BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4012.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03543681.1| D12 class N6 adenine-specific DNA methyltrans...   132   1e-29
ref|YP_004124750.1| d12 class n6 adenine-specific DNA methyltran...   132   1e-29
ref|YP_971240.1| D12 class N6 adenine-specific DNA methyltransfe...   132   2e-29
ref|ZP_02480751.1| DNA adenine methylase [Burkholderia pseudomal...   127   4e-28
ref|ZP_06841945.1| D12 class N6 adenine-specific DNA methyltrans...   127   4e-28

>ref|ZP_03543681.1| D12 class N6 adenine-specific DNA methyltransferase [Comamonas
           testosteroni KF-1]
 gb|EED67967.1| D12 class N6 adenine-specific DNA methyltransferase [Comamonas
           testosteroni KF-1]
          Length = 263

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 71/89 (79%)

Query: 1   MDPPYLETEGYGVHFPVSEYEKMASMMRSLQGKAIVSINDHPSIREIFSGFQLEELSVDY 60
           MDPPY ETEGYGV FP  +YE MA  +++++GKA++SINDHP+IRE F  F++E L +DY
Sbjct: 175 MDPPYWETEGYGVPFPWEQYELMAKKLKTIKGKAVISINDHPAIRECFKDFEMEALKLDY 234

Query: 61  TVGGGGKAARRGELLIYSWDRQAEPAGLF 89
           TVGGG     RGEL+IYSW+R AEPAGLF
Sbjct: 235 TVGGGANRVERGELVIYSWNRAAEPAGLF 263


>ref|YP_004124750.1| d12 class n6 adenine-specific DNA methyltransferase [Alicycliphilus
           denitrificans BC]
 gb|ADU97862.1| D12 class N6 adenine-specific DNA methyltransferase [Alicycliphilus
           denitrificans BC]
          Length = 263

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 72/89 (80%)

Query: 1   MDPPYLETEGYGVHFPVSEYEKMASMMRSLQGKAIVSINDHPSIREIFSGFQLEELSVDY 60
           +DPPY ETEGYGV FP  +Y  MA+ +++++GKA+VSINDHP+IRE F+G+ +E L +DY
Sbjct: 175 LDPPYWETEGYGVPFPWEQYVAMAAKLKAIKGKAVVSINDHPAIRECFAGYDMEALKLDY 234

Query: 61  TVGGGGKAARRGELLIYSWDRQAEPAGLF 89
           TVGGG     RGEL+IYSWDR AEPAGLF
Sbjct: 235 TVGGGANRVERGELVIYSWDRLAEPAGLF 263


>ref|YP_971240.1| D12 class N6 adenine-specific DNA methyltransferase [Acidovorax
           citrulli AAC00-1]
 ref|YP_972423.1| D12 class N6 adenine-specific DNA methyltransferase [Acidovorax
           citrulli AAC00-1]
 gb|ABM33466.1| D12 class N6 adenine-specific DNA methyltransferase [Acidovorax
           citrulli AAC00-1]
 gb|ABM34649.1| D12 class N6 adenine-specific DNA methyltransferase [Acidovorax
           citrulli AAC00-1]
          Length = 263

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 74/89 (83%)

Query: 1   MDPPYLETEGYGVHFPVSEYEKMASMMRSLQGKAIVSINDHPSIREIFSGFQLEELSVDY 60
           +DPPY ETEGYGV F  ++YE MA+ ++++QGKAIVSINDHP+IRE F+G+ +E L++DY
Sbjct: 175 LDPPYWETEGYGVPFEWAQYELMAAKLKAIQGKAIVSINDHPAIRECFAGYAMEALTLDY 234

Query: 61  TVGGGGKAARRGELLIYSWDRQAEPAGLF 89
           TVGGG     RGEL+IY+WD QAEPAGLF
Sbjct: 235 TVGGGANRVERGELVIYNWDYQAEPAGLF 263


>ref|ZP_02480751.1| DNA adenine methylase [Burkholderia pseudomallei 7894]
          Length = 262

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 1   MDPPYLETEGYGVHFPVSEYEKMASMMRSLQGKAIVSINDHPSIREIFSGFQLEELSVDY 60
           +DPPY ETEGYGV FP +EYEKMA  +RS++G+AIVS+NDHP IR +F+GF +E + + Y
Sbjct: 175 LDPPYFETEGYGVAFPFAEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQY 234

Query: 61  TVGGGGKAARRGELLIYSWDRQAEPAGLF 89
           TV GGGK   R EL+I+SWD  A+PAGLF
Sbjct: 235 TV-GGGKGVERRELIIFSWDDSADPAGLF 262


>ref|ZP_06841945.1| D12 class N6 adenine-specific DNA methyltransferase [Burkholderia
           sp. Ch1-1]
 gb|EFG70470.1| D12 class N6 adenine-specific DNA methyltransferase [Burkholderia
           sp. Ch1-1]
          Length = 263

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 71/89 (79%)

Query: 1   MDPPYLETEGYGVHFPVSEYEKMASMMRSLQGKAIVSINDHPSIREIFSGFQLEELSVDY 60
           +DPPY ETEGYGV FP +EY +MA+ +R+L+GKAIVS+NDHP IR  F GF +E + + Y
Sbjct: 175 LDPPYWETEGYGVPFPYAEYVEMAARLRALKGKAIVSLNDHPDIRRAFDGFHIEAVDIKY 234

Query: 61  TVGGGGKAARRGELLIYSWDRQAEPAGLF 89
           TVGGGG+ A R E++I+SWD  A+PAGLF
Sbjct: 235 TVGGGGREAARKEVIIFSWDDAAQPAGLF 263