BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4022.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_609611.1| Mu-like phage protein gp46 [Pseudomonas entomop...   107   5e-22
ref|NP_745991.1| phage FluMu protein gp46 [Pseudomonas putida KT...   102   2e-20
ref|YP_346893.1| Phage FluMu protein gp46 [Pseudomonas fluoresce...    91   6e-17
ref|YP_004352292.1| bacteriophage protein; Phage FluMu protein g...    88   4e-16
gb|ACH86142.1| conserved bacteriophage protein [Pseudomonas phag...    88   5e-16

>ref|YP_609611.1| Mu-like phage protein gp46 [Pseudomonas entomophila L48]
 emb|CAK16827.1| putative Mu-like phage protein gp46 [Pseudomonas entomophila L48]
          Length = 132

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 75/121 (61%)

Query: 11  RAVLWRAAVISLFSWRRADPSDPNDGADPLGWWADSYPTVADDKIGSRVWLLQRRSITDD 70
           ++ L RA +ISLFSWRRA P DP D     GWW DS+P VADD+IGSR+WLLQR  +T+ 
Sbjct: 8   KSGLERAVLISLFSWRRAAPDDPLDDEQRHGWWGDSFPEVADDRIGSRLWLLQRVKLTEQ 67

Query: 71  ALRDAVAFGEEALAWLVSDGHASKVTVTVARTGTDGVTMNAVIDLLGDEPLQIEIDDFWR 130
             RDA  +  EAL WLV DGH   + V   R G   + ++  + L   E L+I + D W+
Sbjct: 68  TRRDAEFYAREALQWLVDDGHCRALEVRGERRGLQRLALHTTLVLADGERLEINLGDSWQ 127

Query: 131 V 131
           V
Sbjct: 128 V 128


>ref|NP_745991.1| phage FluMu protein gp46 [Pseudomonas putida KT2440]
 gb|AAN69455.1|AE016581_4 phage FluMu protein gp46 [Pseudomonas putida KT2440]
          Length = 128

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/126 (49%), Positives = 80/126 (63%)

Query: 10  RRAVLWRAAVISLFSWRRADPSDPNDGADPLGWWADSYPTVADDKIGSRVWLLQRRSITD 69
           R  +L RA  ISLFSWRRA   D  D AD  GWW D  P+ A D+IGSR+WLL RR++TD
Sbjct: 3   REPLLRRAVTISLFSWRRAASDDALDDADRQGWWGDCAPSEAGDQIGSRLWLLHRRALTD 62

Query: 70  DALRDAVAFGEEALAWLVSDGHASKVTVTVARTGTDGVTMNAVIDLLGDEPLQIEIDDFW 129
           D LRDA  + EEAL W++ D   + VTVT  R G D + +  ++  L  E L++  +D W
Sbjct: 63  DTLRDAREYAEEALRWMIDDEIVTTVTVTAERLGNDRLNLMVLLTELNGETLKLAFEDTW 122

Query: 130 RVINAV 135
            +INAV
Sbjct: 123 SLINAV 128


>ref|YP_346893.1| Phage FluMu protein gp46 [Pseudomonas fluorescens Pf0-1]
 gb|ABA72904.1| putative phage protein gp46 [Pseudomonas fluorescens Pf0-1]
          Length = 132

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/124 (45%), Positives = 74/124 (59%)

Query: 12  AVLWRAAVISLFSWRRADPSDPNDGADPLGWWADSYPTVADDKIGSRVWLLQRRSITDDA 71
           A L RA +ISLF+WRRA   D  D  +  GWW D++PTVADD+IGSR+WLL+R  +T   
Sbjct: 9   AALTRAVLISLFTWRRAADDDALDDEERFGWWGDTFPTVADDRIGSRLWLLRRVKLTRQT 68

Query: 72  LRDAVAFGEEALAWLVSDGHASKVTVTVARTGTDGVTMNAVIDLLGDEPLQIEIDDFWRV 131
             DA  +  EAL WL+ DGH S + +   R     + +  V+ L   E L I  D+ W+V
Sbjct: 69  QMDAEFYAREALQWLIDDGHCSAIDIISERLDAQRLNLRTVLTLADGERLDINPDNSWQV 128

Query: 132 INAV 135
           I AV
Sbjct: 129 IYAV 132


>ref|YP_004352292.1| bacteriophage protein; Phage FluMu protein gp46 [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gb|AEA67288.1| conserved bacteriophage protein; Putative Phage FluMu protein gp46
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 133

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/124 (43%), Positives = 73/124 (58%)

Query: 12  AVLWRAAVISLFSWRRADPSDPNDGADPLGWWADSYPTVADDKIGSRVWLLQRRSITDDA 71
           A L R+ +ISLF+WRRA   D  D  +  GWW D++PTVADD+IGSR+WLL+R  +T   
Sbjct: 10  AALTRSVLISLFTWRRAADDDAVDDEERFGWWGDTFPTVADDRIGSRLWLLRRVKLTRQT 69

Query: 72  LRDAVAFGEEALAWLVSDGHASKVTVTVARTGTDGVTMNAVIDLLGDEPLQIEIDDFWRV 131
             DA  +  EAL WL+ DGH S + +   R     + +  V+ L   E L I  D+ W+V
Sbjct: 70  QLDAEFYAREALQWLIDDGHCSAIDILSERLDAQRLNLRTVLTLADGERLDINPDNSWQV 129

Query: 132 INAV 135
             AV
Sbjct: 130 TYAV 133


>gb|ACH86142.1| conserved bacteriophage protein [Pseudomonas phage DVM-2008]
          Length = 132

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/124 (43%), Positives = 73/124 (58%)

Query: 12  AVLWRAAVISLFSWRRADPSDPNDGADPLGWWADSYPTVADDKIGSRVWLLQRRSITDDA 71
           A L R+ +ISLF+WRRA   D  D  +  GWW D++PTVADD+IGSR+WLL+R  +T   
Sbjct: 9   AALTRSVLISLFTWRRAADDDAVDDEERFGWWGDTFPTVADDRIGSRLWLLRRVKLTRQT 68

Query: 72  LRDAVAFGEEALAWLVSDGHASKVTVTVARTGTDGVTMNAVIDLLGDEPLQIEIDDFWRV 131
             DA  +  EAL WL+ DGH S + +   R     + +  V+ L   E L I  D+ W+V
Sbjct: 69  QLDAEFYAREALQWLIDDGHCSAIDILSERLDAQRLNLRTVLTLADGERLDINPDNSWQV 128

Query: 132 INAV 135
             AV
Sbjct: 129 TYAV 132