BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4032.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004700709.1| hypothetical protein PPS_1254 [Pseudomonas p... 104 5e-21 ref|ZP_03696778.1| conserved hypothetical protein [Lutiella nitr... 102 2e-20 ref|NP_746003.1| hypothetical protein PP_3873 [Pseudomonas putid... 96 2e-18 ref|YP_002649052.1| hypothetical protein EpC_20480 [Erwinia pyri... 78 4e-13 emb|CBW18040.1| predicted bacteriophage protein [Salmonella ente... 77 1e-12 >ref|YP_004700709.1| hypothetical protein PPS_1254 [Pseudomonas putida S16] gb|AEJ11829.1| conserved hypothetical protein [Pseudomonas putida S16] Length = 157 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 17/159 (10%) Query: 9 LHFEGFDGFDKKIDFDKKQIRRAMRQSGRAVQQAARKLVGKSMRSQPGAYPGRRTGRLQR 68 +H EGFD F ++I FDKKQIR+ MR++GR V + A+ + ++ YP RTGR Sbjct: 1 MHIEGFDQFGREI-FDKKQIRKGMRKAGRLVSRRAQ--LNLALARGKDNYPVSRTGRTVE 57 Query: 69 SIKLKVSRSGFLVRVAPQLTSDMKQFYPAFLHYGVKRKPGGKRKAGGKGGGSN------- 121 SI KVSR+GFLV++AP+ TS MK +YP +LHYGVK+ + A GK G Sbjct: 58 SITFKVSRAGFLVKIAPRKTSSMKDYYPTYLHYGVKQGARVRGLASGKRRGKGERAAALA 117 Query: 122 -------RVEPRGNYMVDALGDRSEEVRHMLQSAFEKAL 153 R+ PR NYM DAL D ++V+ +L++AF AL Sbjct: 118 ERAASGWRIAPRANYMEDALQDEKDQVQSILKAAFAAAL 156 >ref|ZP_03696778.1| conserved hypothetical protein [Lutiella nitroferrum 2002] gb|EEG10298.1| conserved hypothetical protein [Lutiella nitroferrum 2002] Length = 171 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 23/165 (13%) Query: 9 LHFEGFDGFDKKIDFDKKQIRRAMRQSGRAVQQAARKLVGKSMRSQPGAYPGRRTGRLQR 68 +H EGFD FDK +DFDK ++R R++G+ V A+ L+ + Q G YP RTG L Sbjct: 7 MHIEGFDEFDK-VDFDKTKVRAGFREAGKIVTGRAQMLLALG-KGQEG-YPTNRTGALLH 63 Query: 69 SIKLKVSRSGFLVRVAPQLTSDMKQFYPAFLHYGVKRKPGGKRKAGGKGGGSN------- 121 +I +VSRSGF+VRV P + + K++YPA+LHYGV++ + A G+G G + Sbjct: 64 AISFRVSRSGFMVRVMPNMPAGAKEYYPAYLHYGVRQGARVTKLAPGQGLGRSNRRARGG 123 Query: 122 -------------RVEPRGNYMVDALGDRSEEVRHMLQSAFEKAL 153 R+ PR NY+VDAL D ++EV+ +L +A +AL Sbjct: 124 RVEALAARKLTGWRIAPRDNYIVDALQDSAQEVKDVLAAALGRAL 168 >ref|NP_746003.1| hypothetical protein PP_3873 [Pseudomonas putida KT2440] gb|AAN69467.1|AE016582_5 hypothetical protein PP_3873 [Pseudomonas putida KT2440] Length = 171 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 21/157 (13%) Query: 8 YLHFEGFDGFDKKIDFDKKQIRRAMRQSGRAVQQAARKLVGKSMRSQPGAYPGRRTGRLQ 67 YLH EGFD F ++I FDKKQIR+ MR++GR V + A+ + ++ YP RTGR Sbjct: 10 YLHIEGFDQFGREI-FDKKQIRKGMRKAGRLVSRRAQ--LNLALARGQDNYPVSRTGRTV 66 Query: 68 RSIKLKVSRSGFLVRVAPQLTSDMKQFYPAFLHYGVKR-------KPG-----------G 109 SI KVSR+GFLV+V P+ TS M+ +YPA+LHYGVK+ KPG Sbjct: 67 ESITFKVSRAGFLVKVLPRKTSGMRYYYPAYLHYGVKQGHRMSRLKPGESFDRAIRERES 126 Query: 110 KRKAGGKGGGSNRVEPRGNYMVDALGDRSEEVRHMLQ 146 ++ + + PR NYM DAL D ++V+ +L+ Sbjct: 127 RKLREARRNNGWLITPRANYMEDALQDEKDQVQSILR 163 >ref|YP_002649052.1| hypothetical protein EpC_20480 [Erwinia pyrifoliae Ep1/96] emb|CAX55827.1| Phage-related protein [Erwinia pyrifoliae Ep1/96] emb|CAY74583.1| hypothetical protein EPYR_02203 [Erwinia pyrifoliae DSM 12163] Length = 168 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 82/150 (54%), Gaps = 17/150 (11%) Query: 19 KKIDFDKKQIRRAMRQSGRAVQQAARKLVGKSMRSQPGAYPGRRTGRLQRSIKLKV---- 74 K + F++ ++RRA Q G+ + AR+LV + RS PG YPG RTGRL RSI V Sbjct: 14 KDLVFNRAKMRRAFVQIGQVHMRDARRLVMRRGRSSPGQYPGFRTGRLARSIGYYVPRAS 73 Query: 75 -SRSGFLVRVAPQLTSDMKQ------FYPAFLHYGVKRKPGGKRKAG---GKGGGSN-RV 123 SR G +VR+AP FYPAFL +GV+R G KR+ GK GGS +V Sbjct: 74 KSRPGLMVRIAPNQKRGEGNRLIEGDFYPAFLFFGVRR--GAKRRKSHHKGKSGGSGWKV 131 Query: 124 EPRGNYMVDALGDRSEEVRHMLQSAFEKAL 153 PR NYM + L R R++L A +L Sbjct: 132 APRKNYMTEVLESRKAWTRYVLSRALRTSL 161 >emb|CBW18040.1| predicted bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 172 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 88/168 (52%), Gaps = 19/168 (11%) Query: 1 MAKDQGFYLHFEGFDGFDKKIDFDKKQIRRAMRQSGRAVQQAARKLVGKSMRSQPGAYPG 60 M Q YLH + +++ F++ ++RRA + G+ + AR+LV K RS+PG P Sbjct: 1 MTMPQKAYLHVDFVQ--PEELVFNRARMRRAFVKIGQVHMRDARRLVMKRGRSKPGENPS 58 Query: 61 RRTGRLQRSIKLKVSRS-----GFLVRVAPQLTSDMKQ------FYPAFLHYGVKRKPGG 109 RTG+L RSI V R+ G +V++AP + FYPAFL YGV+R G Sbjct: 59 YRTGQLARSIGYYVPRASKKRPGLMVKIAPNQKNGEGNRHINGAFYPAFLFYGVRR--GA 116 Query: 110 KRKA----GGKGGGSNRVEPRGNYMVDALGDRSEEVRHMLQSAFEKAL 153 KRK G GG RVEPR NYM + L R R++L K+L Sbjct: 117 KRKKGHHRGASGGSGWRVEPRNNYMTEVLDKRRSWTRYVLSRELRKSL 164