BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4003.p (523 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776658.1| multidrug resistance protein protein [Herbas... 861 0.0 ref|YP_004752315.1| inner membrane component of tripartite multi... 751 0.0 ref|YP_003910794.1| drug resistance transporter EmrB/QacA subfam... 664 0.0 ref|ZP_05876992.1| inner membrane component of tripartite multid... 608 e-172 ref|ZP_05925152.1| inner membrane component of tripartite multid... 608 e-172 >ref|YP_003776658.1| multidrug resistance protein protein [Herbaspirillum seropedicae SmR1] gb|ADJ64750.1| multidrug resistance protein protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 482/500 (96%), Positives = 494/500 (98%) Query: 24 LSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAITV 83 LSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAITV Sbjct: 26 LSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAITV 85 Query: 84 PLTGWLANRFGTVRVFILSMVMFGLFSALCGLANSLGMLIAFRVMQGLAGGPLMPLSQTL 143 PLTGWLANRFGTVRVFILSMVMFGLFSALCG+ANSLGMLIAFRV+QGLAGGPLMPLSQTL Sbjct: 86 PLTGWLANRFGTVRVFILSMVMFGLFSALCGMANSLGMLIAFRVLQGLAGGPLMPLSQTL 145 Query: 144 LLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSWPYIFWINVPVALICGYLGW 203 LLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSWPYIFWINVPVALICGY+GW Sbjct: 146 LLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSWPYIFWINVPVALICGYIGW 205 Query: 204 RMLKRFETKTSKLPIDRVGLILMVVWVAALQLMLDEGKEKDWFASTEIVLLAVTAVVFFI 263 RMLKR+ETK SKLPIDRVGL+LMVVWVAALQLMLDEGKEKDWFASTEIVLLAVTAVVFFI Sbjct: 206 RMLKRYETKMSKLPIDRVGLVLMVVWVAALQLMLDEGKEKDWFASTEIVLLAVTAVVFFI 265 Query: 264 AFLIWELTEHNPIVDLRVFRHRGFTASVTTICLAFGAFFGSVVLTPLWLQGYMGYTATWS 323 AFLIWELTE NPIVDLRVFRHRGFTASVTTICLAFGAFFGSVVLTPLWLQGYMGYTATWS Sbjct: 266 AFLIWELTERNPIVDLRVFRHRGFTASVTTICLAFGAFFGSVVLTPLWLQGYMGYTATWS 325 Query: 324 GCISALTGILAVLTAPMVAKMSTTVDARKLVCIGVTWLGFITFLRAFNNTDMSFFQIGWP 383 GCISALTGILAV+TAPMVAKMSTT+DARKLVCIGVTWLGFITFLRAFN TDMSFFQIGWP Sbjct: 326 GCISALTGILAVMTAPMVAKMSTTIDARKLVCIGVTWLGFITFLRAFNTTDMSFFQIGWP 385 Query: 384 LFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDATY 443 LFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDATY Sbjct: 386 LFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDATY 445 Query: 444 FHAELSGLVDRSGDAVNAMMASGMSAEQATGSLAQTVQNQAVMLATNHIFMMAAVSFSLA 503 FHAELSGLVDR GDA++ MMASGMSAEQAT SLAQTVQNQAVML+TNHIFMMAAVSFSLA Sbjct: 446 FHAELSGLVDRGGDAIHTMMASGMSAEQATASLAQTVQNQAVMLSTNHIFMMAAVSFSLA 505 Query: 504 ALAVWLAPKPTRVADTTSAH 523 ALAVWLAPKPTRVADT++AH Sbjct: 506 ALAVWLAPKPTRVADTSAAH 525 >ref|YP_004752315.1| inner membrane component of tripartite multidrug resistance system [Collimonas fungivorans Ter331] gb|AEK61492.1| Inner membrane component of tripartite multidrug resistance system [Collimonas fungivorans Ter331] Length = 512 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 403/501 (80%), Positives = 458/501 (91%) Query: 23 PLSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAIT 82 PL+G QL+GAG+LLAAANFIAVLDTTIANVSVSTI+GALGAS+SQGTYVITSYAVAEAIT Sbjct: 12 PLAGAQLIGAGLLLAAANFIAVLDTTIANVSVSTISGALGASSSQGTYVITSYAVAEAIT 71 Query: 83 VPLTGWLANRFGTVRVFILSMVMFGLFSALCGLANSLGMLIAFRVMQGLAGGPLMPLSQT 142 VPLTGWLANRFG VRVFI SMVMFG+FSALCGLANSLG+LIAFR+ QGLAGGPL+PLSQT Sbjct: 72 VPLTGWLANRFGAVRVFITSMVMFGVFSALCGLANSLGLLIAFRIFQGLAGGPLIPLSQT 131 Query: 143 LLLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSWPYIFWINVPVALICGYLG 202 LLLR+FPKEKAP AVGLWAMTTL+APIAGPILGGVLCDQYSWPYIF+INVPVALICGYLG Sbjct: 132 LLLRVFPKEKAPTAVGLWAMTTLIAPIAGPILGGVLCDQYSWPYIFYINVPVALICGYLG 191 Query: 203 WRMLKRFETKTSKLPIDRVGLILMVVWVAALQLMLDEGKEKDWFASTEIVLLAVTAVVFF 262 W+M KR+E+ K+PID+VG+ LM+VWVAALQLMLD+GKEKDWFAS EI+ LA+ A + F Sbjct: 192 WKMFKRYESSLVKVPIDKVGMGLMIVWVAALQLMLDQGKEKDWFASPEIMALALVATIGF 251 Query: 263 IAFLIWELTEHNPIVDLRVFRHRGFTASVTTICLAFGAFFGSVVLTPLWLQGYMGYTATW 322 IAFLIWELTE NP+VDLRVFRHRG++ASV TICLAFGAFFG+ VLTPLWLQGYMGYTAT Sbjct: 252 IAFLIWELTERNPVVDLRVFRHRGYSASVITICLAFGAFFGATVLTPLWLQGYMGYTATH 311 Query: 323 SGCISALTGILAVLTAPMVAKMSTTVDARKLVCIGVTWLGFITFLRAFNNTDMSFFQIGW 382 SG +AL+GILAV+TAP VAK+ST VD RKLVC+GV WLG +T LR+FN+TDM+ FQIGW Sbjct: 312 SGQTTALSGILAVMTAPFVAKLSTKVDPRKLVCLGVLWLGSVTLLRSFNSTDMTTFQIGW 371 Query: 383 PLFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDAT 442 PL LQGIG+PLFFVPLTGLALSSVN ETASAAGLMSFCRTM+GAIATS+VNTSWEN A Sbjct: 372 PLLLQGIGMPLFFVPLTGLALSSVNFSETASAAGLMSFCRTMSGAIATSLVNTSWENKAI 431 Query: 443 YFHAELSGLVDRSGDAVNAMMASGMSAEQATGSLAQTVQNQAVMLATNHIFMMAAVSFSL 502 Y+HAELSGLVD++G+A N ++ SG+SAEQA S+ QTVQ+Q++ML+TNHIFMMAA+SF L Sbjct: 432 YYHAELSGLVDQAGNASNTLVQSGLSAEQARLSIEQTVQSQSIMLSTNHIFMMAALSFLL 491 Query: 503 AALAVWLAPKPTRVADTTSAH 523 AA AVW APKP R+ADT++AH Sbjct: 492 AATAVWFAPKPKRIADTSAAH 512 >ref|YP_003910794.1| drug resistance transporter EmrB/QacA subfamily [Burkholderia sp. CCGE1003] gb|ADN61503.1| drug resistance transporter, EmrB/QacA subfamily [Burkholderia sp. CCGE1003] Length = 513 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 368/519 (70%), Positives = 427/519 (82%), Gaps = 7/519 (1%) Query: 5 TSAAAGDLPAPQPGPLEAPLSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGAS 64 +S+ D+P P PLSGG L+GA +LLAAANF+AVLDTTIANVSV TIAGA+GAS Sbjct: 2 SSSQTRDIPLP-------PLSGGMLIGAALLLAAANFVAVLDTTIANVSVPTIAGAMGAS 54 Query: 65 TSQGTYVITSYAVAEAITVPLTGWLANRFGTVRVFILSMVMFGLFSALCGLANSLGMLIA 124 +SQGTYVITSYAVAEAITVPLTGWLA RFGTVRVFI S++MFG+ SALCG+A SL ML+ Sbjct: 55 SSQGTYVITSYAVAEAITVPLTGWLAGRFGTVRVFIASLIMFGVCSALCGMATSLEMLVL 114 Query: 125 FRVMQGLAGGPLMPLSQTLLLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSW 184 FRV QGLAGGPLMPLSQTLLLRIFPKEKA AA+GLW+MTTLVAP+ GPILGGV+CD+ W Sbjct: 115 FRVFQGLAGGPLMPLSQTLLLRIFPKEKAAAAIGLWSMTTLVAPVMGPILGGVICDRLHW 174 Query: 185 PYIFWINVPVALICGYLGWRMLKRFETKTSKLPIDRVGLILMVVWVAALQLMLDEGKEKD 244 YIF+INVPVALICGYLGWR+LKR+ET +LPID VGL L+VVWV ALQ+MLDEGK+ D Sbjct: 175 AYIFYINVPVALICGYLGWRLLKRYETGLMRLPIDAVGLALLVVWVGALQIMLDEGKDND 234 Query: 245 WFASTEIVLLAVTAVVFFIAFLIWELTEHNPIVDLRVFRHRGFTASVTTICLAFGAFFGS 304 WFASTEI +L + A + F +FLIWELTE +P+VDLRVFRHRGF+ASV TI LAFGAFFG+ Sbjct: 235 WFASTEIRVLGIIAAIGFASFLIWELTERHPVVDLRVFRHRGFSASVVTITLAFGAFFGA 294 Query: 305 VVLTPLWLQGYMGYTATWSGCISALTGILAVLTAPMVAKMSTTVDARKLVCIGVTWLGFI 364 VLTPLWLQ YMGYTATW+GC +A+TGILAV++AP+ A +S+ D R LV GV WLG I Sbjct: 295 TVLTPLWLQNYMGYTATWAGCATAMTGILAVISAPLAANLSSRFDGRWLVFAGVMWLGAI 354 Query: 365 TFLRAFNNTDMSFFQIGWPLFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTM 424 T LR NTDM+F+Q+ +PL LQG+GLP FFVPLTGLALSSV+E ETASAAGLM+FCRT Sbjct: 355 TLLRTHANTDMTFWQVAFPLLLQGVGLPFFFVPLTGLALSSVDEPETASAAGLMNFCRTF 414 Query: 425 AGAIATSIVNTSWENDATYFHAELSGLVDRSGDAVNAMMASGMSAEQATGSLAQTVQNQA 484 GAIATS+VNT WE+ Y AELSGLVD++G + +SG SA QA ++ VQ+QA Sbjct: 415 GGAIATSLVNTGWEDRTKYDRAELSGLVDQAGHFSTMLKSSGFSASQAQAQISDIVQSQA 474 Query: 485 VMLATNHIFMMAAVSFSLAALAVWLAPKPTRVADTTSAH 523 VMLATN +F MA F AALAVWLAPKPTRVADT+ AH Sbjct: 475 VMLATNQLFTMAGACFIFAALAVWLAPKPTRVADTSQAH 513 >ref|ZP_05876992.1| inner membrane component of tripartite multidrug resistance system [Vibrio furnissii CIP 102972] gb|EEX41273.1| inner membrane component of tripartite multidrug resistance system [Vibrio furnissii CIP 102972] Length = 511 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 313/501 (62%), Positives = 397/501 (79%) Query: 23 PLSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAIT 82 PLSGG L + LA ANF A+LDTTIANVSVS IAG LG S SQGTYVITSYAVAEAI+ Sbjct: 11 PLSGGALFLGALCLAMANFFAILDTTIANVSVSNIAGGLGTSLSQGTYVITSYAVAEAIS 70 Query: 83 VPLTGWLANRFGTVRVFILSMVMFGLFSALCGLANSLGMLIAFRVMQGLAGGPLMPLSQT 142 VPLTGWLA RFG++RVF+ FG FS LCGL+ SL ML+ RV G AGGPLMPLSQT Sbjct: 71 VPLTGWLARRFGSIRVFVTCFFFFGFFSLLCGLSTSLNMLVMCRVFLGFAGGPLMPLSQT 130 Query: 143 LLLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSWPYIFWINVPVALICGYLG 202 L++RIFPK+K+ AA+G+W+MTTLVAPI GPILGG+LCDQYSWP+IF++N+P A+ ++G Sbjct: 131 LMIRIFPKDKSHAAIGIWSMTTLVAPIMGPILGGILCDQYSWPFIFFVNIPFAIFASFVG 190 Query: 203 WRMLKRFETKTSKLPIDRVGLILMVVWVAALQLMLDEGKEKDWFASTEIVLLAVTAVVFF 262 W++LK++ETK +LPID++GL+L++VWVAALQLMLDEGK+ DWF S+ IV LAV A + F Sbjct: 191 WKILKKYETKNERLPIDKIGLLLLIVWVAALQLMLDEGKDHDWFESSRIVTLAVIAAIGF 250 Query: 263 IAFLIWELTEHNPIVDLRVFRHRGFTASVTTICLAFGAFFGSVVLTPLWLQGYMGYTATW 322 +AFLIWELTE NP+V+LRVFRHRG+ S+ T+ LAFGAFF + VLTPLWLQ +MGYTAT Sbjct: 251 VAFLIWELTERNPVVELRVFRHRGYAMSMVTLSLAFGAFFATTVLTPLWLQNFMGYTATI 310 Query: 323 SGCISALTGILAVLTAPMVAKMSTTVDARKLVCIGVTWLGFITFLRAFNNTDMSFFQIGW 382 SG +A GILAV AP++A +S+ D R V +GV WLGF TF+R+FN DM+F Q+ W Sbjct: 311 SGYATATMGILAVFLAPIIANLSSKYDPRPFVFVGVMWLGFWTFMRSFNTVDMTFEQVSW 370 Query: 383 PLFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDAT 442 P+F+QGIG+PLFFVPLT +AL SV E SAAGLM+F RT++GA ATS++NTSWE+++ Sbjct: 371 PMFVQGIGMPLFFVPLTAIALGSVKPHEMESAAGLMNFIRTLSGAFATSMINTSWEHESR 430 Query: 443 YFHAELSGLVDRSGDAVNAMMASGMSAEQATGSLAQTVQNQAVMLATNHIFMMAAVSFSL 502 Y HAEL+GL D++G A AM +GMSA+Q +L +Q Q+VM+ATN +F++ AV F++ Sbjct: 431 YVHAELAGLTDKAGVATQAMQNAGMSADQTRSALDGMLQGQSVMVATNQLFLVIAVIFAV 490 Query: 503 AALAVWLAPKPTRVADTTSAH 523 AA +W+APKP D ++AH Sbjct: 491 AACMIWMAPKPKHAVDASAAH 511 >ref|ZP_05925152.1| inner membrane component of tripartite multidrug resistance system [Vibrio sp. RC341] gb|EEX66437.1| inner membrane component of tripartite multidrug resistance system [Vibrio sp. RC341] Length = 511 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 319/501 (63%), Positives = 395/501 (78%) Query: 23 PLSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAIT 82 PLSG L + LA ANF+A+LDTTIANVSVS+IAG+LG STSQGTYVITSYAVAEAI+ Sbjct: 11 PLSGWALFFGALCLAMANFLAILDTTIANVSVSSIAGSLGTSTSQGTYVITSYAVAEAIS 70 Query: 83 VPLTGWLANRFGTVRVFILSMVMFGLFSALCGLANSLGMLIAFRVMQGLAGGPLMPLSQT 142 VPLTGWLA+RFG++RVF+ ++FG+FS LCGLANS+ L+ FR+ G AGGPLMPLSQT Sbjct: 71 VPLTGWLASRFGSIRVFVTCFLLFGVFSLLCGLANSMNTLVMFRIFLGFAGGPLMPLSQT 130 Query: 143 LLLRIFPKEKAPAAVGLWAMTTLVAPIAGPILGGVLCDQYSWPYIFWINVPVALICGYLG 202 L++RIFPK K+ AA+G+W+MTTLVAPI GPILGGVLCDQ SWPYIF+I +P A+ L Sbjct: 131 LMIRIFPKNKSHAAIGIWSMTTLVAPIMGPILGGVLCDQLSWPYIFFIKMPFAIAAALLC 190 Query: 203 WRMLKRFETKTSKLPIDRVGLILMVVWVAALQLMLDEGKEKDWFASTEIVLLAVTAVVFF 262 W++L++FETKT ID+VGL L+VVWVAALQLMLDEGK+ DWF S+ IV+LA AV+ F Sbjct: 191 WKLLRKFETKTKHSKIDKVGLALLVVWVAALQLMLDEGKDHDWFESSRIVMLAAIAVIGF 250 Query: 263 IAFLIWELTEHNPIVDLRVFRHRGFTASVTTICLAFGAFFGSVVLTPLWLQGYMGYTATW 322 IAFLIWELTE NP+VDL+VFRHRG++ S+ T+ LAFGAFF VLTPLWLQ YMGYTAT Sbjct: 251 IAFLIWELTERNPVVDLKVFRHRGYSMSMVTLSLAFGAFFSISVLTPLWLQIYMGYTATI 310 Query: 323 SGCISALTGILAVLTAPMVAKMSTTVDARKLVCIGVTWLGFITFLRAFNNTDMSFFQIGW 382 SG +A GILAV AP+VA +S+ D R V GV WLG TF+R FN DM+F QI W Sbjct: 311 SGQATAKMGILAVFLAPIVANLSSKFDPRPFVFFGVMWLGLWTFMRGFNTVDMTFSQISW 370 Query: 383 PLFLQGIGLPLFFVPLTGLALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDAT 442 PLF QGIG+PLFFVPLT +AL SV E SAAGLM+F RT++GA ATS++NTSWE++ Sbjct: 371 PLFFQGIGMPLFFVPLTAIALGSVKPHEIESAAGLMNFIRTLSGAFATSMINTSWEHETR 430 Query: 443 YFHAELSGLVDRSGDAVNAMMASGMSAEQATGSLAQTVQNQAVMLATNHIFMMAAVSFSL 502 Y HAEL+GL D++G A AM +SGMSAEQ+ ++ +QNQ+VM+ATN +F++ A+ F+ Sbjct: 431 YVHAELAGLTDKAGIATQAMQSSGMSAEQSRSAMDWMLQNQSVMVATNQLFIVIALIFAF 490 Query: 503 AALAVWLAPKPTRVADTTSAH 523 AA +W AP+P + DT++ H Sbjct: 491 AACMIWFAPRPKKAVDTSAVH 511