BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4031.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_609621.1| phage protein [Pseudomonas entomophila L48] >gi...   106   1e-21
ref|YP_004700710.1| hypothetical protein PPS_1255 [Pseudomonas p...   106   1e-21
gb|EGH42043.1| hypothetical protein PSYPI_06343 [Pseudomonas syr...   104   4e-21
ref|NP_746001.1| hypothetical protein PP_3871 [Pseudomonas putid...   103   6e-21
ref|YP_237665.1| hypothetical protein Psyr_4597 [Pseudomonas syr...   103   1e-20

>ref|YP_609621.1| phage protein [Pseudomonas entomophila L48]
 emb|CAK16837.1| putative phage protein [Pseudomonas entomophila L48]
          Length = 195

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 2   VRSLLALALVGWKPMPDFDPIEFVGGQLILQNRSRIVYRFSYLTEFQLGRGDAAGPAEIW 61
           +R+ L LALVGWKP P  +P+E+ GG+L+  +  R++YR  ++   QLGR  A+ PAE W
Sbjct: 89  LRAELWLALVGWKPAPGREPVEYAGGELLRCDTRRVLYRHRFIAPLQLGRSRASEPAETW 148

Query: 62  GDVVRDELPRLEGIKFELDAIDPMADKNLKYPGPDGRIEITINQEF 107
            +   D+LP L G+  ++DAIDP AD NL+ PGPDGRIE+T    F
Sbjct: 149 HERQLDQLPPLTGVTVQVDAIDP-ADPNLRQPGPDGRIEMTFQGTF 193


>ref|YP_004700710.1| hypothetical protein PPS_1255 [Pseudomonas putida S16]
 gb|AEJ11830.1| conserved hypothetical protein [Pseudomonas putida S16]
          Length = 197

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 3   RSLLALALVGWKPMPDFDPIEFVGGQLILQNRSRIVYRFSYLTEFQLGRGDAAGPAEIWG 62
           R  L  ALVGW+P  ++DPI + GG L+L NR+R+VYRFS+   FQLGR   + PAE W 
Sbjct: 91  RKELWRALVGWRPGEEYDPIVYDGGGLVLINRARVVYRFSFSAGFQLGRNRGSDPAETWH 150

Query: 63  DVVRDELPRLEGIKFELDAIDPMADKNLKYPGPDGRIEITINQEF 107
           +   D LP L+GI F LD++DP  D N   PGPDGR+E+  + E 
Sbjct: 151 EFELDGLPPLKGIDFSLDSLDP-KDPNHTSPGPDGRVEVRFSTEL 194


>gb|EGH42043.1| hypothetical protein PSYPI_06343 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 196

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 2   VRSLLALALVGWKPMPDFDPIEFVGGQLILQNRSRIVYRFSYLTEFQLGRGDAAGPAEIW 61
           +R+ L  ALVGW P  D+D +++ GG L+  +  R+ YRF +  +FQLGR  A  PAE W
Sbjct: 90  LRAELWRALVGWNPDHDYDAMQYTGGALVQISGDRVTYRFGFAAQFQLGRNTADQPAETW 149

Query: 62  GDVVRDELPRLEGIKFELDAIDPMADKNLKYPGPDGRIEITINQEFT 108
            +   D LP   G   E+D +DP AD NLK+PGPDGRIE     E T
Sbjct: 150 HEAYLDGLPGFTGATIEMDCVDP-ADPNLKFPGPDGRIEAKFTAEVT 195


>ref|NP_746001.1| hypothetical protein PP_3871 [Pseudomonas putida KT2440]
 gb|AAN69465.1|AE016582_3 hypothetical protein PP_3871 [Pseudomonas putida KT2440]
          Length = 155

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 3   RSLLALALVGWKPMPDFDPIEFVGGQLILQNRSRIVYRFSYLTEFQLGRGDAAGPAEIWG 62
           R  L  ALVGW+P  ++DPI + GG L+L NR+R+VYRFS+   FQLGR   + PAE W 
Sbjct: 49  RKELWRALVGWRPGDEYDPIVYDGGGLVLINRARVVYRFSFSAGFQLGRNRGSEPAETWH 108

Query: 63  DVVRDELPRLEGIKFELDAIDPMADKNLKYPGPDGRIEITINQEF 107
           +   D LP L+GI F LD++DP  D N   PGPDGR+E+  + E 
Sbjct: 109 EYELDGLPPLKGIDFSLDSLDP-KDPNHTSPGPDGRVEVRFSTEL 152


>ref|YP_237665.1| hypothetical protein Psyr_4597 [Pseudomonas syringae pv. syringae
           B728a]
 gb|AAY39627.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 196

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 2   VRSLLALALVGWKPMPDFDPIEFVGGQLILQNRSRIVYRFSYLTEFQLGRGDAAGPAEIW 61
           +R+ L  ALVGW P  D+D +++ GG L+  +  R+ YRF +  +FQLGR  A  PAE W
Sbjct: 90  LRAELWRALVGWNPDHDYDAMQYTGGALVQISGDRVTYRFGFAAQFQLGRNTADQPAETW 149

Query: 62  GDVVRDELPRLEGIKFELDAIDPMADKNLKYPGPDGRIEITINQEFT 108
            +   D LP   G   E+D +DP AD NLK PGPDGRIE     E T
Sbjct: 150 HEAYLDGLPGFTGATLEMDCVDP-ADPNLKSPGPDGRIEAKFTAEVT 195