BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4004.p         (211 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003137637.1| hypothetical protein Cyan8802_1909 [Cyanothe...    78   8e-13
ref|ZP_08492538.1| hypothetical protein MicvaDRAFT_3163 [Microco...    73   3e-11

>ref|YP_003137637.1| hypothetical protein Cyan8802_1909 [Cyanothece sp. PCC 8802]
 gb|ACV00802.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
          Length = 393

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 5   DGVEYIYQVSQRDGVIEREQLTENGEAKLSRNADGSGQIYYESEQKSLPFSYEVKEFAIQ 64
           + ++Y+ ++   +G++  EQL  + +  L+R+  G G I+ E   + + F     E A+ 
Sbjct: 79  NNIQYLLKI--ENGLVVEEQLIISNKNLLNRDQSGEGHIWAEELNREMRFQSPQTELAVV 136

Query: 65  QRNDQLQHPFVRLLWQWASMARLYLFGSDFDRNHYLTVDQVRSLVEGTNKTLKKRQQNPI 124
           +R D +QHPF+  ++QWA+  R Y FG+   +N    +     L++   KT  K  +  I
Sbjct: 137 KRRDTIQHPFLEDIYQWANSLRFYQFGTQLGKNTIAHIPPTIELLK--RKTDLKDDEYVI 194

Query: 125 SSYIAAFSLYGVAYDEAIINSMAQFGFEIDEVGTELNPIALEMSAVSLFVKEKGIPGKIF 184
           S ++   + +   +   II  M + G++I EVG ++ P   E+S +S   ++   P  ++
Sbjct: 195 SIFLLGKNEFQDNFSNKIIKDMGEIGYKISEVGVKI-PSMFELSDISPTDEDNSFPQFLY 253

Query: 185 FLE 187
             E
Sbjct: 254 VKE 256


>ref|ZP_08492538.1| hypothetical protein MicvaDRAFT_3163 [Microcoleus vaginatus FGP-2]
 gb|EGK88069.1| hypothetical protein MicvaDRAFT_3163 [Microcoleus vaginatus FGP-2]
          Length = 398

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 8   EYIYQVSQRDGVIEREQL---TENGEAKLSRNADGSGQIYYESEQKSLPFSYEVKEFAIQ 64
           EYI ++ +  G++ +E+L   + + E  L R+  G G I+ +  ++++ F  +  E A+ 
Sbjct: 82  EYILKIEK--GLVIKEKLIIGSGSDEPLLDRDESGKGSIFAKELEQNIRFQTDQTELAVV 139

Query: 65  QRNDQLQHPFVRLLWQWASMARLYLFGSDFDRNHYLTVDQVRSLVEGTNKTLKKRQQNPI 124
           +R D +QHPF+  L+QW++  R Y FG    +N    +     L++  NKT  K     +
Sbjct: 140 KRRDSIQHPFLENLYQWSNSLRFYEFGEQLGKNTMARIPSTMELLK--NKTDFKDSDFVV 197

Query: 125 SSYIAAFSLYGVAYDEAIINSMAQFGFEIDEVGTEL 160
             ++      G  + +AI++ M + G+++ ++GT++
Sbjct: 198 GIFVIGKQEIGEPFIKAILSDMREIGYKLSDIGTKV 233