BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4024.p (371 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004700717.1| putative phage tail protein [Pseudomonas put... 407 e-111 ref|NP_745993.1| phage tail protein [Pseudomonas putida KT2440] ... 403 e-110 gb|EGH61291.1| bacteriophage Mu P [Pseudomonas syringae pv. macu... 335 6e-90 ref|YP_237658.1| bacteriophage Mu P [Pseudomonas syringae pv. sy... 335 8e-90 gb|EGH55323.1| bacteriophage Mu P [Pseudomonas syringae Cit 7] 334 2e-89 >ref|YP_004700717.1| putative phage tail protein [Pseudomonas putida S16] gb|AEJ11837.1| putative phage tail protein [Pseudomonas putida S16] Length = 369 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 213/370 (57%), Positives = 265/370 (71%), Gaps = 4/370 (1%) Query: 1 MADREIVTLTVNGQDYAGWMDVDIGAGVLRLARDFTLTVTWDWPSNQGGDVRIRQGDRCG 60 M VTL+V DY GW DV I AG+ R ARDF++ VTW WP + VRI+QG+ Sbjct: 1 MEPDNTVTLSVGAHDYGGWKDVSISAGLERQARDFSVGVTWKWPGSGEMPVRIQQGETVE 60 Query: 61 VSIDGELVLTGYVFGTPVRHDAKSLSLSIKGRSLTADLVDCCPDDKPGQWRNQTIENIAR 120 V I +LVLTGYVF TP+R+DA S++LSI GRS TADLVDC + PGQWR Q+++ I Sbjct: 61 VRIGNDLVLTGYVFSTPIRYDAHSITLSISGRSKTADLVDCAAVNSPGQWRGQSVQKIVE 120 Query: 121 ALVKPYGITVVNEAGDRTMVKDHTVKPGETVFESLDRLLTLSRLLAMDDGRGRMVMVRPG 180 AL YGI VVNEA + DHT++PGET FES+DRLLTLSRL + DDGRGR+V+ PG Sbjct: 121 ALAGEYGIKVVNEAAVTLGLDDHTIEPGETAFESIDRLLTLSRLFSTDDGRGRLVIATPG 180 Query: 181 SAGRAHDRLARGENILSGESDLDFSNVFSEYVAKGQQSGSDDDDDEENSAQVAASSVDTR 240 +AGRA D L G+NILSG+++LDFSNVFSEY+++GQ+SG+D S +V A+ D R Sbjct: 181 TAGRAVDNLELGKNILSGDTNLDFSNVFSEYISRGQRSGTDTTFGTAAS-EVEATLADDR 239 Query: 241 VSRHRRLVIRESGQITKELAQWRADWERESRISRALEATYTVQGWYQSNGALWRPNMVVR 300 V+R R VI +SGQ+T +A+ R DWER + ISRAL Y VQGW QSNGALWR NM+VR Sbjct: 240 VTRRRVKVIHQSGQMTPAMARARVDWERANAISRALTLNYVVQGWRQSNGALWRHNMIVR 299 Query: 301 VVDQIIGFDRDMLISEVSYKRSRSAGTTAVLKVAPPDGFEPEPNDKRKRMKLKKSK--DG 358 V+D +IG DRDMLISE++Y+ S GT + VAPPDGF PEPND + KLKK K D Sbjct: 300 VIDPLIGLDRDMLISEINYELGES-GTVCKVTVAPPDGFLPEPNDAYESRKLKKGKKTDN 358 Query: 359 FEYLLPADWE 368 FEYL+PAD++ Sbjct: 359 FEYLIPADYK 368 >ref|NP_745993.1| phage tail protein [Pseudomonas putida KT2440] gb|AAN69457.1|AE016581_6 phage tail protein, putative [Pseudomonas putida KT2440] Length = 369 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 210/370 (56%), Positives = 266/370 (71%), Gaps = 4/370 (1%) Query: 1 MADREIVTLTVNGQDYAGWMDVDIGAGVLRLARDFTLTVTWDWPSNQGGDVRIRQGDRCG 60 M VTL+V G DYAGW +V I AG+ R ARDF++ +TW WP VRI+QG+ Sbjct: 1 MEPDNTVTLSVGGHDYAGWKEVSISAGLERQARDFSVGITWKWPGGGDMPVRIQQGEAVE 60 Query: 61 VSIDGELVLTGYVFGTPVRHDAKSLSLSIKGRSLTADLVDCCPDDKPGQWRNQTIENIAR 120 V I +LVLTGYVF TP+R+DA +++LSI GRS TADLVDC + PGQWR Q+++ I Sbjct: 61 VRIGDDLVLTGYVFSTPIRYDAHTINLSIAGRSKTADLVDCAAINSPGQWRGQSVQKIVE 120 Query: 121 ALVKPYGITVVNEAGDRTMVKDHTVKPGETVFESLDRLLTLSRLLAMDDGRGRMVMVRPG 180 AL YGI VVNEA + DHT++PGET FES+DRLLTLSRL + DDGRGR+V+ PG Sbjct: 121 ALAGEYGIKVVNEATTTLGLDDHTIEPGETAFESIDRLLTLSRLFSTDDGRGRLVIATPG 180 Query: 181 SAGRAHDRLARGENILSGESDLDFSNVFSEYVAKGQQSGSDDDDDEENSAQVAASSVDTR 240 +AGRA D L G+NIL+G+++LDFSNVFSEY+++GQ+SG+D S +V A D R Sbjct: 181 TAGRAVDTLELGKNILTGDTNLDFSNVFSEYISRGQRSGTDTMFGTAAS-EVEAKLADDR 239 Query: 241 VSRHRRLVIRESGQITKELAQWRADWERESRISRALEATYTVQGWYQSNGALWRPNMVVR 300 V+R R VI +SGQ+T +A+ R +WER + ISRA+ YTVQGW QSNGALWR NM+VR Sbjct: 240 VARRRVKVINQSGQMTPAMARARVEWERANAISRAMTLNYTVQGWRQSNGALWRHNMIVR 299 Query: 301 VVDQIIGFDRDMLISEVSYKRSRSAGTTAVLKVAPPDGFEPEPNDKRKRMKLKKSK--DG 358 V+D +IG DRDMLISE++Y+ S GT + VAPPDGF PEPND + KLKK K D Sbjct: 300 VLDPLIGLDRDMLISEINYELGES-GTVCKVTVAPPDGFLPEPNDAYESRKLKKGKKTDN 358 Query: 359 FEYLLPADWE 368 FEYL+PAD++ Sbjct: 359 FEYLIPADYK 368 >gb|EGH61291.1| bacteriophage Mu P [Pseudomonas syringae pv. maculicola str. ES4326] Length = 369 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 173/368 (47%), Positives = 235/368 (63%), Gaps = 2/368 (0%) Query: 1 MADREIVTLTVNGQDYAGWMDVDIGAGVLRLARDFTLTVTWDWPSNQGGDVRIRQGDRCG 60 M D +VTLTV+ DYAGW V+I AG+ R AR F +++TW WP + I G C Sbjct: 1 MIDPNVVTLTVDEHDYAGWKTVEISAGIERQARSFDVSITWQWPGTEVAH-PIMPGAACE 59 Query: 61 VSIDGELVLTGYVFGTPVRHDAKSLSLSIKGRSLTADLVDCCPDDKPGQWRNQTIENIAR 120 V I GEL+LTG+VF P+ +D K ++L I GRS TADL+DC +KP QW+ + I + Sbjct: 60 VRIGGELILTGWVFAAPISYDGKQVTLKISGRSKTADLIDCAAINKPSQWKEVGVLKIVQ 119 Query: 121 ALVKPYGITVVNEAGDRTMVKDHTVKPGETVFESLDRLLTLSRLLAMDDGRGRMVMVRPG 180 AL PY ++V++E + + + DHT++P E+VF+S+DRLLTL R+ + DD G +V+ RPG Sbjct: 120 ALAAPYALSVISEIPETSKMADHTIEPAESVFKSIDRLLTLFRIFSTDDEHGNVVLARPG 179 Query: 181 SAGRAHDRLARGENILSGESDLDFSNVFSEYVAKGQQSGSDDDDDEENSAQVAASSVDTR 240 S G+ D L G+N+LS DFS +FSEY GQQ+G+D +E S A ++ D Sbjct: 180 SRGQTADALELGKNVLSASIARDFSGLFSEYRVIGQQAGNDKTFGKEASEVSAVATDDRN 239 Query: 241 VSRHRRLVIRESGQITKELAQWRADWERESRISRALEATYTVQGWYQSNGALWRPNMVVR 300 R R L++ E IT LA RA+WER R +AL TY VQGW QSNGALWR N +V+ Sbjct: 240 KDRLRVLIVHEDAPITPRLALSRANWERGQRAGKALLTTYKVQGWRQSNGALWRHNTMVQ 299 Query: 301 VVDQIIGFDRDMLISEVSYKRSRSAGTTAVLKVAPPDGFEPEPNDKRKRMKLKKSKDGFE 360 VVD +IG R+MLIS V+Y + GTT L V PP+GF+ EP D KR K++ ++D + Sbjct: 300 VVDPVIGLGRNMLISAVTYSLT-DQGTTTTLVVGPPEGFQAEPGDPNKRSKVQLNQDAYS 358 Query: 361 YLLPADWE 368 +LLP D E Sbjct: 359 WLLPIDEE 366 >ref|YP_237658.1| bacteriophage Mu P [Pseudomonas syringae pv. syringae B728a] gb|AAY39620.1| Bacteriophage Mu P [Pseudomonas syringae pv. syringae B728a] gb|EGH70874.1| bacteriophage Mu P [Pseudomonas syringae pv. aceris str. M302273PT] Length = 375 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 180/378 (47%), Positives = 241/378 (63%), Gaps = 10/378 (2%) Query: 1 MADREIVTLTVNGQDYAGWMDVDIGAGVLRLARDFTLTVTWDWPSNQGGDVRIRQGDRCG 60 M D +VTLTV+ DYAGW V+I AG+ R AR F +++TW WP + I G C Sbjct: 1 MIDPNVVTLTVDEHDYAGWKSVEISAGIERQARSFDVSITWQWPGTEISH-PITPGAACE 59 Query: 61 VSIDGELVLTGYVFGTPVRHDAKSLSLSIKGRSLTADLVDCCPDDKPGQWRNQTIENIAR 120 V I GEL+LTG+VF P+ +D K ++L I GRS TADL+DC +KP QW+ + I Sbjct: 60 VRIGGELILTGWVFAAPISYDGKQVTLKISGRSKTADLIDCSAINKPSQWKEVGVLKIVE 119 Query: 121 ALVKPYGITVVNEAGDRTMVKDHTVKPGETVFESLDRLLTLSRLLAMDDGRGRMVMVRPG 180 AL PYG++V++E + + + DHT++P ETVF+S+DRLLTL R+ + DD G +V+ RPG Sbjct: 120 ALAAPYGLSVISEIPETSKMADHTIEPAETVFKSIDRLLTLFRIFSTDDEYGNVVLARPG 179 Query: 181 SAGRAHDRLARGENILSGESDLDFSNVFSEYVAKGQQSGSDDDDDEENSAQVAASSVDTR 240 S G++ D L G+N+LS DFS +FSEY GQQ+G+D +E S++V+A D R Sbjct: 180 SRGQSADALELGKNVLSAVIARDFSGLFSEYRVIGQQTGNDQTFGKE-SSEVSAEVTDNR 238 Query: 241 ------VSRHRRLVIRESGQITKELAQWRADWERESRISRALEATYTVQGWYQSNGALWR 294 R R LV+ E IT +LA RA+WER R +AL TY VQGW QSNGALWR Sbjct: 239 HDDPAHKKRLRVLVVHEDAPITPKLALSRANWERGQRAGKALLTTYKVQGWRQSNGALWR 298 Query: 295 PNMVVRVVDQIIGF-DRDMLISEVSYKRSRSAGTTAVLKVAPPDGFEPEPNDKRKRMKLK 353 N +VRV+D +IGF R+MLIS V+Y S GT L V PP+GF+ EP D KR K++ Sbjct: 299 HNTMVRVIDPVIGFTSRNMLISAVTYSLS-DQGTITTLVVGPPEGFQAEPGDPNKRSKVQ 357 Query: 354 KSKDGFEYLLPADWERNS 371 ++D + +LLP D E S Sbjct: 358 VNQDAYSWLLPIDEETTS 375 >gb|EGH55323.1| bacteriophage Mu P [Pseudomonas syringae Cit 7] Length = 375 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 179/378 (47%), Positives = 241/378 (63%), Gaps = 10/378 (2%) Query: 1 MADREIVTLTVNGQDYAGWMDVDIGAGVLRLARDFTLTVTWDWPSNQGGDVRIRQGDRCG 60 M D +VTLTV+ DYAGW V+I AG+ R AR F +++TW WP + I G C Sbjct: 1 MIDPNVVTLTVDEHDYAGWKSVEISAGIERQARSFDVSITWQWPGTEISH-PITPGAACE 59 Query: 61 VSIDGELVLTGYVFGTPVRHDAKSLSLSIKGRSLTADLVDCCPDDKPGQWRNQTIENIAR 120 V I GEL+LTG+VF P+ +D K ++L I GRS TADL+DC ++P QW+ + I Sbjct: 60 VRIGGELILTGWVFAAPISYDGKQITLKISGRSKTADLIDCSAINRPSQWKEVGVLKIVE 119 Query: 121 ALVKPYGITVVNEAGDRTMVKDHTVKPGETVFESLDRLLTLSRLLAMDDGRGRMVMVRPG 180 AL PYG++V++E + + + DHT++P ETVF+S+DRLLTL R+ + DD G +V+ RPG Sbjct: 120 ALAAPYGLSVISEIPETSKMADHTIEPAETVFKSIDRLLTLFRIFSTDDEYGNVVLARPG 179 Query: 181 SAGRAHDRLARGENILSGESDLDFSNVFSEYVAKGQQSGSDDDDDEENSAQVAASSVDTR 240 S G++ D L G+N+LS DFS +FSEY GQQ+G+D +E S++V+A D R Sbjct: 180 SRGQSADALELGKNVLSAVITRDFSGLFSEYRVIGQQTGNDQTFGKE-SSEVSAEVTDNR 238 Query: 241 ------VSRHRRLVIRESGQITKELAQWRADWERESRISRALEATYTVQGWYQSNGALWR 294 R R LV+ E IT +LA RA+WER R +AL TY VQGW QSNGALWR Sbjct: 239 HDDPAHKKRLRVLVVHEDAPITPKLALSRANWERGQRAGKALLTTYKVQGWRQSNGALWR 298 Query: 295 PNMVVRVVDQIIGF-DRDMLISEVSYKRSRSAGTTAVLKVAPPDGFEPEPNDKRKRMKLK 353 N +VRV+D +IGF R+MLIS V+Y S GT L V PP+GF+ EP D KR K++ Sbjct: 299 HNTMVRVIDPVIGFTSRNMLISAVTYSLS-DQGTITTLVVGPPEGFQAEPGDPNKRSKVQ 357 Query: 354 KSKDGFEYLLPADWERNS 371 ++D + +LLP D E S Sbjct: 358 VNQDAYSWLLPIDEETTS 375