BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4028.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_609618.1| phage tail tube protein [Pseudomonas entomophil...   158   3e-37
ref|YP_258348.1| hypothetical protein PFL_1217 [Pseudomonas fluo...   145   2e-33
ref|YP_346887.1| hypothetical protein Pfl01_1155 [Pseudomonas fl...   144   6e-33
ref|YP_004352286.1| tail tube protein [Pseudomonas brassicacearu...   143   1e-32
ref|ZP_07003420.1| outer membrane receptor protein [Pseudomonas ...   137   7e-31

>ref|YP_609618.1| phage tail tube protein [Pseudomonas entomophila L48]
 emb|CAK16834.1| putative phage tail tube protein [Pseudomonas entomophila L48]
          Length = 115

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 88/115 (76%)

Query: 1   MGQKTAGDCYIKVDGDQLVVSGGCEAPLTDTTRETVVPGYFSEKERTPYIKCDAVDTPNF 60
           MGQK AG CY+KVDG QL + GGCEAPL +  R T+VPGY+ E+ER P +K  A+ TP+F
Sbjct: 1   MGQKIAGTCYVKVDGAQLTIKGGCEAPLMEVNRTTLVPGYYKEEERRPSLKVTALHTPDF 60

Query: 61  PRAKLAEGTNMTVTCEFKNGKTYVLTGAYLVGDPTTSGDDAKAGLEFHGIKGTWQ 115
           P  KL  GT+MT+TCEF NG+ YVL GAYLVG+P + GDDA+  LEF GIKG+WQ
Sbjct: 61  PLKKLVNGTDMTITCEFSNGRVYVLAGAYLVGEPVSKGDDAEVALEFDGIKGSWQ 115


>ref|YP_258348.1| hypothetical protein PFL_1217 [Pseudomonas fluorescens Pf-5]
 gb|AAY90504.1| hypothetical protein PFL_1217 [Pseudomonas fluorescens Pf-5]
          Length = 115

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 81/115 (70%)

Query: 1   MGQKTAGDCYIKVDGDQLVVSGGCEAPLTDTTRETVVPGYFSEKERTPYIKCDAVDTPNF 60
           MGQ  AG CY+KVDG QL +SGGCEAPL    RETVVPG++ E + TP  K  A+ TP+F
Sbjct: 1   MGQLIAGTCYVKVDGAQLTISGGCEAPLMAVKRETVVPGFYKETDLTPSFKVTALHTPDF 60

Query: 61  PRAKLAEGTNMTVTCEFKNGKTYVLTGAYLVGDPTTSGDDAKAGLEFHGIKGTWQ 115
           P  +L EG +MTVTCEF NGK YVL GAYLV +P   GDDA   L F G KGTWQ
Sbjct: 61  PLKQLIEGVDMTVTCEFANGKVYVLAGAYLVDEPIAKGDDASIELNFEGQKGTWQ 115


>ref|YP_346887.1| hypothetical protein Pfl01_1155 [Pseudomonas fluorescens Pf0-1]
 gb|ABA72898.1| phage tail tube protein [Pseudomonas fluorescens Pf0-1]
          Length = 115

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/115 (60%), Positives = 83/115 (72%)

Query: 1   MGQKTAGDCYIKVDGDQLVVSGGCEAPLTDTTRETVVPGYFSEKERTPYIKCDAVDTPNF 60
           MGQ  AG CY+KVDG QL ++GGCEAPL    RETVVPG++ E +  P  K  A+ T +F
Sbjct: 1   MGQLIAGTCYVKVDGAQLTINGGCEAPLMAVKRETVVPGFYKETDIAPSFKVTALHTADF 60

Query: 61  PRAKLAEGTNMTVTCEFKNGKTYVLTGAYLVGDPTTSGDDAKAGLEFHGIKGTWQ 115
           P  KL EGT++TVTCEF NGK YVL GAYLV +P + GDDA   L+F GIKGTWQ
Sbjct: 61  PLKKLIEGTDITVTCEFSNGKVYVLAGAYLVEEPVSKGDDATIELKFEGIKGTWQ 115


>ref|YP_004352286.1| tail tube protein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gb|ACH86136.1| putative tail tube protein [Pseudomonas phage DVM-2008]
 gb|AEA67282.1| Conserved hypothetical protein; putative tail tube protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 115

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/115 (60%), Positives = 83/115 (72%)

Query: 1   MGQKTAGDCYIKVDGDQLVVSGGCEAPLTDTTRETVVPGYFSEKERTPYIKCDAVDTPNF 60
           MGQ  AG CY+KVDG QL ++GGCEAPL  T RETVVPG++ E +  P  K  A+ T +F
Sbjct: 1   MGQLIAGTCYVKVDGAQLTINGGCEAPLMFTKRETVVPGFYKETDIAPSFKVTALHTADF 60

Query: 61  PRAKLAEGTNMTVTCEFKNGKTYVLTGAYLVGDPTTSGDDAKAGLEFHGIKGTWQ 115
           P  +L  GT+MTVTCEF NGK YVL GAYLV +P + GDDA   L+F GIKGTWQ
Sbjct: 61  PLKQLVAGTDMTVTCEFNNGKVYVLAGAYLVEEPVSKGDDATIELKFEGIKGTWQ 115


>ref|ZP_07003420.1| outer membrane receptor protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gb|EFI01207.1| outer membrane receptor protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 115

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 83/115 (72%)

Query: 1   MGQKTAGDCYIKVDGDQLVVSGGCEAPLTDTTRETVVPGYFSEKERTPYIKCDAVDTPNF 60
           MGQK AG CYIKVDG QL +SGG EAPL +  RETVVPGY+ E E+  ++K  AV T + 
Sbjct: 1   MGQKVAGTCYIKVDGTQLTISGGGEAPLMNIKRETVVPGYYKETEKAAWLKLTAVHTADL 60

Query: 61  PRAKLAEGTNMTVTCEFKNGKTYVLTGAYLVGDPTTSGDDAKAGLEFHGIKGTWQ 115
           P   L  G +MT+TCEFKNGKTYVL+GAYLV +P++  DD    L+F G +G+WQ
Sbjct: 61  PLKLLTTGVDMTITCEFKNGKTYVLSGAYLVDEPSSKADDGTIELQFDGNQGSWQ 115