BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4005.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08492539.1| hypothetical protein MicvaDRAFT_3164 [Microco...    98   4e-19
ref|YP_003137638.1| hypothetical protein Cyan8802_1910 [Cyanothe...    96   2e-18
ref|ZP_08469902.1| hypothetical protein HMPREF9456_01497 [Dysgon...    74   5e-12
ref|ZP_08472566.1| hypothetical protein HMPREF9455_00732 [Dysgon...    73   1e-11
ref|NP_742800.1| hypothetical protein PP_0639 [Pseudomonas putid...    71   4e-11

>ref|ZP_08492539.1| hypothetical protein MicvaDRAFT_3164 [Microcoleus vaginatus FGP-2]
 gb|EGK88070.1| hypothetical protein MicvaDRAFT_3164 [Microcoleus vaginatus FGP-2]
          Length = 237

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 6/135 (4%)

Query: 3   KKIAVFVEGQTEQIFLIELLKALAGRKNITFE--RMEQHRGELVSTEVILSGGLD-DFYF 59
           KKIA FVEGQTEQIF+  L + +AG K I+ E  + +  +   +   + LS   D  F+ 
Sbjct: 4   KKIACFVEGQTEQIFVERLFQEIAGYKKISIETYKFQGSKDNRIIQSLKLSKVQDAPFFV 63

Query: 60  LIVSCNSDSQVNSQIKRRHKALTDSGYAHIVGLRDIYPSPLSELPLFEEHK---LAGIPR 116
           L+ +C  DSQV S I++RH++LT+SGY  I+GLRD+YP PL +    E+     L  + +
Sbjct: 64  LLYNCGCDSQVLSDIRKRHESLTNSGYEKILGLRDLYPDPLEKKQEIEKGIRGCLKPLQK 123

Query: 117 EGAPVDIVLAVLETE 131
           +G P+ + LAV+E E
Sbjct: 124 KGIPISMNLAVMEIE 138


>ref|YP_003137638.1| hypothetical protein Cyan8802_1910 [Cyanothece sp. PCC 8802]
 gb|ACV00803.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
          Length = 236

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 82/137 (59%), Gaps = 10/137 (7%)

Query: 3   KKIAVFVEGQTEQIFLIELLKALAGRKNIT-----FERMEQHRGELVSTEVILSGGLDDF 57
           KKIA+FVEGQTEQIF+ +LLK +AGRKNI+     F+  +  R   +  ++ +      F
Sbjct: 4   KKIAIFVEGQTEQIFVAKLLKEIAGRKNISIKIYKFQGTKSRRKPHLLEDINIKN--PRF 61

Query: 58  YFLIVSCNSDSQVNSQIKRRHKALTDSGYAHIVGLRDIYPSPLSELPLFEEHK---LAGI 114
           + L+  CN +S V S IK +H+ LT + Y  I+G+RD+YP  L +    E      +  +
Sbjct: 62  FALLYDCNCESHVLSDIKNQHQNLTQNNYTKIIGVRDLYPKSLDDKQKIENGMKGFIKPL 121

Query: 115 PREGAPVDIVLAVLETE 131
            + G P+D++LA++E E
Sbjct: 122 NKTGIPIDMILAIMEVE 138


>ref|ZP_08469902.1| hypothetical protein HMPREF9456_01497 [Dysgonomonas mossii DSM
           22836]
 gb|EGK03430.1| hypothetical protein HMPREF9456_01497 [Dysgonomonas mossii DSM
           22836]
          Length = 238

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 9/137 (6%)

Query: 3   KKIAVFVEGQTEQIFLIELLKALAGRKNITFERMEQHRGELVSTEVILSGGL----DDFY 58
           ++IA FVEGQTEQIF+  L+K + G K I   + +   G  +  + I+   L      + 
Sbjct: 2   RRIAFFVEGQTEQIFINRLIKEVFGYKQINIIQKQFRGGSNIPKQEIVRNSLFSRNPKYE 61

Query: 59  FLIVSCNSDSQVNSQIKRRHKALTDSGYAHIVGLRDIYPSPLSELPLFEEHKLAGIP--- 115
            LI  C SD++V S+I      L   GY  I+G+RD+YP P+ +L   E+  L  +P   
Sbjct: 62  VLIFDCGSDNRVKSEILDNISNLRQRGYEMIIGVRDLYPIPIDDLEKLEK-GLRFLPNKL 120

Query: 116 REGAP-VDIVLAVLETE 131
           R  AP  DIV+A+ E E
Sbjct: 121 RADAPYFDIVIAIHEIE 137


>ref|ZP_08472566.1| hypothetical protein HMPREF9455_00732 [Dysgonomonas gadei ATCC
           BAA-286]
 gb|EGK03162.1| hypothetical protein HMPREF9455_00732 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 237

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 11/138 (7%)

Query: 3   KKIAVFVEGQTEQIFLIELLKALAGRKNITFERMEQHRG--ELVSTEVILSGGLD---DF 57
           K+IA FVEGQTEQIF+  L+K + G + I   + +Q RG   +   E++ +        +
Sbjct: 2   KRIAFFVEGQTEQIFVNRLIKEILGTQQINIIQ-KQFRGGVNIPKVEIVRNSSFSRNPKY 60

Query: 58  YFLIVSCNSDSQVNSQIKRRHKALTDSGYAHIVGLRDIYPSPLSELPLFEEHKLAGIP-- 115
             LI  C SD++V S+I    + L  +GY  I+GLRD+YP P+ +L   E+  L  +P  
Sbjct: 61  EVLIFDCGSDNRVKSEILDNMETLRKNGYEMIIGLRDLYPLPIDDLEKLEK-GLRFLPNK 119

Query: 116 --REGAPVDIVLAVLETE 131
              +    D+++AV E E
Sbjct: 120 LKNDAHYFDVIIAVHEIE 137


>ref|NP_742800.1| hypothetical protein PP_0639 [Pseudomonas putida KT2440]
 gb|AAN66264.1|AE016255_1 hypothetical protein PP_0639 [Pseudomonas putida KT2440]
          Length = 238

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 3   KKIAVFVEGQTEQIFLIELLKALAGRKNITFERMEQHRGELVSTEVILSGGLDD----FY 58
           KK+A+FVEG TE  F+  L++ +AG   + F   +QH G L    ++ + G  +      
Sbjct: 2   KKVAIFVEGYTEFYFIERLIEEIAGWGQVRFHLAQQHAGML---NILKTTGAPEEVAILT 58

Query: 59  FLIVSCNSDSQVNSQIKRRHKALTDSGYAHIVGLRDIYPSPLSELPLFEEHKLAGIPREG 118
            ++V+C  D  V S I  R   L   GY +++GL+D+YP  L  L  F+     G+    
Sbjct: 59  IMLVNCCGDGSVKSFILERKSRLIQQGYTYVLGLQDLYPKTLENLEKFKTGISTGLEDPD 118

Query: 119 APVDIVLAVLETE 131
             ++I +AV E E
Sbjct: 119 IKIEICIAVAEVE 131