BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4027.p (174 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004700714.1| phage protein [Pseudomonas putida S16] >gi|3... 86 1e-15 ref|NP_745996.1| hypothetical protein PP_3866 [Pseudomonas putid... 85 3e-15 ref|YP_258349.1| hypothetical protein PFL_1218 [Pseudomonas fluo... 81 7e-14 ref|YP_346888.1| sigma-factor domain-containing protein [Pseudom... 78 4e-13 ref|ZP_03696784.1| phage protein [Lutiella nitroferrum 2002] >gi... 77 7e-13 >ref|YP_004700714.1| phage protein [Pseudomonas putida S16] gb|AEJ11834.1| phage protein [Pseudomonas putida S16] Length = 98 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 58/89 (65%) Query: 1 MKLSKPIMAHGQQLTEITLRSPTGQQIRAARALPYWMAGDNAMAINTEAASRLLVACAAI 60 +KLS PI AHG +T++ LR PT Q++R +ALPY M D A++++ + A++ + CAAI Sbjct: 5 IKLSAPIQAHGADVTQLELRRPTVQEVRNIKALPYKMDKDEAVSLDMDVAAKYIAVCAAI 64 Query: 61 PQSSVDQLAAVDRNQLYWEVVGFFLGQES 89 P SSV+QL D N W V GFFL S Sbjct: 65 PTSSVNQLDLADLNNAAWTVAGFFLAPAS 93 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 45/75 (60%) Query: 97 FDLKEPGGKFTREVKALPYWVSPDGSMTINTDAASKYLVHCSGKDQEALDELSAREINSL 156 +L+ P + R +KALPY + D +++++ D A+KY+ C+ ++++L ++N+ Sbjct: 21 LELRRPTVQEVRNIKALPYKMDKDEAVSLDMDVAAKYIAVCAAIPTSSVNQLDLADLNNA 80 Query: 157 YWAIAGFFLGGTSET 171 W +AGFFL S T Sbjct: 81 AWTVAGFFLAPASAT 95 >ref|NP_745996.1| hypothetical protein PP_3866 [Pseudomonas putida KT2440] gb|AAN69460.1|AE016581_9 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 107 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 58/89 (65%) Query: 1 MKLSKPIMAHGQQLTEITLRSPTGQQIRAARALPYWMAGDNAMAINTEAASRLLVACAAI 60 + LS PI AHG ++T++ LR PT Q++R +ALPY M D A++++ + A++ + CAAI Sbjct: 14 INLSAPIQAHGAEVTQLELRRPTVQEVRNIKALPYKMDKDEAVSLDMDVAAKYIAVCAAI 73 Query: 61 PQSSVDQLAAVDRNQLYWEVVGFFLGQES 89 P SSV+QL D N W V GFFL S Sbjct: 74 PTSSVNQLDLADLNNAAWTVAGFFLAPAS 102 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 45/75 (60%) Query: 97 FDLKEPGGKFTREVKALPYWVSPDGSMTINTDAASKYLVHCSGKDQEALDELSAREINSL 156 +L+ P + R +KALPY + D +++++ D A+KY+ C+ ++++L ++N+ Sbjct: 30 LELRRPTVQEVRNIKALPYKMDKDEAVSLDMDVAAKYIAVCAAIPTSSVNQLDLADLNNA 89 Query: 157 YWAIAGFFLGGTSET 171 W +AGFFL S T Sbjct: 90 AWTVAGFFLAPASAT 104 >ref|YP_258349.1| hypothetical protein PFL_1218 [Pseudomonas fluorescens Pf-5] gb|AAY90505.1| hypothetical protein PFL_1218 [Pseudomonas fluorescens Pf-5] Length = 98 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 58/90 (64%) Query: 1 MKLSKPIMAHGQQLTEITLRSPTGQQIRAARALPYWMAGDNAMAINTEAASRLLVACAAI 60 +KL PI AHG+ L E++LR PT Q++RA +ALPY + ++++ + A++ + CA I Sbjct: 5 VKLQVPIEAHGEPLAELSLRRPTVQEVRAIKALPYKIDKSEEVSLDMDVAAKYIAVCAGI 64 Query: 61 PQSSVDQLAAVDRNQLYWEVVGFFLGQESE 90 P SSV+QL VD N L W V FF+ S+ Sbjct: 65 PPSSVNQLDLVDLNALSWAVASFFMSAASQ 94 Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 47/83 (56%) Query: 88 ESEEEVQLPFDLKEPGGKFTREVKALPYWVSPDGSMTINTDAASKYLVHCSGKDQEALDE 147 E+ E L+ P + R +KALPY + ++++ D A+KY+ C+G ++++ Sbjct: 12 EAHGEPLAELSLRRPTVQEVRAIKALPYKIDKSEEVSLDMDVAAKYIAVCAGIPPSSVNQ 71 Query: 148 LSAREINSLYWAIAGFFLGGTSE 170 L ++N+L WA+A FF+ S+ Sbjct: 72 LDLVDLNALSWAVASFFMSAASQ 94 >ref|YP_346888.1| sigma-factor domain-containing protein [Pseudomonas fluorescens Pf0-1] gb|ABA72899.1| putative sigma factor domain protein [Pseudomonas fluorescens Pf0-1] Length = 98 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 56/90 (62%) Query: 1 MKLSKPIMAHGQQLTEITLRSPTGQQIRAARALPYWMAGDNAMAINTEAASRLLVACAAI 60 +KL I AHG+ LTE+ LR PT Q++RA +ALPY + ++++ + A++ + CA I Sbjct: 5 VKLQVAIEAHGEPLTELVLRRPTVQEVRAIKALPYKIDKSEEVSLDMDVAAKYIAVCAGI 64 Query: 61 PQSSVDQLAAVDRNQLYWEVVGFFLGQESE 90 P SSV+QL D N L W V FF+ SE Sbjct: 65 PPSSVNQLDLADLNALSWAVASFFMSAASE 94 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 44/72 (61%) Query: 99 LKEPGGKFTREVKALPYWVSPDGSMTINTDAASKYLVHCSGKDQEALDELSAREINSLYW 158 L+ P + R +KALPY + ++++ D A+KY+ C+G ++++L ++N+L W Sbjct: 23 LRRPTVQEVRAIKALPYKIDKSEEVSLDMDVAAKYIAVCAGIPPSSVNQLDLADLNALSW 82 Query: 159 AIAGFFLGGTSE 170 A+A FF+ SE Sbjct: 83 AVASFFMSAASE 94 >ref|ZP_03696784.1| phage protein [Lutiella nitroferrum 2002] gb|EEG10304.1| phage protein [Lutiella nitroferrum 2002] Length = 99 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 51/89 (57%) Query: 1 MKLSKPIMAHGQQLTEITLRSPTGQQIRAARALPYWMAGDNAMAINTEAASRLLVACAAI 60 ++LS PI AHG+++TE+ LR P + RA +PY + N IN AA + + CA I Sbjct: 6 IQLSAPITAHGEEMTELVLRKPVPAEARAIGVVPYSLGEGNVPTINIPAACQYISKCAGI 65 Query: 61 PQSSVDQLAAVDRNQLYWEVVGFFLGQES 89 P +SVDQL D N W V GFFL S Sbjct: 66 PPTSVDQLDIADLNTACWVVAGFFLNAGS 94