BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4040.p         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004754015.1| phage terminase large subunit [Collimonas fu...   133   7e-30
emb|CCA79311.1| putative phage terminase, large subunit [blood d...   103   1e-20
ref|NP_037663.1| terminase large subunit [Enterobacteria phage H...    94   6e-18
gb|ADZ13585.1| terminase large subunit [Cronobacter phage ENT39118]    94   6e-18
ref|NP_037698.1| terminase large subunit [Enterobacteria phage H...    94   8e-18

>ref|YP_004754015.1| phage terminase large subunit [Collimonas fungivorans Ter331]
 gb|AEK63192.1| Phage terminase large subunit [Collimonas fungivorans Ter331]
          Length = 575

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/86 (73%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 1   MAPAIDEFERMLLDQRLRHDGNPVMTWCAANAVLLTDPAGNRKIAKERATGRVDGMVAAV 60
           MAPA+DEFERMLLD+R++H+GNPVMTWCAAN VL+TDPAGNRKI KERATGRVDG+VA V
Sbjct: 491 MAPAVDEFERMLLDRRMKHNGNPVMTWCAANVVLMTDPAGNRKIVKERATGRVDGIVAGV 550

Query: 61  MAVGGTLGEPEDSGDLDDFLKNPIIA 86
           MAV G + + E   DLDDF+ +PII 
Sbjct: 551 MAV-GVMSKHEPEEDLDDFINSPIIG 575


>emb|CCA79311.1| putative phage terminase, large subunit [blood disease bacterium
           R229]
          Length = 537

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1   MAPAIDEFERMLLDQRLRHDGNPVMTWCAANAVLLTDPAGNRKIAKERATGRVDGMVAAV 60
           MAPAIDEFER+LLDQ+L HDGNPVMTWCAANAV + DPAGNRK+AKERATGRVDG+VAAV
Sbjct: 452 MAPAIDEFERLLLDQQLLHDGNPVMTWCAANAVTMADPAGNRKVAKERATGRVDGIVAAV 511

Query: 61  MAVGGTL 67
           MAVG TL
Sbjct: 512 MAVGCTL 518


>ref|NP_037663.1| terminase large subunit [Enterobacteria phage HK022]
 gb|AAF30354.1|AF069308_2 terminase large subunit [Enterobacteria phage HK022]
          Length = 504

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 1   MAPAIDEFERMLLDQRLRHDGNPVMTWCAANAVLLTDPAGNRKIAKERATGRVDGMVAAV 60
           M PA+D  E ++L+ R+RH  +PV+T CA NAV++ D AGNRK+ K +ATGR+DGMVA  
Sbjct: 418 MGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMT 477

Query: 61  MAVGGTLGE-PEDSGDLDDFLKNPI 84
           M+VG   GE  E  GD DDF+  P+
Sbjct: 478 MSVGAANGEVTEQGGDFDDFIFRPL 502


>gb|ADZ13585.1| terminase large subunit [Cronobacter phage ENT39118]
          Length = 504

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 1   MAPAIDEFERMLLDQRLRHDGNPVMTWCAANAVLLTDPAGNRKIAKERATGRVDGMVAAV 60
           M PA+D  E ++L+ R+RH  +PV+T CA NAV++ D AGNRK+ K +ATGR+DGMVA  
Sbjct: 418 MGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMT 477

Query: 61  MAVGGTLGE-PEDSGDLDDFLKNPI 84
           M+VG   GE  E  GD DDF+  P+
Sbjct: 478 MSVGAANGEVTEQGGDFDDFIFRPL 502


>ref|NP_037698.1| terminase large subunit [Enterobacteria phage HK97]
 gb|AAF31098.1| terminase large subunit [Enterobacteria phage HK97]
          Length = 504

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 1   MAPAIDEFERMLLDQRLRHDGNPVMTWCAANAVLLTDPAGNRKIAKERATGRVDGMVAAV 60
           M PA+D  E ++L+ R+RH  +PV+T CA NAV++ D AGNRK+ K +ATGR+DGMVA  
Sbjct: 418 MGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMT 477

Query: 61  MAVGGTLGE-PEDSGDLDDFLKNPI 84
           M+VG   GE  E  GD DDF+  P+
Sbjct: 478 MSVGAANGEVTEQGGDFDDFIFRPL 502