BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4019.p         (328 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_609608.1| Mu-like phage tail fiber protein [Pseudomonas e...    85   2e-14
ref|YP_004352297.1| phage tail collar protein [Pseudomonas brass...    81   2e-13
gb|EGH30354.1| tail fiber protein H [Pseudomonas syringae pv. ja...    78   2e-12
ref|YP_346898.1| hypothetical protein Pfl01_1166 [Pseudomonas fl...    78   2e-12
gb|EFW87953.1| tail fiber protein H, putative [Pseudomonas syrin...    78   2e-12

>ref|YP_609608.1| Mu-like phage tail fiber protein [Pseudomonas entomophila L48]
 emb|CAK16824.1| putative Mu-like phage tail fiber protein [Pseudomonas
          entomophila L48]
          Length = 428

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 56/74 (75%)

Query: 1  MDFPKSVSGVGLVNGKFVDEDEQTGQQGSLIPAAWGNLTTDELLAVIIEAGLVPSEIVSN 60
          +D+PKSV  VGLVNGKFVDE+  TG  GSLIPA+WGN  T+EL+  I  AG+VP+E  ++
Sbjct: 24 VDYPKSVPSVGLVNGKFVDENPATGMPGSLIPASWGNAVTEELVNAIQAAGIVPAENRND 83

Query: 61 QLLLAIKKLVGRAP 74
          QL+LAI++L    P
Sbjct: 84 QLVLAIRQLAKLDP 97


>ref|YP_004352297.1| phage tail collar protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
 gb|ACH86147.1| tail collar protein [Pseudomonas phage DVM-2008]
 gb|AEA67293.1| Putative phage tail collar protein [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
          Length = 364

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 51/71 (71%)

Query: 1  MDFPKSVSGVGLVNGKFVDEDEQTGQQGSLIPAAWGNLTTDELLAVIIEAGLVPSEIVSN 60
          MD+PKSV  VGLVNG+FVDE+   G  GSLIPA WGN  T E+L VI  A + PSE  +N
Sbjct: 1  MDYPKSVPSVGLVNGRFVDENPVEGTPGSLIPAVWGNSVTQEILGVIAGADMAPSEADTN 60

Query: 61 QLLLAIKKLVG 71
          QL  A++K++G
Sbjct: 61 QLFKAVQKIIG 71


>gb|EGH30354.1| tail fiber protein H [Pseudomonas syringae pv. japonica str.
          M301072PT]
          Length = 619

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/92 (55%), Positives = 59/92 (64%), Gaps = 9/92 (9%)

Query: 1  MDFPKSVSGVGLVNGKFVDEDEQTGQQGSLIPAAWGNLTTDELLAVIIEAGLVPSEIVSN 60
          MD+PKSV GVGL +GKFVDE+  TG  GSLIPA WGN  T E+L VI+ AGLVP+E    
Sbjct: 1  MDYPKSVPGVGLASGKFVDENPATGTPGSLIPAQWGNSVTQEILNVILGAGLVPNEEDVT 60

Query: 61 QLLLAI--------KKLVGRAPAVS-GVRGLR 83
          QL  AI        KK V  A  VS G+ GL+
Sbjct: 61 QLHRAILGLAASDYKKSVRCATTVSIGLSGLQ 92


>ref|YP_346898.1| hypothetical protein Pfl01_1166 [Pseudomonas fluorescens Pf0-1]
 gb|ABA72909.1| putative phage-related tail fiber protein [Pseudomonas
          fluorescens Pf0-1]
          Length = 364

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 53/79 (67%)

Query: 1  MDFPKSVSGVGLVNGKFVDEDEQTGQQGSLIPAAWGNLTTDELLAVIIEAGLVPSEIVSN 60
          MD+PKSV  VGLV+G+FVDE+   G  GSLIPA WGN  T E+L VI  AGL  +E  + 
Sbjct: 1  MDYPKSVPSVGLVDGRFVDENPVAGTPGSLIPAVWGNSVTQEILNVITGAGLTAAEADTG 60

Query: 61 QLLLAIKKLVGRAPAVSGV 79
          QLL AI+ +VG A  +  V
Sbjct: 61 QLLRAIQSIVGNASPMRSV 79


>gb|EFW87953.1| tail fiber protein H, putative [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 625

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 48/66 (72%)

Query: 1  MDFPKSVSGVGLVNGKFVDEDEQTGQQGSLIPAAWGNLTTDELLAVIIEAGLVPSEIVSN 60
          MD+PKSV GVGL +GKFVDE+  TG  GSLIPA WGN  T E+L VI+ AGLVP+E    
Sbjct: 1  MDYPKSVPGVGLASGKFVDENPATGTPGSLIPAQWGNSVTQEILNVILGAGLVPNEEDVT 60

Query: 61 QLLLAI 66
          QL  AI
Sbjct: 61 QLHRAI 66