BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4007.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004846900.1| hypothetical protein NH8B_1669 [Pseudogulben... 196 2e-48 ref|NP_902096.1| hypothetical protein CV_2426 [Chromobacterium v... 194 7e-48 ref|YP_004029537.1| ATP synthase protein I [Burkholderia rhizoxi... 191 4e-47 ref|YP_145706.1| hypothetical protein pMOL30_174 [Ralstonia meta... 187 1e-45 ref|YP_560758.1| hypothetical protein Bxe_A0226 [Burkholderia xe... 176 2e-42 >ref|YP_004846900.1| hypothetical protein NH8B_1669 [Pseudogulbenkiania sp. NH8B] ref|YP_004847329.1| hypothetical protein NH8B_2100 [Pseudogulbenkiania sp. NH8B] dbj|BAK76486.1| protein of unknown function [Pseudogulbenkiania sp. NH8B] dbj|BAK76915.1| protein of unknown function [Pseudogulbenkiania sp. NH8B] Length = 241 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 96/184 (52%), Positives = 126/184 (68%), Gaps = 4/184 (2%) Query: 27 WKEQIWQDYPAPIIRAGQNGGMELVLGSYGMIPKDKVPAGFQLTTMNARAETVGEKRSYS 86 W ++WQDY APII G +L +YG +PK +P G +L+TMNARAET+G+ R+Y+ Sbjct: 44 WPLEVWQDYIAPII-IDNGSGPHALLANYGFVPKRHMPLGIRLSTMNARAETIGQLRTYN 102 Query: 87 GAWRAAQTCLVPMMGFYEPNWESGKAERWEIGMADGAPFFVAGLWRDW---DDGLRTSFT 143 +W A + CLVPM F+EP +ESGKAERW IG+A G PF VAG+WR W D + +F+ Sbjct: 103 QSWHAGRRCLVPMQFFFEPCYESGKAERWRIGLASGQPFAVAGIWRAWPEEDGSISHAFS 162 Query: 144 QLTISADGHPLMSRFHRPTHEKRSLVIIPREQAEDWLNVGNPEIARAYLQLYRADLMLGR 203 Q+TI+AD HPLM R H+P EKR+LVII E +DWL +PEIAR+ L Y A+ ML Sbjct: 163 QVTINADDHPLMRRMHKPGDEKRNLVIIEPEHYQDWLACRDPEIARSCLTNYPAEQMLAE 222 Query: 204 PATR 207 PA + Sbjct: 223 PAPK 226 >ref|NP_902096.1| hypothetical protein CV_2426 [Chromobacterium violaceum ATCC 12472] gb|AAQ60098.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 214 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 108/204 (52%), Positives = 130/204 (63%), Gaps = 11/204 (5%) Query: 1 MCVSYRATDAEVLEAITGLSTAGMAPWKEQIWQDYPAPII-RAGQNGGMELVLGSYGMIP 59 MCV++ L G G W ++ WQDYPAPI+ R G L SYG IP Sbjct: 1 MCVNFIPPSRGQLREWLGCD-PGDGQWPDEAWQDYPAPILTRDG------LRFASYGFIP 53 Query: 60 KDKVPAGFQLTTMNARAETVGEKRSYSGAWRAAQTCLVPMMGFYEPNWESGKAERWEIGM 119 K PAG +L+TMNAR ET+G+ RSY AWR Q CLVPM FYEP +ESG+A R +I M Sbjct: 54 KRHQPAGVRLSTMNARVETIGQLRSYRDAWRNCQLCLVPMQAFYEPCYESGRAVRTKISM 113 Query: 120 ADGAPFFVAGLWRDW---DDGLRTSFTQLTISADGHPLMSRFHRPTHEKRSLVIIPREQA 176 ADGAPF VAGLWR+W D + +FTQ+TI ADGH +M R HRP EKRSL IIP Sbjct: 114 ADGAPFAVAGLWREWREADGSISLAFTQITIHADGHAVMGRMHRPGDEKRSLAIIPAALY 173 Query: 177 EDWLNVGNPEIARAYLQLYRADLM 200 + WL+ NPE ARA+LQL+ A+ M Sbjct: 174 QAWLHCRNPEQARAFLQLFSAEAM 197 >ref|YP_004029537.1| ATP synthase protein I [Burkholderia rhizoxinica HKI 454] emb|CBW75393.1| ATP synthase protein I [Burkholderia rhizoxinica HKI 454] Length = 238 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 129/206 (62%), Gaps = 5/206 (2%) Query: 1 MCVSYRATDAEVLEAITGLSTAGMAPWKEQIWQDYPAPIIRAGQNGGMELVLGSYGMIPK 60 +C +Y + + L T + +++DY API R G+ G ++G++P+ Sbjct: 25 VCTNYESATLDDLSTFTEFPRPTF-DYPRSVYKDYAAPIFRMGE-GTRSTDRATFGLVPR 82 Query: 61 DKVPAGFQL-TTMNARAETVGEKRSYSGAWRAAQTCLVPMMGFYEPNWESGKAERWEIGM 119 +P G ++ TMNARAETVGEKRS+S WR Q CL+P FYEPN+E+GKA RW I + Sbjct: 83 KHIPPGVKVFDTMNARAETVGEKRSFSTCWRNGQLCLIPASSFYEPNYETGKAVRWRIKL 142 Query: 120 ADGAPFFVAGLWRDWDDGLRTSFTQLTISADGHPLMSRFHRPTHEKRSLVIIPREQAEDW 179 A G PF +AGLWR W+D L SFT LT++AD HPL+ RFH P EKR +VI+ RE +DW Sbjct: 143 ASGEPFSIAGLWRAWNDSL--SFTMLTLNADSHPLLRRFHEPGSEKRGIVILRREYYDDW 200 Query: 180 LNVGNPEIARAYLQLYRADLMLGRPA 205 L PE+AR +L L AD ++ PA Sbjct: 201 LTCREPEVARTFLSLLPADELVAGPA 226 >ref|YP_145706.1| hypothetical protein pMOL30_174 [Ralstonia metallidurans CH34] ref|YP_581875.1| hypothetical protein Rmet_6066 [Cupriavidus metallidurans CH34] emb|CAI11355.1| hypothetical protein [Cupriavidus metallidurans CH34] gb|ABF12925.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 100/219 (45%), Positives = 135/219 (61%), Gaps = 16/219 (7%) Query: 1 MCVSYRATDAEVLEAITGLSTAGMAPWKEQIWQDYPAPIIRAGQNGGMELVLGSYGMIPK 60 MCV+Y +VL + G+ W+ + W+DYPAPIIRAG +G E VL +GM+PK Sbjct: 1 MCVNYAPVQRQVLRDVFGVEPPS-DEWRAEAWRDYPAPIIRAGDHGQRECVLAGFGMVPK 59 Query: 61 DKV--------------PAGFQLTTMNARAETVGEKRSYSGAWRAAQTCLVPMMGFYEPN 106 ++ P TMNAR ET+G+ +S++ WR + LV YEP Sbjct: 60 AEIKRRNEETMQRTGAPPKVRDYDTMNARLETIGKLQSFAKYWRECRLALVGATAVYEPC 119 Query: 107 WESGKAERWEIGMADGAPFFVAGLWRDWDDGLRTSFTQLTISADGHPLMSRFHRPTHEKR 166 WE+GKA RW IG+ DG PF +AGLWRDW DG T FT T++A+ H LM R H P EKR Sbjct: 120 WETGKAVRWRIGLPDGEPFAIAGLWRDWPDGSAT-FTMPTVAAETHALMRRMHAPGKEKR 178 Query: 167 SLVIIPREQAEDWLNVGNPEIARAYLQLYRADLMLGRPA 205 S+VI+PR++ +DWLN +PE+AR++L+LY AD M+ A Sbjct: 179 SVVILPRDEWDDWLNCRDPELARSFLRLYPADAMVAEAA 217 >ref|YP_560758.1| hypothetical protein Bxe_A0226 [Burkholderia xenovorans LB400] gb|ABE32706.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 88/208 (42%), Positives = 133/208 (63%), Gaps = 6/208 (2%) Query: 1 MCVSYRATDAEVLEAITGLSTAGMAPWKEQIWQDYPAPIIRAGQNGGMELVLGSYGMIPK 60 MC SY A + + + ++ +I++DY API++ + V S+G++P+ Sbjct: 1 MCTSYEANPNDAWDVFSLFPVPDFE-YRPEIYKDYYAPILQRNADE-FATVPASFGIVPR 58 Query: 61 DKVPAGFQL-TTMNARAETVGEKRSYSGAWRAAQTCLVPMMGFYEPNWESGKAERWEIGM 119 +P G ++ TMNAR+E+VG+KRS+SGAW+ Q CL+P F+EPN+E+GK RW+IGM Sbjct: 59 RHIPPGVKVFDTMNARSESVGDKRSFSGAWKNLQLCLIPCRAFFEPNYETGKPIRWKIGM 118 Query: 120 ADGAPFFVAGLWRDWD--DGLRT-SFTQLTISADGHPLMSRFHRPTHEKRSLVIIPREQA 176 A+G +AGLWR W DG +T +FT LT+++D HPLM RFH+P EKRS+VI+P + Sbjct: 119 ANGGALAIAGLWRSWKEVDGSQTLAFTMLTVNSDEHPLMKRFHKPGDEKRSVVIVPPTEY 178 Query: 177 EDWLNVGNPEIARAYLQLYRADLMLGRP 204 DWL+ + AR++L L+ + M P Sbjct: 179 SDWLSCKTTDEARSFLNLFPVEAMHAEP 206