANGLIMEKLIAVRVHGDSMEDTLSDGDTVIINTDSVSPKDNKIFA 196 + P+ + W ++NG EKL+A++V G SME L DGD V++N+ SP+D FA Sbjct: 110 EDHA-PIVFHRSWYESNGYDPEKLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFA 168 Query: 197 ANFGGEAVVKRLVRDFGRWFLVSDNPDQKRYHREECTLETCLLIGEVVQAQ 247 +F GE V+KRL R G W SDN D KR +R+ +IG V+ Q Sbjct: 169 LSFDGEVVIKRLFRTEGHWVAASDNQD-KRIYRDRPLNGDTFIIGRVIHKQ 218 >ref|YP_004236919.1| peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48352.1| Peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] Length = 231 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 99 PASIIKDAAA----SKPSIVEIPLVKLHVSAGITGFQAELDETEFGMPVAVTQRWVDANG 154 PA I + + A + P + E+ V LH+ GI + DET+ P+ + W++ G Sbjct: 75 PAGIRETSVAYDFDAGPEMYELFPVSLHLRPGIADYAIWPDETDEDAPITFHRHWLERRG 134 Query: 155 LIMEKLIAVRVHGDSMEDTLSDGDTVIINTDSVSPKDNKIFAANFGGEAVVKRLVRDFGR 214 + + L+A+RV G ME ++ GD V++NT + +D ++FA N GE +++R+ RD GR Sbjct: 135 YMPQCLLAIRVRGCGMEPSIQAGDIVVVNTSDTTLRDGQVFAINGFGEVLLRRVQRDGGR 194 Query: 215 WFLVSDNPDQKRYHREECTLETCLLIGEVVQAQ 247 W+L DNPDQ RY R+ C+ IG +V Q Sbjct: 195 WWLSCDNPDQARYPRKAWAEPDCIPIGRLVFKQ 227 >ref|YP_972860.1| putative phage repressor [Acidovorax citrulli AAC00-1] gb|ABM35086.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 231 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 99 PASIIKDAAA----SKPSIVEIPLVKLHVSAGITGFQAELDETEFGMPVAVTQRWVDANG 154 PA + +AA + P + E+ V LH+ GI + DET+ P+ ++W++ G Sbjct: 75 PAGTRESSAAYDFDAGPEMYELFPVSLHLRPGIADYAIWPDETDEDAPITFHRQWLERRG 134 Query: 155 LIMEKLIAVRVHGDSMEDTLSDGDTVIINTDSVSPKDNKIFAANFGGEAVVKRLVRDFGR 214 I + L+A+RV G ME ++ GD V++NT + +D ++FA N GE +++R RD GR Sbjct: 135 YIPQCLLAIRVRGCGMEPSIQAGDIVVVNTSDTTLRDGQVFAINGFGEVLLRRAQRDDGR 194 Query: 215 WFLVSDNPDQKRYHREECTLETCLLIGEVVQAQ 247 W++ DNPDQ RY R+ C+ IG +V Q Sbjct: 195 WWISCDNPDQARYPRKAWAEPDCIPIGRLVFKQ 227 >ref|ZP_02494567.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia pseudomallei NCTC 13177] Length = 153 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 2/149 (1%) Query: 99 PASIIKDAAASKPSIVEIPLVKLHVSAGITGFQAELDETEFGMPVAVTQRWVDANGLIME 158 PA++ + + P I VK+ +SAGITG+ E E + P+ + W ++NG E Sbjct: 3 PATLQEISLQENPEYPAIRRVKIKISAGITGYGIEPLEEDHA-PIVFHRSWYESNGYDPE 61 Query: 159 KLIAVRVHGDSMEDTLSDGDTVIINTDSVSPKDNKIFAANFGGEAVVKRLVRDFGRWFLV 218 KL+A++V G SME L DGD V++N+ SP+D FA +F GE V+KRL R G W Sbjct: 62 KLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFALSFDGEVVIKRLFRTDGHWVAA 121 Query: 219 SDNPDQKRYHREECTLETCLLIGEVVQAQ 247 SDN D KR +R+ +IG V+ Q Sbjct: 122 SDNQD-KRIYRDRPLNGDTFIIGRVIHKQ 149