BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4041.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754015.1| phage terminase large subunit [Collimonas fu... 781 0.0 emb|CCA79311.1| putative phage terminase, large subunit [blood d... 686 0.0 ref|NP_746011.1| phage terminase, large subunit [Pseudomonas put... 612 e-173 ref|YP_747683.1| phage terminase [Nitrosomonas eutropha C91] >gi... 579 e-163 ref|YP_002150681.1| phage terminase, large subunit [Proteus mira... 560 e-157 >ref|YP_004754015.1| phage terminase large subunit [Collimonas fungivorans Ter331] gb|AEK63192.1| Phage terminase large subunit [Collimonas fungivorans Ter331] Length = 575 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 363/468 (77%), Positives = 407/468 (86%) Query: 13 TDRATAYARAVVKGTLVAGPDVRNACKRHLRDLKEGKKRGLRWDLEAANHAIAFFEEVLC 72 +DRAT YAR+V+ +VAGPD+R AC+RHL DL +G KRGL WDLEAA HAI FFE+VLC Sbjct: 11 SDRATEYARSVIAAQIVAGPDIRAACQRHLNDLAQGSKRGLCWDLEAAQHAIGFFEDVLC 70 Query: 73 LNGGVFEGSPFLLIGWQCFVVGSLFGWMGPDGLRRFRVAYIETAKGSGKSPLAAGVGLFG 132 LNGG FEG PF ++ WQ FV+G LFGW G DG RRFRVAY+ETAKGSGKSPLAAGVGLFG Sbjct: 71 LNGGQFEGKPFEVLPWQAFVIGCLFGWKGADGFRRFRVAYVETAKGSGKSPLAAGVGLFG 130 Query: 133 LTADREQRAEVYAAATKKEQAQILFRDAIAMYEQSPQLAARLVTSGSKGKEFNLAYHATS 192 LTAD E RAEVYAAATKK+QAQILFRDA+AMY+QSP LA RL SGSKGKE+NLAY+ TS Sbjct: 131 LTADNEPRAEVYAAATKKDQAQILFRDAVAMYDQSPALAKRLTVSGSKGKEWNLAYNKTS 190 Query: 193 SFFRTISADDGQSGPRPHMALIDEVHEHKSPLVIEMMRAGTKSRKQALIFMITNSGTDKR 252 SFFR ISADDGQSGPRPHMAL+DE+HEHK+ V+EMMRAGTKSR+QALIFMITNSGTDKR Sbjct: 191 SFFRPISADDGQSGPRPHMALLDEIHEHKNANVVEMMRAGTKSREQALIFMITNSGTDKR 250 Query: 253 SVCWSYHEYGCKVVAGTEENDSLFAFICSLDPGDDPFQDESCWEKANPSLSVGIPGLKYL 312 +VCW YH+YG KV AG ++DS FAFICSLD GDDPF+DE CW K NPSL GIPGLKYL Sbjct: 251 TVCWDYHDYGSKVCAGLLKDDSFFAFICSLDLGDDPFKDERCWYKVNPSLQNGIPGLKYL 310 Query: 313 REQVTDARGMPSKEAIVRRLNFCQWTEADSPWISADVWFACQDEEKLPLEAYYGRTGVAG 372 REQVT ARGMPSKEA+VRRLNFC+WTEA +PWIS +VWF C++ +PLE +YGR+G AG Sbjct: 311 REQVTQARGMPSKEALVRRLNFCEWTEASAPWISGEVWFNCEENPPIPLEHFYGRSGTAG 370 Query: 373 LDLSSTQDLTALVLALDPTPEDPVTRIIPYFWLPGDGLHMKAEKDRVPYLVWRDAGYLEA 432 LDLSSTQDLTA V+ALDPTPEDPVTR+IPYFWLPGDGLH KA+KDRVPYL WRDAG+LEA Sbjct: 371 LDLSSTQDLTAFVVALDPTPEDPVTRLIPYFWLPGDGLHDKADKDRVPYLAWRDAGHLEA 430 Query: 433 LPGRAVDRLAVLNRAAALTASFDLRAIHCDRWRLEDFQHLINREGVAL 480 LPGRAVD+LAVLNR AAL + FDLR I CDRWRLEDFQ L+ REGV+L Sbjct: 431 LPGRAVDKLAVLNRIAALASVFDLREIACDRWRLEDFQQLVEREGVSL 478 >emb|CCA79311.1| putative phage terminase, large subunit [blood disease bacterium R229] Length = 537 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 321/439 (73%), Positives = 372/439 (84%) Query: 42 LRDLKEGKKRGLRWDLEAANHAIAFFEEVLCLNGGVFEGSPFLLIGWQCFVVGSLFGWMG 101 +RDL+EG RGLRWDL+AANHAI FFE+VLCLNGG FEG PF ++ WQ FV+GSLFGW G Sbjct: 1 MRDLEEGPARGLRWDLDAANHAIGFFEDVLCLNGGEFEGKPFDVLPWQAFVIGSLFGWKG 60 Query: 102 PDGLRRFRVAYIETAKGSGKSPLAAGVGLFGLTADREQRAEVYAAATKKEQAQILFRDAI 161 DG RRFRV Y+ETAKGSGKSPLAAG+GL+GLTAD E RAE+YAAATKK+QAQILFRDAI Sbjct: 61 SDGYRRFRVGYVETAKGSGKSPLAAGIGLYGLTADGESRAEIYAAATKKDQAQILFRDAI 120 Query: 162 AMYEQSPQLAARLVTSGSKGKEFNLAYHATSSFFRTISADDGQSGPRPHMALIDEVHEHK 221 AM +QSP LA RL SG G+E+N+AY TSSFFR ISADDGQSGPRPH+AL+DE+HEH+ Sbjct: 121 AMVDQSPLLANRLEKSGGAGREYNIAYLNTSSFFRPISADDGQSGPRPHIALLDEIHEHR 180 Query: 222 SPLVIEMMRAGTKSRKQALIFMITNSGTDKRSVCWSYHEYGCKVVAGTEENDSLFAFICS 281 P V+EM+RAGTKSR+QALIFMITNSGTDKR+VCW YH+YG KV AG E+DS FAFICS Sbjct: 181 GPHVVEMVRAGTKSRRQALIFMITNSGTDKRTVCWDYHDYGAKVCAGQIEDDSFFAFICS 240 Query: 282 LDPGDDPFQDESCWEKANPSLSVGIPGLKYLREQVTDARGMPSKEAIVRRLNFCQWTEAD 341 LD GDDPF+DE+CW KANPSL GIPG KYLREQVT ARGMPSKE+ VRRL FCQWTEA+ Sbjct: 241 LDEGDDPFKDEACWPKANPSLEYGIPGYKYLREQVTQARGMPSKESTVRRLGFCQWTEAE 300 Query: 342 SPWISADVWFACQDEEKLPLEAYYGRTGVAGLDLSSTQDLTALVLALDPTPEDPVTRIIP 401 +PWIS +VW ACQ + LE YGR+GVAGLDLSSTQDLTALV+ALDPT +DP TR++P Sbjct: 301 APWISGEVWMACQAKPAPSLEQLYGRSGVAGLDLSSTQDLTALVVALDPTEDDPYTRLVP 360 Query: 402 YFWLPGDGLHMKAEKDRVPYLVWRDAGYLEALPGRAVDRLAVLNRAAALTASFDLRAIHC 461 +FWLPGDGLH KA++DRVPYL WRDAG+L ALPGRA+++LAVL R + + FDLR I Sbjct: 361 FFWLPGDGLHDKADRDRVPYLAWRDAGHLSALPGRAINKLAVLQRLVEVCSMFDLREIAY 420 Query: 462 DRWRLEDFQHLINREGVAL 480 DRWR+ED + LI +EG +L Sbjct: 421 DRWRIEDLKALIEQEGHSL 439 >ref|NP_746011.1| phage terminase, large subunit [Pseudomonas putida KT2440] gb|AAN69475.1|AE016582_13 phage terminase, large subunit, putative [Pseudomonas putida KT2440] Length = 602 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 301/482 (62%), Positives = 358/482 (74%), Gaps = 4/482 (0%) Query: 1 MSPRKPRT-SSSATDRATAYARAVVKGTLVAGPDVRNACKRHLRDLKEGKKRGLRWDLEA 59 MS +K + SSS D AT YA+ V G VAGPD+RNAC RHLRDL+EG KRGL WDL+A Sbjct: 1 MSQKKTSSRSSSVDDPATQYAKEVHSGERVAGPDIRNACARHLRDLEEGPKRGLTWDLDA 60 Query: 60 ANHAIAFFEEVLCLNGGVFEGSPFLLIGWQCFVVGSLFGWMGPDGLRRFRVAYIETAKGS 119 AN AI F+ VL LNGG FEG PF L+ WQ F+VGS+FGW DG RRFRV Y+E+ KGS Sbjct: 61 ANKAIRFYRTVLKLNGGEFEGLPFELLPWQKFIVGSIFGWKSSDGYRRFRVVYVESGKGS 120 Query: 120 GKSPLAAGVGLFGLTADREQRAEVYAAATKKEQAQILFRDAIAMYEQSPQLAARLVTSGS 179 GKSPLAAGVGL GL AD E RAE+YAAATKK+QA ILFRDA+AM +QSP+L RLV SG+ Sbjct: 121 GKSPLAAGVGLTGLIADNEARAEIYAAATKKDQAMILFRDAVAMVQQSPELTKRLVCSGT 180 Query: 180 KGKEFNLAYHATSSFFRTISADDGQSGPRPHMALIDEVHEHKSPLVIEMMRAGTKSRKQA 239 +NLAY + SFFR IS+DDGQSGPRPHMALIDEVHEHK+ +V+EMMRAGTKSRKQA Sbjct: 181 GQNIWNLAYLKSGSFFRPISSDDGQSGPRPHMALIDEVHEHKTNMVVEMMRAGTKSRKQA 240 Query: 240 LIFMITNSGTDKRSVCWSYHEYGCKVVAGTEENDSLFAFICSLDPGDDPFQDESCWEKAN 299 LIFMITNSG++KR CW YHEYG +V +G +D FA+ICSLD GDDP QDESCW K+N Sbjct: 241 LIFMITNSGSNKRGPCWEYHEYGSRVASGALTDDGFFAYICSLDEGDDPIQDESCWFKSN 300 Query: 300 PSLS-VGIPGLKYLREQVTDARGMPSKEAIVRRLNFCQWTEADSPWISADVWFACQDEEK 358 PSL +PG+KYLREQVT+ARGMPSKEA+VRRLNFC+WT A+SPWIS DVW Q EE+ Sbjct: 301 PSLQDADLPGMKYLREQVTEARGMPSKEAMVRRLNFCEWTGAESPWISWDVW--SQAEER 358 Query: 359 LPLEAYYGRTGVAGLDLSSTQDLTALVLALDPTPEDPVTRIIPYFWLPGDGLHMKAEKDR 418 +P+ R V GLDLSST DLT+ VL PT EDP R++PYFW+P L + +D+ Sbjct: 359 VPMSLLRNRPSVGGLDLSSTTDLTSFVLLFYPTYEDPHWRLLPYFWIPDHELDKREARDK 418 Query: 419 VPYLVWRDAGYLEALPGRAVDRLAVLNRAAALTASFDLRAIHCDRWRLEDFQHLINREGV 478 VPY W + LE PGRA+ +L VL R + F + I DRWR+ED + L++ + Sbjct: 419 VPYAAWIKSRDLETTPGRAISKLHVLRRLQTICDFFQVDKIAFDRWRIEDMRQLMSEYDI 478 Query: 479 AL 480 L Sbjct: 479 TL 480 >ref|YP_747683.1| phage terminase [Nitrosomonas eutropha C91] gb|ABI59718.1| phage Terminase [Nitrosomonas eutropha C91] Length = 557 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 285/466 (61%), Positives = 343/466 (73%), Gaps = 6/466 (1%) Query: 17 TAYARAVVKGTLVAGPDVRNACKRHLRDLKEGKKRGLRWDLEAANHAIAFFEEVLCLNGG 76 T YAR VV G +VAGP VR AC RHL DL++ RG +DLE I F +VL LNGG Sbjct: 2 TTYARKVVAGKIVAGPHVRAACNRHLEDLEQAPSRGFFFDLEKVKRIIGFCRDVLKLNGG 61 Query: 77 VFEGSPFLLIGWQCFVVGSLFGWMGPDGLRRFRVAYIETAKGSGKSPLAAGVGLFGLTAD 136 +EG P++L+ WQ F+VGSLFGW+ +GLRRFRVAY+ T KGSGKSPLAA VGL+GL AD Sbjct: 62 EYEGKPYILLDWQAFIVGSLFGWVDVEGLRRFRVAYVSTGKGSGKSPLAAAVGLYGLVAD 121 Query: 137 REQRAEVYAAATKKEQAQILFRDAIAMYEQSPQLAARLVTSGSKGKEFNLAYHATSSFFR 196 E RAE Y+AATKK+QA ILFRDA+AM +QS L L+ SG +NLAYH + SFFR Sbjct: 122 GEARAECYSAATKKDQAMILFRDAVAMVDQSAILRDALIKSGKGSTVWNLAYHKSGSFFR 181 Query: 197 TISADDGQSGPRPHMALIDEVHEHKSPLVIEMMRAGTKSRKQALIFMITNSGTDKRSVCW 256 IS+DDGQSGPRPH+ALIDE+HEHK+ V+EMMRAGTKSR+QALIFMITNSG+DK CW Sbjct: 182 PISSDDGQSGPRPHIALIDEIHEHKNNFVVEMMRAGTKSRRQALIFMITNSGSDKTGPCW 241 Query: 257 SYHEYGCKVVAGTEENDSLFAFICSLDPGDDPFQDESCWEKANPSLSVGIPGLKYLREQV 316 YH YG +V +G +DS F++IC+LD GDDP DESCW+KANPSL G+PG +Y+REQV Sbjct: 242 DYHTYGTQVASGQLTDDSFFSYICALDEGDDPINDESCWDKANPSLRFGLPGYRYIREQV 301 Query: 317 TDARGMPSKEAIVRRLNFCQWTEADSPWISADVWF-ACQDEEKLPLEAYYGRTGVAGLDL 375 +A+GMPSKEA+VRRLNFC+WT AD+PWISADVW A +D + L + R GLDL Sbjct: 302 REAKGMPSKEAVVRRLNFCEWTGADAPWISADVWMDARRDYDWRNLRS---RRAWGGLDL 358 Query: 376 SSTQDLTALVLALDP-TPEDPVTRIIPYFWLPGDGLHMKAEKDRVPYLVWRDAGYLEALP 434 ST DLT LVL L+P T EDP +++ + WLP L K E DRVPYL W+ AGYLE P Sbjct: 359 GSTTDLTGLVLWLEPETAEDP-WQLVTFAWLPEQDLLRKEEVDRVPYLAWKSAGYLETTP 417 Query: 435 GRAVDRLAVLNRAAALTASFDLRAIHCDRWRLEDFQHLINREGVAL 480 GRAV RLAVL R A L FD++ I DRWR+ED + + EG+AL Sbjct: 418 GRAVSRLAVLRRLAELQNMFDIQCIAFDRWRIEDLKQMAEDEGIAL 463 >ref|YP_002150681.1| phage terminase, large subunit [Proteus mirabilis HI4320] emb|CAR42063.1| putative phage terminase, large subunit [Proteus mirabilis HI4320] Length = 577 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 272/477 (57%), Positives = 340/477 (71%), Gaps = 8/477 (1%) Query: 4 RKPRTSSSATDRATAYARAVVKGTLVAGPDVRNACKRHLRDLKEGKKRGLRWDLEAANHA 63 RK R+++ + D AT YA+ V +G ++AGPD+R+AC RHL+DL E ++RGL WD+EA Sbjct: 6 RKIRSTNISVDPATQYAQDVHQGKILAGPDIRHACARHLKDLNEAEQRGLVWDVEAVKRV 65 Query: 64 IAFFEEVLCLNGGVFEGSPFLLIGWQCFVVGSLFGWMGPDGLRRFRVAYIETAKGSGKSP 123 I FF +VL LNGG EG PF+L+ WQCFV+GS+FGW DG RRFR+ Y+E+ KGSGKSP Sbjct: 66 IDFFAKVLKLNGGEHEGKPFILLPWQCFVIGSIFGWKMTDGTRRFRIVYVESGKGSGKSP 125 Query: 124 LAAGVGLFGLTADREQRAEVYAAATKKEQAQILFRDAIAMYEQSPQLAARLVTSGSKGKE 183 +A GVGL+ L AD E RAEVYAAATKK+QA +LFRDA+AM +QSP L+ R+ SG GKE Sbjct: 126 MAGGVGLYCLVADSEPRAEVYAAATKKDQAMVLFRDAVAMVDQSPALSQRITKSGGTGKE 185 Query: 184 FNLAYHATSSFFRTISADDGQSGPRPHMALIDEVHEHKSPLVIEMMRAGTKSRKQALIFM 243 +NLAY TSSFFR IS+DDGQSGPRPH ALIDE+HEHK+ +EMMRAGTK R+QALIFM Sbjct: 186 WNLAYLKTSSFFRPISSDDGQSGPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFM 245 Query: 244 ITNSGTDKRSVCWSYHEYGCKVVAGTEENDSLFAFICSLDPGDDPFQDESCWEKANPSLS 303 ITNSG DK SVC+ YHEYG KV GT E+DS F++ICSLD GDDPF+DESCW KANPSL Sbjct: 246 ITNSGHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLG 305 Query: 304 VGIPGLKYLREQVTDARGMPSKEAIVRRLNFCQWTEADSPWISADVWFACQDEEKLPLEA 363 +YLREQVT ARGMP+KE+IVRRLNFCQW +AD+PWI+++ W C E + Sbjct: 306 YTFSD-RYLREQVTQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQC--ENTFTFDD 362 Query: 364 YYGRTGVAGLDLSSTQDLTALVLALDPTPEDPVTRIIPYFWLPGDGLHMKAEKDRVPYLV 423 G GLDLS T+DLTAL L P+ + R+ FW P D L +A+ DRVPY + Sbjct: 363 LQGEECYGGLDLSGTKDLTALALYF-PS----LKRLYVEFWTPKDTLLDRAKTDRVPYDL 417 Query: 424 WRDAGYLEALPGRAVDRLAVLNRAAALTASFDLRAIHCDRWRLEDFQHLINREGVAL 480 W G++ PG AV V R A + +RAI D +R++ + ++ GV + Sbjct: 418 WVRQGFMHTTPGNAVRYEFVAERIAEMAMHVSMRAIAFDPYRIKYLEPKLDDAGVTV 474