BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4025.p (411 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004700716.1| putative phage FluMu DNA circulation protein... 343 2e-92 ref|NP_745994.1| phage FluMu DNA circulation protein [Pseudomona... 337 2e-90 ref|YP_258351.1| DNA circulation protein, N-terminal domain-cont... 270 3e-70 ref|ZP_07003424.1| Tail/DNA circulation protein [Pseudomonas sav... 259 6e-67 ref|ZP_06456535.1| prophage PSPPH01, DNA circulation protein [Ps... 258 2e-66 >ref|YP_004700716.1| putative phage FluMu DNA circulation protein [Pseudomonas putida S16] gb|AEJ11836.1| putative phage FluMu DNA circulation protein [Pseudomonas putida S16] Length = 420 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 204/422 (48%), Positives = 280/422 (66%), Gaps = 13/422 (3%) Query: 1 MSHWKKRLKPASFRGVPFRVNTETSPVGRDVVVFEYPGKDKPRVEDMGRKTRTIRFVAFV 60 MS W+ + ASFRGVPF V++++ PVGR + EYP +D+P VEDMGR+TR +F F+ Sbjct: 1 MSEWRDLRREASFRGVPFWVDSDSVPVGRRTQLHEYPKRDQPLVEDMGRQTREYKFDGFI 60 Query: 61 IGPACLDERDALLAALDKPGEGELIHPWYGRMKVTATSDCTASHSWDEGGVVRFELVFVE 120 IGP + +RD LLAALD PG GEL+HPW+GR+ VTA DC SHS E G+VRF L F++ Sbjct: 61 IGPDFISQRDRLLAALDTPGPGELVHPWFGRLTVTA-GDCEISHSRFELGMVRFNLAFID 119 Query: 121 AGELGFPIATANTAQQVQTSAKSVKDSALSRFSEAMAAVNMARVKVAAIQANVAAVYGAV 180 G L FP+ NT +Q+ ++ +S +RF+ MA VN AR +V ++ +A+ Y Sbjct: 120 -GALAFPVQRVNTRRQLAAHVPTLLESIKARFAAVMAKVNWARQQVNKVRRAIASAYAFA 178 Query: 181 NNYIKPLSSLFSSTSVMVDSLMNAPSSFGATVFSALADLERPFSSFGSSSSSVSSSGA-- 238 N++KPL+SL + +V SL+NAP + A++ S +A +ER FS +GS+ SS+ SS A Sbjct: 179 INFLKPLTSLVADIGALVQSLINAPGALAASLLSDIASIERWFSGYGSTGSSLQSSKAKA 238 Query: 239 -AITALAQAPVSGGQ-DAQGVQSALVGLMQDAATYNGMLDAAAVPIPAPAVT---ASATP 293 AITAL+ V+ D +QSA++GL+QDAA + +LD A VP+ + A+ + Sbjct: 239 EAITALSATRVATDDPDTALIQSAVIGLVQDAALVDLLLDMAEVPVASVRSIEQPAALSV 298 Query: 294 SLDMQAATVTT----PAEVPVADDIAAARDDLAEAVFQYALYSPLSHYDTLDAARQAVNA 349 L+ Q ATVT+ A VPVADDI A RD ++EA++ A S H+ L ARQA++ Sbjct: 299 QLEQQGATVTSGSVMDAGVPVADDILAVRDAISEAMWTIAEDSQPDHFGVLSDARQALDR 358 Query: 350 HLSAVARAGVRLRTEVPAATVPALVLAYRLYGDASRGSEIVSRNRIRHAGFVPAVELQVA 409 HL+ VAR+GV L P VP+LVLA+RLYGDA RGSEIV+RN+IRH GFVPA+ELQVA Sbjct: 359 HLTDVARSGVWLHPYRPRLAVPSLVLAHRLYGDALRGSEIVTRNKIRHPGFVPAIELQVA 418 Query: 410 RS 411 +S Sbjct: 419 KS 420 >ref|NP_745994.1| phage FluMu DNA circulation protein [Pseudomonas putida KT2440] gb|AAN69458.1|AE016581_7 phage FluMu DNA circulation protein, putative [Pseudomonas putida KT2440] Length = 420 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 201/422 (47%), Positives = 277/422 (65%), Gaps = 13/422 (3%) Query: 1 MSHWKKRLKPASFRGVPFRVNTETSPVGRDVVVFEYPGKDKPRVEDMGRKTRTIRFVAFV 60 MS W+ + ASFRGVPF V++++ PVGR + EYP +D+P VEDMGR+TR +F F+ Sbjct: 1 MSEWRDLRREASFRGVPFWVDSDSVPVGRRTQLHEYPKRDQPLVEDMGRQTREYKFDGFI 60 Query: 61 IGPACLDERDALLAALDKPGEGELIHPWYGRMKVTATSDCTASHSWDEGGVVRFELVFVE 120 IGP + +RD LL ALD PG GEL+HPW+GR+ VTA DC SHS E G+VRF L F++ Sbjct: 61 IGPDFISQRDRLLVALDTPGPGELVHPWFGRLTVTA-GDCEISHSRFELGMVRFNLAFID 119 Query: 121 AGELGFPIATANTAQQVQTSAKSVKDSALSRFSEAMAAVNMARVKVAAIQANVAAVYGAV 180 G L FP+ NT +Q+ ++ +SA +RF AMA VN AR +V ++ V++ Y Sbjct: 120 -GTLAFPVQRVNTRRQLAAHVPTLLESAKARFDAAMAQVNWARQQVNKVRRAVSSAYAFA 178 Query: 181 NNYIKPLSSLFSSTSVMVDSLMNAPSSFGATVFSALADLERPFSSFGSSSSSVSSSGA-- 238 ++KPL+SL + +V SL+N P + A++ S +A +ER FS +GS+ SS+ SS A Sbjct: 179 MTFLKPLTSLAADVGALVQSLINVPDALSASLLSDIASIERWFSGYGSTGSSLQSSKAKA 238 Query: 239 -AITALAQAPVSGGQ-DAQGVQSALVGLMQDAATYNGMLDAAAVPIPAPAVT---ASATP 293 AITAL+ A ++ D +QSA++GL+QDAA + +LD A VP+ + A+ + Sbjct: 239 EAITALSTARLATDDPDIALIQSAVIGLVQDAALVDLLLDMAEVPVASVRSVEQPAALSV 298 Query: 294 SLDMQAATVTTPAE----VPVADDIAAARDDLAEAVFQYALYSPLSHYDTLDAARQAVNA 349 L+ Q TV + + VPVADDI A RD ++EA++ A S H+ L ARQA++ Sbjct: 299 QLEQQGTTVASGSALDTGVPVADDILAVRDAISEAMWTIAEDSLPDHFGVLSDARQALDR 358 Query: 350 HLSAVARAGVRLRTEVPAATVPALVLAYRLYGDASRGSEIVSRNRIRHAGFVPAVELQVA 409 HL+ VAR+GV LR P VP+LVLA+RLYGDA RGSEIV+RN+IRH GFVPA ELQVA Sbjct: 359 HLTDVARSGVWLRPYHPRLAVPSLVLAHRLYGDALRGSEIVTRNKIRHPGFVPATELQVA 418 Query: 410 RS 411 +S Sbjct: 419 KS 420 >ref|YP_258351.1| DNA circulation protein, N-terminal domain-containing protein [Pseudomonas fluorescens Pf-5] gb|AAY90507.1| DNA circulation protein, N-terminal domain protein [Pseudomonas fluorescens Pf-5] Length = 414 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 153/413 (37%), Positives = 230/413 (55%), Gaps = 8/413 (1%) Query: 3 HWKKRLKPASFRGVPFRVNTETSPVGRDVVVFEYPGKDKPRVEDMGRKTRTIRFVAFVIG 62 +W+ RL PASFRGVPF V+ +PVG+ + EYP +D+P E +G++ + AF++G Sbjct: 4 NWRDRLLPASFRGVPFWVDQAKTPVGQKGQLHEYPQRDQPFFEGLGQQAKVHDLTAFIVG 63 Query: 63 PACLDERDALLAALDKPGEGELIHPWYGRMKVTATSDCTASHSWDEGGVVRFELVFVEAG 122 CL++RD LL AL++ G GEL+HPW GRM+V +C + S +GG+V F L F Sbjct: 64 ADCLEQRDRLLKALEE-GSGELVHPWLGRMQVK-VGECEMTQSRQDGGLVTFSLKFYPDQ 121 Query: 123 ELGFPIATANTAQQVQTSAKSVKDSALSRFSEAMAAVNMARVKVAAIQANVAAVYGAVNN 182 L FP A NT QQV ++ ++ SA+ RF A + AR+ V +++ + VY + + Sbjct: 122 PLRFPSAVVNTQQQVLVASDTLLGSAVLRFEFATNLIKQARIGVDSLRKGLTEVYAVIEH 181 Query: 183 YIKPLSSLFSSTSVMVDSLMNAPSSFGATVFSALADLERPFSSFGSSS-----SSVSSSG 237 KPL + + +V ++ P +T F L + R F + + +S Sbjct: 182 EFKPLIEFYGDLNTLVKAVKEIPKEL-STEFKGLLEDVRGLKDFARTGYRQMLADISQQV 240 Query: 238 AAITALAQAPVSGGQDAQGVQSALVGLMQDAATYNGMLDAAAVPIPAPAVTASATPSLDM 297 A + ++ G+D A+ L+QDA +A+P+ P V +TP L Sbjct: 241 EAARRIDAPKLTTGKDTTAAAEAVANLVQDALLVQIARLVSALPVATPVVKLKSTPPLAQ 300 Query: 298 QAATVTTPAEVPVADDIAAARDDLAEAVFQYALYSPLSHYDTLDAARQAVNAHLSAVARA 357 QA+ EVPVADD+ A RD L E ++Q AL + HY L+ RQ + HL+AVA + Sbjct: 301 QASQPVQRLEVPVADDVLALRDQLNEVIWQAALKADPMHYQALNTLRQQLQGHLNAVASS 360 Query: 358 GVRLRTEVPAATVPALVLAYRLYGDASRGSEIVSRNRIRHAGFVPAVELQVAR 410 GVRL + P +++PALVLAY + DA+R E+V RNR+ H GF+P +LQ+AR Sbjct: 361 GVRLVSLSPKSSMPALVLAYERFADATRVGEVVQRNRVAHPGFLPPADLQIAR 413 >ref|ZP_07003424.1| Tail/DNA circulation protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EFI01211.1| Tail/DNA circulation protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 446 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 154/446 (34%), Positives = 240/446 (53%), Gaps = 37/446 (8%) Query: 1 MSHWKKRLKPASFRGVPFRVNTETSPVGRDVVVFEYPGKDKPRVEDMGRKTRTIRFVAFV 60 MS W+ L PASFRGV F + P GR + E+P +D+P E +G++++ F+ Sbjct: 1 MSTWRDSLLPASFRGVGFFIEKAVVPAGRKGQLHEFPQRDEPYFESLGKQSKVHTLTGFI 60 Query: 61 IGPACLDERDALLAALDKPGEGELIHPWYGRMKVTATSDCTASHSWDEGGVVRFELVFVE 120 +GP C ++RD LL AL++ G GEL+HPW GR++V +C +H+ +EGG+VR +L F Sbjct: 61 VGPDCFEQRDRLLQALEQEGAGELVHPWLGRVQVQ-VGECGVTHNLNEGGLVRLDLKFYP 119 Query: 121 AGELGFPIATANTAQQVQTSAKSVKDSALSRFSEAMAAVNMARVKVAAIQANVAAVYGAV 180 A L FP++T NT +Q+ +++S+ DSAL R+ MA V+ R+ + A+++ ++ V+ + Sbjct: 120 ANPLKFPVSTLNTRRQLLGASESLLDSALRRYRSVMATVDAVRINIQALRSALSGVFATI 179 Query: 181 NNYIKPLSSLFSSTSVMVDSLMNAP---SSFGATVFSAL-ADLERP-------------- 222 P +++S + +V SL+NAP S+ T F++ D +R Sbjct: 180 QRQFVPFMAIYSDVTALVHSLVNAPLTVSTLFTTFFASFDGDSQRARRASGTSSSGSSVT 239 Query: 223 --------FSSFGSSS----------SSVSSSGAAITALAQAPVSGGQDAQGVQSALVGL 264 + G+SS S + A++ + G+D A L Sbjct: 240 GSSASDSASGNGGASSVETVDYRSVISEATQQAEAVSGINLVSQGSGRDTSVTAQATANL 299 Query: 265 MQDAATYNGMLDAAAVPIPAPAVTASATPSLDMQAATVTTPAEVPVADDIAAARDDLAEA 324 +QDA A++PI + PSLD Q +VPVADD+ RD L+ A Sbjct: 300 VQDALLVKVARIVASMPIATTVTPLNVVPSLDQQVTQALQRVDVPVADDVIELRDTLSSA 359 Query: 325 VFQYALYSPLSHYDTLDAARQAVNAHLSAVARAGVRLRTEVPAATVPALVLAYRLYGDAS 384 +++ +L + HY L+ RQA+ HL+AVA +GVRL + +PALVLAYR +GDAS Sbjct: 360 IWEASLKADPEHYLALNTLRQALIRHLNAVAASGVRLVDMKVSEPLPALVLAYRRFGDAS 419 Query: 385 RGSEIVSRNRIRHAGFVPAVELQVAR 410 R E+V RNR+ H GFVP L++A+ Sbjct: 420 RAQEMVQRNRLAHPGFVPPGTLKIAQ 445 >ref|ZP_06456535.1| prophage PSPPH01, DNA circulation protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] ref|ZP_06482156.1| prophage PSPPH01, DNA circulation protein [Pseudomonas syringae pv. aesculi str. 2250] gb|EGH03234.1| prophage PSPPH01, DNA circulation protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 446 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 154/446 (34%), Positives = 239/446 (53%), Gaps = 37/446 (8%) Query: 1 MSHWKKRLKPASFRGVPFRVNTETSPVGRDVVVFEYPGKDKPRVEDMGRKTRTIRFVAFV 60 MS W+ L PASFRGV F + P GR + E+P +D+P E +G++++ F+ Sbjct: 1 MSTWRDSLLPASFRGVGFFIEKAVVPAGRKGQLHEFPQRDEPYFESLGKQSKVHTLTGFI 60 Query: 61 IGPACLDERDALLAALDKPGEGELIHPWYGRMKVTATSDCTASHSWDEGGVVRFELVFVE 120 +GP C ++RD LL AL++ G GEL+HPW GR++V +C +H+ EGG+VR +L F Sbjct: 61 VGPDCFEQRDRLLQALEQEGAGELVHPWLGRVQVQ-VGECGVTHNLSEGGLVRLDLKFYP 119 Query: 121 AGELGFPIATANTAQQVQTSAKSVKDSALSRFSEAMAAVNMARVKVAAIQANVAAVYGAV 180 A L FP++T NT +Q+ +++S+ DSAL R+ MA V+ R+ + A+++ ++ V+ + Sbjct: 120 ANPLKFPVSTLNTRRQLLGASESLLDSALRRYRSVMATVDAVRINIQALRSALSGVFATI 179 Query: 181 NNYIKPLSSLFSSTSVMVDSLMNAP---SSFGATVFSAL-ADLERP-------------- 222 P +++S + +V SL+NAP S+ T F++ D +R Sbjct: 180 QRQFVPFMAIYSDVTALVHSLVNAPLTVSTLFTTFFASFDGDSQRARRASGTSSSGSSVT 239 Query: 223 --------FSSFGSSS----------SSVSSSGAAITALAQAPVSGGQDAQGVQSALVGL 264 + G+SS S + A++ + G+D A L Sbjct: 240 GSSASDSASGNGGASSVETVDYRSVISEATQQAEAVSGINLVSQGSGRDTSVTAQATANL 299 Query: 265 MQDAATYNGMLDAAAVPIPAPAVTASATPSLDMQAATVTTPAEVPVADDIAAARDDLAEA 324 +QDA A++PI + PSLD Q +VPVADD+ RD L+ A Sbjct: 300 VQDALLVKVARIVASMPIATTVTPLNVVPSLDQQVTQALQRVDVPVADDVIELRDTLSSA 359 Query: 325 VFQYALYSPLSHYDTLDAARQAVNAHLSAVARAGVRLRTEVPAATVPALVLAYRLYGDAS 384 +++ +L + HY L+ RQA+ HL+AVA +GVRL + +PALVLAYR +GDAS Sbjct: 360 IWEASLKADPEHYLALNTLRQALIRHLNAVAASGVRLVDMKVSEPLPALVLAYRRFGDAS 419 Query: 385 RGSEIVSRNRIRHAGFVPAVELQVAR 410 R E+V RNR+ H GFVP L++A+ Sbjct: 420 RAQEMVQRNRLAHPGFVPPGTLKIAQ 445