BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4042.p (171 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCA79312.1| putative phage terminase, small subunit [blood d... 185 2e-45 ref|YP_969976.1| P27 family phage terminase small subunit [Acido... 130 7e-29 ref|YP_004695583.1| phage terminase, small subunit P27 family [N... 124 5e-27 ref|ZP_06841923.1| phage terminase, small subunit, , P27 family ... 94 7e-18 ref|ZP_03168549.1| hypothetical protein RUMLAC_02232 [Ruminococc... 87 1e-15 >emb|CCA79312.1| putative phage terminase, small subunit [blood disease bacterium R229] Length = 175 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 97/171 (56%), Positives = 125/171 (73%), Gaps = 2/171 (1%) Query: 1 MAGNSNSGRKPMPAALHLIGGNRSKKSAAELAGAGRPVVAPAAPPECPAFLSEDAREEWN 60 MAGN NSGRK +PA +H+I GNRSKK +E+ AG PECPA L + ARE W+ Sbjct: 2 MAGNGNSGRKSLPAVVHMIQGNRSKKPLSEIVQAGVKWELVKDAPECPAVLDDAAREIWD 61 Query: 61 RIVADLLVMGLLSRVDRAELAVYCQAWGDWKRAREKITELG-EQGFSEMTPSGYKQMSVW 119 + DL ++GL++++D+ ELAVYCQA+ DWK AR KI + G+ ++TPSGYKQ+SVW Sbjct: 62 ELAPDLYMLGLINKLDQGELAVYCQAYADWKHARAKINAAKRDAGYVDITPSGYKQISVW 121 Query: 120 MQISNRAEDRMRTAGASFGLNPSARMRLNV-NAPQGELFPNEPKETANKFF 169 MQI+NRAE+RMR AGASFGLNPSAR R+ + + QGELF + KE ANK+F Sbjct: 122 MQIANRAEERMRAAGASFGLNPSARARVQLPHGGQGELFGGDEKEKANKYF 172 >ref|YP_969976.1| P27 family phage terminase small subunit [Acidovorax citrulli AAC00-1] gb|ABM32202.1| phage terminase, small subunit, putative, P27 family [Acidovorax citrulli AAC00-1] Length = 178 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 7/177 (3%) Query: 1 MAGNSNSGRKPMPAALHLIGGNRSKKSAAELAGAGRPVVAPAAPPECPAFLSEDAREEWN 60 MAGNSNSGR +P +H + GNRSK+S A+LA + A PE P +L+ A EW+ Sbjct: 1 MAGNSNSGRPALPPFMHQMQGNRSKQSQAQLAETNEALQIAACAPEPPDWLNAAALAEWH 60 Query: 61 RIVADLLVMGLLSRVDRAELAVYCQAWGDWKRAREKITE----LGEQGFSEMTPSGYKQM 116 R+V DLL +G + R+DR +LA YC+A DW+ R +I E + G + +G KQ+ Sbjct: 61 RVVPDLLTLGWVHRLDRMQLAAYCEAVADWETFRRRIAEENRRQADAGDVQTFATGAKQI 120 Query: 117 SVWMQISNRAEDRMRTAGASFGLNPSARMRLNVNA---PQGELFPNEPKETANKFFS 170 S+W Q++N AE R AGA FG P AR + + Q ELFPN+ KE A ++FS Sbjct: 121 SIWRQLANDAEKRANAAGAGFGFTPLARRNMKAASALPSQPELFPNDHKEAAARYFS 177 >ref|YP_004695583.1| phage terminase, small subunit P27 family [Nitrosomonas sp. Is79A3] gb|AEJ02184.1| phage terminase, small subunit, , P27 family [Nitrosomonas sp. Is79A3] Length = 172 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 102/169 (60%), Gaps = 13/169 (7%) Query: 8 GRKPMPAALHLIGGNRSKKSAAELAGAGRPVVAPAAPPECPAFLSEDAREEWNRIVADLL 67 G KP+P +H + GN SKK E G PVV P CPA L+++AR+E+ RI A+L Sbjct: 5 GPKPLPDNVHALRGNPSKKPLGEFLGGVNPVVEI---PSCPAHLNDEARKEYKRITAELK 61 Query: 68 VMGLLSRVDRAELAVYCQAWGDWKRAREKITEL------GEQGFSEMTPSGYKQMSVWMQ 121 ++GL+S++DRA ++ YC AWG+ +KI EL GE G +TP+GY+QMSVW+Q Sbjct: 62 ILGLISKIDRAAISAYCSAWGEVVCCEKKIAELNAKDPKGEAGLVGLTPNGYQQMSVWVQ 121 Query: 122 ISNRAEDRMRTAGASFGLNPSARMRLNVNAPQGEL----FPNEPKETAN 166 I NRA +RM + FG++PS+R + + Q L P+ PK N Sbjct: 122 IRNRAYERMMRFASEFGMSPSSRTKATPSENQQSLPGFEKPDAPKTGWN 170 >ref|ZP_06841923.1| phage terminase, small subunit, , P27 family [Burkholderia sp. Ch1-1] gb|EFG70448.1| phage terminase, small subunit, , P27 family [Burkholderia sp. Ch1-1] Length = 182 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 14/175 (8%) Query: 1 MAGNSNSGRKPMPAALHLIGGNRSKKSAAELAGAGRPVVAPAAPPECPAFLSEDAREEWN 60 +A G +P PAAL LI GN K+ L+ P VA P+ P L+++AR+EW Sbjct: 6 LAHMGQRGPQPAPAALKLIRGNPGKRPI-NLSDGVNPEVAI---PDAPRHLNKEARKEWK 61 Query: 61 RIVADLLVMGLLSRVDRAELAVYCQAWG---DWKRAREKITEL-------GEQGFSEMTP 110 R+ A+L +GL+SR+DRA LA+YCQAWG + + A +K +L + F ++ P Sbjct: 62 RVSAELEQLGLISRLDRAALALYCQAWGRLVELETAFQKRQDLLAAEGKTASEAFVDVAP 121 Query: 111 SGYKQMSVWMQISNRAEDRMRTAGASFGLNPSARMRLNVNAPQGELFPNEPKETA 165 SGY+Q +V + + N +D++ SFGL+P++R R+ + Q L EP + Sbjct: 122 SGYRQQAVEVSLINSLQDQVHKFLQSFGLSPASRSRVTASTNQLALPGLEPASSG 176 >ref|ZP_03168549.1| hypothetical protein RUMLAC_02232 [Ruminococcus lactaris ATCC 29176] gb|EDY32069.1| hypothetical protein RUMLAC_02232 [Ruminococcus lactaris ATCC 29176] Length = 168 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 7 SGRKPMPAALHLIGGNRSKKSAAELAGAGRPVVAPAAPPECPAFLSEDAREEWNRIVADL 66 +GRKP P A+ + GN K+ PV A P CP +L +A++EW R+ + Sbjct: 11 AGRKPKPTAMKKLEGNPGKRKL----NTKEPVPAKGMPA-CPDWLMPEAKKEWERLAKLM 65 Query: 67 LVMGLLSRVDRAELAVYCQAWGDWKRAREKITELGEQGFSEMTPSGYKQMSVWMQISNRA 126 MG+L+ VD A A YCQ++ WK A+E IT G + T GY+Q + W+ I+N Sbjct: 66 NQMGVLTEVDMAAFAAYCQSYARWKEAQEHITSGGS---TFETDKGYQQQTPWVGIANTN 122 Query: 127 EDRMRTAGASFGLNPSARMRL 147 + M A + FGL PS+R R+ Sbjct: 123 QKLMLQAASEFGLTPSSRSRI 143