BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4046.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCA79319.1| conserved hypothetical protein [blood disease ba... 132 1e-29 emb|CCA79073.1| conserved hypothetical protein [blood disease ba... 126 1e-27 emb|CCA86100.1| conserved hypothetical protein [Ralstonia syzygi... 113 1e-23 ref|NP_519796.1| hypothetical protein RSc1675 [Ralstonia solanac... 112 3e-23 ref|YP_003746161.1| hypothetical protein RCFBP_20363 [Ralstonia ... 110 6e-23 >emb|CCA79319.1| conserved hypothetical protein [blood disease bacterium R229] Length = 169 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 73/165 (44%), Positives = 100/165 (60%), Gaps = 2/165 (1%) Query: 6 HRHLEMNQHDALYRIARAYPGGIEALAARMGKSPNTLRNKLRPEITTHAMSFEEVSEVLE 65 H++ ++NQHD LY +ARAYPGGIEALA RMG + LRNKLRP + TH MSFE+VS +LE Sbjct: 3 HQYSDINQHDVLYSVARAYPGGIEALAPRMGMTAPVLRNKLRPGVDTHYMSFEQVSLLLE 62 Query: 66 FCEGAKVKDALQPLRAFNARHGMAAFRMPEVDN--QDDEQLLGTVYRVMKEIGQVAETVS 123 E A V +A P+RAF RHGM A M + Q D L V+ E+G +++ Sbjct: 63 LVEEANVANAKLPIRAFCWRHGMVALDMARIKGVPQTDADLNRAYGNVLNELGDISKKFG 122 Query: 124 VALEDGRITAQELDLIEKNFAQGMSALGEWRERVRQRAERDGALQ 168 AL DG ++ E+D +E F Q + A +RE + +R D ++ Sbjct: 123 EALVDGHVSHTEMDALELEFEQLVGAAMHFREMLLERTAHDSGVR 167 >emb|CCA79073.1| conserved hypothetical protein [blood disease bacterium R229] Length = 170 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 71/161 (44%), Positives = 101/161 (62%), Gaps = 2/161 (1%) Query: 6 HRHLEMNQHDALYRIARAYPGGIEALAARMGKSPNTLRNKLRPEITTHAMSFEEVSEVLE 65 H++ ++NQHD LY +ARAYPGGIEALA RMG + LRNKLRP I TH MSFE+VS +LE Sbjct: 3 HQYSDINQHDVLYSVARAYPGGIEALAPRMGVTAPVLRNKLRPGIDTHYMSFEQVSLLLE 62 Query: 66 FCEGAKVKDALQPLRAFNARHGMAAFRMPEVDNQ--DDEQLLGTVYRVMKEIGQVAETVS 123 + A+V +A P+RAF RHGM A + + + D L V+ E+G +++ Sbjct: 63 LVDEARVPNAKLPIRAFCWRHGMVALDVTRIKAEPTGDTDLNRAYGNVLNELGDISKKFG 122 Query: 124 VALEDGRITAQELDLIEKNFAQGMSALGEWRERVRQRAERD 164 AL DG ++ E++ +E F Q ++A +RE + +RA D Sbjct: 123 EALADGHVSHAEVESLELEFEQLVAAAMSFREMLHERATVD 163 >emb|CCA86100.1| conserved hypothetical protein [Ralstonia syzygii R24] Length = 171 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 98/174 (56%), Gaps = 10/174 (5%) Query: 4 VTHRHLEMNQHDALYRIARAYPGGIEALAARMGK------SPNTLRNKLRPEITTHAMSF 57 +T+ + +++ H+ALY +AR Y GGIE LAA + S N LRNKLRP I +H ++ Sbjct: 1 MTYIYSDVSSHEALYNLARKYLGGIEGLAAALSSRLARRISSNVLRNKLRPGIESHHVTL 60 Query: 58 EEVSEVLEFCEGAKVKDALQPLRAFNARHGMAAFRMPEVDNQDDEQLLGTVYRVMKEIGQ 117 E+ S +LE CE A+V A PL A RH +PEVD DD TV +VM IG Sbjct: 61 EDFSLILELCEEARVPGAHVPLEALCWRHSRVPVELPEVDG-DDPNPARTVCQVMARIGD 119 Query: 118 VAETVSVALEDGRITAQELDLIEKNFAQGMSALGEWRERVRQRAERDGALQAQK 171 +A TV+ A ED IT EL+ IE F + AL W +R +A GA Q +K Sbjct: 120 LAATVAKAAEDNVITEAELEGIEGEFLKAQVALATWHAEIRAQA---GASQRRK 170 >ref|NP_519796.1| hypothetical protein RSc1675 [Ralstonia solanacearum GMI1000] emb|CAD15377.1| hypothetical protein RSc1675 [Ralstonia solanacearum GMI1000] emb|CCA79926.1| conserved hypothetical protein [blood disease bacterium R229] Length = 167 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 90/158 (56%), Gaps = 7/158 (4%) Query: 10 EMNQHDALYRIARAYPGGIEALAARMGKSP------NTLRNKLRPEITTHAMSFEEVSEV 63 E++QH+ALY +A YPGG+ LA + + N LRNKLRP I +H ++ EE S + Sbjct: 3 EVDQHEALYGLATRYPGGLAGLAHALSQRTCKRVYLNVLRNKLRPGIDSHHITLEEFSMI 62 Query: 64 LEFCEGAKVKDALQPLRAFNARHGMAAFRMPEVDNQDDEQLLGTVYRVMKEIGQVAETVS 123 LE CE A+V A PL A RHG +PE D +D TV RVM ++G +A TV+ Sbjct: 63 LELCEEARVPGAHAPLDALCWRHGRVPVELPEAD-ANDPNPAHTVCRVMAKVGDLAATVA 121 Query: 124 VALEDGRITAQELDLIEKNFAQGMSALGEWRERVRQRA 161 A ED IT EL++IE F + +L W +R +A Sbjct: 122 RAAEDNVITEAELEVIEGEFLKAYVSLATWHAEIRSQA 159 >ref|YP_003746161.1| hypothetical protein RCFBP_20363 [Ralstonia solanacearum CFBP2957] emb|CBJ43554.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 167 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 91/158 (57%), Gaps = 7/158 (4%) Query: 10 EMNQHDALYRIARAYPGGIE----ALAARMGKSP--NTLRNKLRPEITTHAMSFEEVSEV 63 E++QH+ALY +A YPGG+ AL+ R GK N LRNKLRP I +H ++ EE S + Sbjct: 3 EVDQHEALYGLATRYPGGLAGLAYALSQRTGKRVYLNVLRNKLRPGIDSHHITLEEFSMI 62 Query: 64 LEFCEGAKVKDALQPLRAFNARHGMAAFRMPEVDNQDDEQLLGTVYRVMKEIGQVAETVS 123 LE CE A+V A PL A RHG +PE D +D TV RVM ++G +A TV+ Sbjct: 63 LELCEEARVPGAHAPLDAVCWRHGRVPVELPEAD-ANDPNPSHTVCRVMAKVGDLAATVA 121 Query: 124 VALEDGRITAQELDLIEKNFAQGMSALGEWRERVRQRA 161 A ED IT EL+ IE F + +L W +R +A Sbjct: 122 KAAEDNVITEAELEAIEGEFLKAYVSLATWHAEIRTQA 159