BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4039.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_743722.1| HK97 family phage portal protein [Pseudomonas p... 400 e-109 ref|YP_001748211.1| HK97 family phage portal protein [Pseudomona... 393 e-107 ref|ZP_02359376.1| phage portal protein, HK97 family [Burkholder... 380 e-103 ref|NP_945033.1| gp3 [Burkholderia phage phi1026b] >gi|38505385|... 376 e-102 ref|ZP_04521643.1| phage portal protein, HK97 family [Burkholder... 376 e-102 >ref|NP_743722.1| HK97 family phage portal protein [Pseudomonas putida KT2440] gb|AAN67186.1|AE016346_4 phage portal protein, HK97 family [Pseudomonas putida KT2440] Length = 431 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 208/425 (48%), Positives = 283/425 (66%), Gaps = 11/425 (2%) Query: 12 MKSA---VAGAVSGWLGREIQLTDGDFWRGWLG-NNFSGQRVTVNSTLQLSTAMACVRLL 67 MKSA VA +++GW GR+I+LTD FW + G ++ SG+ V+ + LQLST ACVRL+ Sbjct: 1 MKSAEPGVASSLAGWAGRKIRLTDSAFWNTYYGTDSASGKVVSQQTALQLSTVWACVRLI 60 Query: 68 SEVISTLPFGLYEKDKNGTPIAASDHQLYYLIHTQPNVDMTASTFWQVFMASMLLHGVAR 127 +E I+TLP LYE DKNG P+ AS H + ++I QPN D T FW+ MAS+LL G A Sbjct: 61 AETIATLPIALYE-DKNGAPVVASSHPVNFVISQQPNADQTPVEFWENVMASLLLQGNAF 119 Query: 128 VEKRMAGRTITSLIPLVPECISR-RRIAPGVYEWHYNDPILGTSRVITPANQWEVPAFTL 186 E +GRT+TSL L+P+ +S RR+A G E+ Y D G +T V AF + Sbjct: 120 CEPHQSGRTLTSLEFLLPQNMSPPRRLADGSIEYRYTDN-FGKPHTLTEDQMVHVRAFGM 178 Query: 187 NGIDGLSPIAFGANVFGAALAADKASAETFTNGLKSPGLVMMDSVLKPDQREDIRQHVDK 246 + + GLSP+A+G V G+A+AAD+++A+ F NG+K G++ D +LKPDQR+DIR+ + K Sbjct: 179 DPLCGLSPLAYGRQVLGSAMAADESAAKMFANGMKLGGVLSTDQILKPDQRKDIREDMIK 238 Query: 247 ----VQKTGTVMVMEKGAGFQQLQMNPQDAELLSTRKFNIEEICRWYRVDPSLVGHGGKD 302 G MV+E G +QQ+ M P+DA++L TR FN+EEICRW+RV P +VGH Sbjct: 239 QFSGATNHGKTMVLEAGMKYQQVSMTPEDAQMLQTRAFNVEEICRWFRVPPWMVGHTQNS 298 Query: 303 SNWGTGLEEKMTWLVTLAMRPWAVKLEQAIRKDLLRPEEKRRYYAEISLEGLLRGDSKAR 362 ++WGTG+E++M ++ + PW ++E + LLRP+E+RR+Y + + EGLLR DS AR Sbjct: 299 TSWGTGMEQQMIGFLSFTLLPWIKRIEMCANRRLLRPDERRRFYVKFNPEGLLRMDSAAR 358 Query: 363 AAFYSQMVQNGIMTRDECRRLENLPVHGGQADALTVQSNLLPIDQLGLGADGATQVRQAL 422 AAFYS M QNGI TRDECR EN+P GG A LTVQSN+LPID+LG GA Q + AL Sbjct: 359 AAFYSSMTQNGIYTRDECRLKENMPPEGGNAAKLTVQSNMLPIDKLGEDPGGANQAKAAL 418 Query: 423 NAWLS 427 WLS Sbjct: 419 LDWLS 423 >ref|YP_001748211.1| HK97 family phage portal protein [Pseudomonas putida W619] gb|ACA71842.1| phage portal protein, HK97 family [Pseudomonas putida W619] Length = 444 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 203/428 (47%), Positives = 280/428 (65%), Gaps = 8/428 (1%) Query: 6 QTWPRRMKSAVAGAVSGWLGREIQLTDGDFWRGWLG-NNFSGQRVTVNSTLQLSTAMACV 64 Q + + VA +++GW GR+I LTD FW + G ++ SG+ V+ + LQLST ACV Sbjct: 11 QALVKSAEPGVASSLAGWAGRKIGLTDSAFWNTFYGTDSASGKVVSQQTALQLSTVWACV 70 Query: 65 RLLSEVISTLPFGLYEKDKNGTPIAASDHQLYYLIHTQPNVDMTASTFWQVFMASMLLHG 124 RL++E I+TLP LYE DK G P+ AS H + ++I QPN D T FW+ MAS+LL G Sbjct: 71 RLIAETIATLPIALYE-DKKGAPVVASSHPVNFVISQQPNADQTPVEFWENVMASLLLQG 129 Query: 125 VARVEKRMAGRTITSLIPLVPECISR-RRIAPGVYEWHYNDPILGTSRVITPANQWEVPA 183 A E +GRT+TSL L+P+ +S RR+A G E+ Y D G +T V A Sbjct: 130 NAFCEPHQSGRTLTSLEFLLPQNMSPPRRLADGSIEYRYTDN-FGKPHTLTEDQMVHVRA 188 Query: 184 FTLNGIDGLSPIAFGANVFGAALAADKASAETFTNGLKSPGLVMMDSVLKPDQREDIRQH 243 F ++ + GLSP+A+G V G+A+AAD+++A+ F NG+K G++ D +LKPDQR+DIR+ Sbjct: 189 FGVDPLCGLSPLAYGRQVLGSAMAADESAAKMFANGMKLGGVLSTDQILKPDQRKDIRED 248 Query: 244 VDK----VQKTGTVMVMEKGAGFQQLQMNPQDAELLSTRKFNIEEICRWYRVDPSLVGHG 299 + K G MV+E G +QQ+ M P+DA++L TR FN+EEICRW+RV P +VGH Sbjct: 249 MIKQFSGATNHGKTMVLEAGMKYQQVSMTPEDAQMLQTRAFNVEEICRWFRVPPWMVGHT 308 Query: 300 GKDSNWGTGLEEKMTWLVTLAMRPWAVKLEQAIRKDLLRPEEKRRYYAEISLEGLLRGDS 359 ++WGTG+E++M ++ + PW ++E + LLRP+E+RR+Y + + EGLLR DS Sbjct: 309 QNSTSWGTGMEQQMIGFLSFTLLPWIKRIEMCANRRLLRPDERRRFYVKFNPEGLLRMDS 368 Query: 360 KARAAFYSQMVQNGIMTRDECRRLENLPVHGGQADALTVQSNLLPIDQLGLGADGATQVR 419 ARAAFYS M QNGI TRDECR EN+P GG A LTVQSN+LPID+LG GA Q + Sbjct: 369 AARAAFYSSMTQNGIYTRDECRLKENMPPEGGNAARLTVQSNMLPIDKLGEDPGGANQAK 428 Query: 420 QALNAWLS 427 AL WL+ Sbjct: 429 AALLDWLN 436 >ref|ZP_02359376.1| phage portal protein, HK97 family [Burkholderia oklahomensis EO147] ref|ZP_02371646.1| phage portal protein, HK97 family [Burkholderia thailandensis TXDOH] Length = 437 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 206/437 (47%), Positives = 278/437 (63%), Gaps = 11/437 (2%) Query: 1 MKTDKQTWPRRMKSAVAGAVSGWLGREIQLTDGDFWRGWLG-NNFSGQRVTVNSTLQLST 59 M KQ P R+KS + WLG I LTDG FW W G + SG+ VTV+S +QLS Sbjct: 1 MSQSKQKAPGRIKSGILK----WLGVPISLTDGSFWSAWGGLESSSGETVTVDSAMQLSA 56 Query: 60 AMACVRLLSEVISTLPFGLYEKDKNGTPIAASDHQLYYLIHTQPNVDMTASTFWQVFMAS 119 A ACVRL++E ++TLP L++K +GT A HQLY ++H QPN D TA FW+V +AS Sbjct: 57 AWACVRLIAETVATLPLNLHQKGADGTRSLAISHQLYEVLHNQPNADNTAVEFWEVIVAS 116 Query: 120 MLLHGVARVEKRMAGRTITSLIPLVPECISRRRIAPGVYEWHYNDPILGTSRVITPANQW 179 MLL G K + TI L ++P+ ++ +R+ G ++ Y D I G+ V+T + Sbjct: 117 MLLWGNGYARKLRSAGTIIGLELMLPQRMTVKRLTTGALQYTYRD-IDGSGLVLTEDDVL 175 Query: 180 EVPAFTLNGIDGLSPIAFGANVFGAALAADKASAETFTNGLKSPGLVMMDSVLKPDQRED 239 F+LNG G+S IA+ VFG A+AA+K S+ F NGL+ G++ D VL+ D+RE+ Sbjct: 176 HFRGFSLNGWMGVSVIAYAREVFGNAIAANKTSSSVFKNGLRPSGVLSTDQVLQKDKREE 235 Query: 240 IR----QHVDKVQKTGTVMVMEKGAGFQQLQMNPQDAELLSTRKFNIEEICRWYRVDPSL 295 IR + G MV+E G +Q + MNP D +LL T+ FN+EEICRW+RV P + Sbjct: 236 IRGSLAAQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETKAFNVEEICRWFRVPPFM 295 Query: 296 VGHGGKDSNWGTGLEEKMTWLVTLAMRPWAVKLEQAIRKDLLRPEEKRRYYAEISLEGLL 355 VGH K ++WGTG+E++M +T A+RPW ++EQAIR+ L P+E+ +Y+A+ S+EGLL Sbjct: 296 VGHSEKSTSWGTGIEQQMIGFLTFALRPWLTRIEQAIRRGCLTPQERTKYFAQFSVEGLL 355 Query: 356 RGDSKARAAFYSQMVQNGIMTRDECRRLENLPVHGGQADALTVQSNLLPIDQLGLGADGA 415 R DS RA+FYS M QNGIMTRDECR ENLP G A LTVQS LLPID+LG A Sbjct: 356 RADSAGRASFYSTMTQNGIMTRDECRAKENLPPMDGNAAVLTVQSALLPIDKLG-ERTAA 414 Query: 416 TQVRQALNAWLSQDKVT 432 + AL AWLSQ++ T Sbjct: 415 AAAQDALKAWLSQEEKT 431 >ref|NP_945033.1| gp3 [Burkholderia phage phi1026b] gb|AAR23154.1| gp3 [Burkholderia phage phi1026b] Length = 437 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 199/437 (45%), Positives = 274/437 (62%), Gaps = 11/437 (2%) Query: 1 MKTDKQTWPRRMKSAVAGAVSGWLGREIQLTDGDFWRGWLG-NNFSGQRVTVNSTLQLST 59 MK KQ R+KS+ WLG I LTDG FW W G + SG+ VT +S LQLS Sbjct: 1 MKQGKQRALGRIKSSFLK----WLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSA 56 Query: 60 AMACVRLLSEVISTLPFGLYEKDKNGTPIAASDHQLYYLIHTQPNVDMTASTFWQVFMAS 119 +CVRL++E I+TLP LY+ +GT + A H+LY +IH+QPN + TA+ FW+V +AS Sbjct: 57 VWSCVRLIAETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVAS 116 Query: 120 MLLHGVARVEKRMAGRTITSLIPLVPECISRRRIAPGVYEWHYNDPILGTSRVITPANQW 179 MLL G K + + L ++P+ + +R+ G ++ Y + + GT + + + Sbjct: 117 MLLWGNGYARKLRSAGVLIGLELMLPQRTTVKRLTSGALQYTYRN-VDGTVSTLAEDDVF 175 Query: 180 EVPAFTLNGIDGLSPIAFGANVFGAALAADKASAETFTNGLKSPGLVMMDSVLKPDQRED 239 V F+L+G+ GL+PI + V G + AA+K SA F NGL+ G++ D +L+ ++R + Sbjct: 176 HVRGFSLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKRAE 235 Query: 240 IR----QHVDKVQKTGTVMVMEKGAGFQQLQMNPQDAELLSTRKFNIEEICRWYRVDPSL 295 IR + + G MV+E G +Q + MNP D +LL TR FNIEEICRWYRV P + Sbjct: 236 IRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFM 295 Query: 296 VGHGGKDSNWGTGLEEKMTWLVTLAMRPWAVKLEQAIRKDLLRPEEKRRYYAEISLEGLL 355 VGH K ++WGTG+E++ +T +RPW ++EQA R+ LLRP E+ ++YAE S+EGLL Sbjct: 296 VGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLL 355 Query: 356 RGDSKARAAFYSQMVQNGIMTRDECRRLENLPVHGGQADALTVQSNLLPIDQLGLGADGA 415 R DS RAAFYS M QNG+MTRDECR ENLP GG A LTVQS LLPID+LG A Sbjct: 356 RADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHTT-A 414 Query: 416 TQVRQALNAWLSQDKVT 432 T + AL AWL Q++ T Sbjct: 415 TAAQDALKAWLYQEEKT 431 >ref|ZP_04521643.1| phage portal protein, HK97 family [Burkholderia pseudomallei MSHR346] gb|EEP50557.1| phage portal protein, HK97 family [Burkholderia pseudomallei MSHR346] Length = 437 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 198/437 (45%), Positives = 274/437 (62%), Gaps = 11/437 (2%) Query: 1 MKTDKQTWPRRMKSAVAGAVSGWLGREIQLTDGDFWRGWLG-NNFSGQRVTVNSTLQLST 59 MK KQ R+KS+ WLG I LTDG FW W G + SG+ VT +S LQLS Sbjct: 1 MKQGKQRALGRIKSSFLK----WLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSA 56 Query: 60 AMACVRLLSEVISTLPFGLYEKDKNGTPIAASDHQLYYLIHTQPNVDMTASTFWQVFMAS 119 +CVRL++E I+TLP LY+ +GT + A H+LY +IH+QPN + TA+ FW+V +AS Sbjct: 57 VWSCVRLIAETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVAS 116 Query: 120 MLLHGVARVEKRMAGRTITSLIPLVPECISRRRIAPGVYEWHYNDPILGTSRVITPANQW 179 MLL G K + + L ++P+ + +R+ G ++ Y + + GT + + + Sbjct: 117 MLLWGNGYARKLRSASVLIGLELMLPQRTTVKRLTSGALQYTYRN-VDGTVSTLAEDDVF 175 Query: 180 EVPAFTLNGIDGLSPIAFGANVFGAALAADKASAETFTNGLKSPGLVMMDSVLKPDQRED 239 V F+L+G+ GL+PI + V G + AA+K SA F NGL+ G++ D +L+ ++R + Sbjct: 176 HVRGFSLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKRAE 235 Query: 240 IR----QHVDKVQKTGTVMVMEKGAGFQQLQMNPQDAELLSTRKFNIEEICRWYRVDPSL 295 IR + + G MV+E G +Q + MNP D +LL TR FNIEEICRWYRV P + Sbjct: 236 IRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFM 295 Query: 296 VGHGGKDSNWGTGLEEKMTWLVTLAMRPWAVKLEQAIRKDLLRPEEKRRYYAEISLEGLL 355 VGH K ++WGTG+E++ +T +RPW ++EQA R+ LL+P E+ ++YAE S+EGLL Sbjct: 296 VGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLKPGERDQFYAEFSVEGLL 355 Query: 356 RGDSKARAAFYSQMVQNGIMTRDECRRLENLPVHGGQADALTVQSNLLPIDQLGLGADGA 415 R DS RAAFYS M QNG+MTRDECR ENLP GG A LTVQS LLPID+LG A Sbjct: 356 RADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHTT-A 414 Query: 416 TQVRQALNAWLSQDKVT 432 T + AL AWL Q++ T Sbjct: 415 TAAQDALKAWLYQEEKT 431