BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4002.p (410 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776657.1| multidrug resistance transmembrane efflux pu... 614 e-174 ref|YP_004752316.1| tripartite multidrug resistance system membr... 457 e-126 ref|ZP_03697303.1| secretion protein HlyD family protein [Lutiel... 396 e-108 ref|YP_004847579.1| multidrug resistance protein A [Pseudogulben... 395 e-108 gb|ADT86672.1| multidrug resistance protein VceA [Vibrio furniss... 385 e-105 >ref|YP_003776657.1| multidrug resistance transmembrane efflux pump protein [Herbaspirillum seropedicae SmR1] gb|ADJ64749.1| multidrug resistance transmembrane efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 411 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 387/409 (94%), Positives = 399/409 (97%) Query: 1 MSHSDSQAAHTLAEETRQRNEAATKAAAAQKRKKLFAIFGGVVAIAAIGYGTYWYLIGSR 60 MSHSDSQAAHTLAEE +QRNEAA+ AAAAQKRKKLF+IFGGVVAIAAIGYG YWYLIGSR Sbjct: 1 MSHSDSQAAHTLAEEAKQRNEAASAAAAAQKRKKLFSIFGGVVAIAAIGYGAYWYLIGSR 60 Query: 61 YVETDNAYTATEVATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADAKLAVDQAAADL 120 YVETDNAYTATE+ATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADA+LAVDQAAADL Sbjct: 61 YVETDNAYTATEIATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADARLAVDQAAADL 120 Query: 121 DRTERKVKGYFANDAGLAAQVLAREAEQKRASAQLLSAQADMKRAEIDLQRREALAKSGS 180 DRTERKVKG+FANDAGLAAQVLAREAEQKRASAQLLSAQAD+KRAEIDLQRREALAKSGS Sbjct: 121 DRTERKVKGFFANDAGLAAQVLAREAEQKRASAQLLSAQADLKRAEIDLQRREALAKSGS 180 Query: 181 VSGEELSNARTALLTAQANLKAAEAAEVQSRANIKATQGAQKASTVLTANTTVDDNPEVV 240 VSGEELSNARTALLTAQANLKAAEAAEVQSRANIKATQGAQKASTVLTANTTVDDNPEVV Sbjct: 181 VSGEELSNARTALLTAQANLKAAEAAEVQSRANIKATQGAQKASTVLTANTTVDDNPEVV 240 Query: 241 LARAKLDQAKLDLERTVLRAPVDGVIARRQVQVGQRVQSGASLLSVVPLQQMHVDANFKE 300 LARAKL+QAKLDLERTVLRAPVDGVIARRQVQVGQRVQSGA+LLSVVPLQQMHVDANFKE Sbjct: 241 LARAKLEQAKLDLERTVLRAPVDGVIARRQVQVGQRVQSGATLLSVVPLQQMHVDANFKE 300 Query: 301 GQLTKVRIGQPVTMKADIYGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLP 360 GQLTKVRIGQPVTMKAD+YGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLP Sbjct: 301 GQLTKVRIGQPVTMKADLYGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLP 360 Query: 361 VRISLDPKELAQRPLSVGLSMVVEIDTRGQMQAGDAQPKSASTETRAGA 409 VRISLDPKELAQRPLSVGLSMVVEIDTRGQ+QAGDAQ KSA + A Sbjct: 361 VRISLDPKELAQRPLSVGLSMVVEIDTRGQIQAGDAQRKSARNDNAQAA 409 >ref|YP_004752316.1| tripartite multidrug resistance system membrane fusion protein [Collimonas fungivorans Ter331] gb|AEK61493.1| Membrane fusion component of tripartite multidrug resistance system [Collimonas fungivorans Ter331] Length = 396 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 291/397 (73%), Positives = 339/397 (85%), Gaps = 2/397 (0%) Query: 1 MSHSDSQAAHTLAEETRQRNEAATKAAAAQKRKKLFAIFGGVVAIAAIGYGTYWYLIGSR 60 MSHSDSQA LA + + A +AA +KRKKLFAI GGVV + + Y TYW+ IGSR Sbjct: 1 MSHSDSQAVQELA--STEATLKAEQAATTKKRKKLFAILGGVVLLGGLSYATYWHFIGSR 58 Query: 61 YVETDNAYTATEVATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADAKLAVDQAAADL 120 Y+ TDNAYTA E++ +TPAINGIVA V VVDTQ VK+G+VLV ID++DAKLA+ QA ADL Sbjct: 59 YISTDNAYTAAEISQITPAINGIVADVKVVDTQYVKQGEVLVVIDNSDAKLALLQAEADL 118 Query: 121 DRTERKVKGYFANDAGLAAQVLAREAEQKRASAQLLSAQADMKRAEIDLQRREALAKSGS 180 DR++R+V+ YFANDAGLAAQVLAR+AEQ RA+AQ+LSAQAD++RAE+DL+RREALAKSGS Sbjct: 119 DRSQRRVQAYFANDAGLAAQVLARDAEQSRAAAQVLSAQADLQRAELDLRRREALAKSGS 178 Query: 181 VSGEELSNARTALLTAQANLKAAEAAEVQSRANIKATQGAQKASTVLTANTTVDDNPEVV 240 VSGEEL+NAR+ALLTAQA++K AEA +Q+++N A GAQ+ASTVLTANTTV NPEV Sbjct: 179 VSGEELTNARSALLTAQASMKVAEAGAIQAKSNRSAAIGAQQASTVLTANTTVATNPEVE 238 Query: 241 LARAKLDQAKLDLERTVLRAPVDGVIARRQVQVGQRVQSGASLLSVVPLQQMHVDANFKE 300 LARAK DQAKLDLERTVLRAPVDGV+ARRQVQVGQRVQ+G +L++VVP Q MHVDANFKE Sbjct: 239 LARAKRDQAKLDLERTVLRAPVDGVVARRQVQVGQRVQAGTALMTVVPTQSMHVDANFKE 298 Query: 301 GQLTKVRIGQPVTMKADIYGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLP 360 GQLT+V++GQPVTM ADIYGGSVEYHG V GLSGGTGSAFA+IPAQNATGNWIKVVQRLP Sbjct: 299 GQLTQVQLGQPVTMSADIYGGSVEYHGTVVGLSGGTGSAFAMIPAQNATGNWIKVVQRLP 358 Query: 361 VRISLDPKELAQRPLSVGLSMVVEIDTRGQMQAGDAQ 397 VRIS+D KEL +PLSVGLSM V IDTRG A A+ Sbjct: 359 VRISIDRKELIAKPLSVGLSMEVAIDTRGDKSAPAAR 395 >ref|ZP_03697303.1| secretion protein HlyD family protein [Lutiella nitroferrum 2002] gb|EEG09789.1| secretion protein HlyD family protein [Lutiella nitroferrum 2002] Length = 379 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 244/363 (67%), Positives = 294/363 (80%) Query: 29 AQKRKKLFAIFGGVVAIAAIGYGTYWYLIGSRYVETDNAYTATEVATVTPAINGIVAAVD 88 A KRKKLF GG VA++A YG YW L+ S +V TDNAY A E+A VTP+I+ V AV Sbjct: 17 AAKRKKLFLALGGAVALSAAAYGAYWTLVASHHVTTDNAYVAAEIAQVTPSISANVRAVK 76 Query: 89 VVDTQAVKKGDVLVRIDDADAKLAVDQAAADLDRTERKVKGYFANDAGLAAQVLAREAEQ 148 VVDTQAVK+GDVLV +DD DA+LA++QA A+L R ERKVKGY A+D GL AQV AR+AE Sbjct: 77 VVDTQAVKRGDVLVELDDTDARLALEQAEAELARAERKVKGYLASDDGLQAQVSARDAEL 136 Query: 149 KRASAQLLSAQADMKRAEIDLQRREALAKSGSVSGEELSNARTALLTAQANLKAAEAAEV 208 RA AQL SAQ+D++RA+IDL+RR+ALAKSGSVSGEEL++A+TA TA++ L+AA+AA Sbjct: 137 LRAKAQLSSAQSDLERAKIDLERRQALAKSGSVSGEELTHAKTAYDTAKSALEAAKAALA 196 Query: 209 QSRANIKATQGAQKASTVLTANTTVDDNPEVVLARAKLDQAKLDLERTVLRAPVDGVIAR 268 Q+ AN A QG+ KA+ LTANTTVD NPEV LARAK +QA++DLERTV+RAP+DGV+A+ Sbjct: 197 QAGANKLAAQGSLKANQTLTANTTVDTNPEVALARAKRNQARVDLERTVIRAPIDGVVAK 256 Query: 269 RQVQVGQRVQSGASLLSVVPLQQMHVDANFKEGQLTKVRIGQPVTMKADIYGGSVEYHGV 328 RQVQVGQR+QSGA L+SVVPLQQ+HVDANFKE QL KVR+GQPVT+ +DIYG V YHG Sbjct: 257 RQVQVGQRIQSGAQLMSVVPLQQVHVDANFKEVQLEKVRVGQPVTLHSDIYGSDVVYHGK 316 Query: 329 VTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQRPLSVGLSMVVEIDTR 388 V G SGG+GSAF++IPAQNATGNWIKVVQRLP+RI LDP EL PL VGLSM +DT Sbjct: 317 VVGFSGGSGSAFSLIPAQNATGNWIKVVQRLPLRIELDPAELKVHPLQVGLSMTATVDTA 376 Query: 389 GQM 391 + Sbjct: 377 SNL 379 >ref|YP_004847579.1| multidrug resistance protein A [Pseudogulbenkiania sp. NH8B] dbj|BAK77165.1| multidrug resistance protein A [Pseudogulbenkiania sp. NH8B] Length = 379 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 243/363 (66%), Positives = 293/363 (80%) Query: 29 AQKRKKLFAIFGGVVAIAAIGYGTYWYLIGSRYVETDNAYTATEVATVTPAINGIVAAVD 88 A KRKKLF GG VA++A YG YW L+ S +V TDNAY A E+A VTP+I+ V AV Sbjct: 17 AAKRKKLFLALGGAVALSAAAYGAYWTLVASHHVTTDNAYVAAEIAQVTPSISANVRAVK 76 Query: 89 VVDTQAVKKGDVLVRIDDADAKLAVDQAAADLDRTERKVKGYFANDAGLAAQVLAREAEQ 148 VVDTQAVK+GDVLV +DD DA+LA++Q A+L R ERKVKGY A+D GL AQV AR+AE Sbjct: 77 VVDTQAVKRGDVLVELDDTDARLALEQTEAELARAERKVKGYLASDDGLQAQVSARDAEL 136 Query: 149 KRASAQLLSAQADMKRAEIDLQRREALAKSGSVSGEELSNARTALLTAQANLKAAEAAEV 208 RA AQL SAQ+D++RA+IDL+RR+ALAKSGSVSGEEL++A+TA TA++ L+AA+AA Sbjct: 137 LRAKAQLSSAQSDLERAKIDLERRQALAKSGSVSGEELTHAKTAYDTAKSALEAAKAALA 196 Query: 209 QSRANIKATQGAQKASTVLTANTTVDDNPEVVLARAKLDQAKLDLERTVLRAPVDGVIAR 268 Q+ AN A QG+ KA+ LTANTTVD NPEV LARAK +QA++DLERTV+RAP+DGV+A+ Sbjct: 197 QAEANKLAAQGSLKANQTLTANTTVDTNPEVALARAKRNQARVDLERTVIRAPIDGVVAK 256 Query: 269 RQVQVGQRVQSGASLLSVVPLQQMHVDANFKEGQLTKVRIGQPVTMKADIYGGSVEYHGV 328 RQVQVGQR+QSGA L+SVVPLQQ+HVDANFKE QL KVR+GQPVT+ +DIYG V YHG Sbjct: 257 RQVQVGQRIQSGAQLMSVVPLQQVHVDANFKEVQLEKVRVGQPVTLHSDIYGSDVVYHGK 316 Query: 329 VTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQRPLSVGLSMVVEIDTR 388 V G SGG+GSAF++IPAQNATGNWIKVVQRLP+RI LDP EL PL VGLSM +DT Sbjct: 317 VAGFSGGSGSAFSLIPAQNATGNWIKVVQRLPLRIELDPAELKVHPLQVGLSMTATVDTA 376 Query: 389 GQM 391 + Sbjct: 377 SNL 379 >gb|ADT86672.1| multidrug resistance protein VceA [Vibrio furnissii NCTC 11218] Length = 399 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 229/362 (63%), Positives = 282/362 (77%) Query: 26 AAAAQKRKKLFAIFGGVVAIAAIGYGTYWYLIGSRYVETDNAYTATEVATVTPAINGIVA 85 A A Q RKK F V +A GYG YW+ IGSRYV TDNAY A E+A VTPA+ GI+A Sbjct: 17 ARAKQSRKKGFLALAAAVILAGGGYGAYWHFIGSRYVSTDNAYAAAEIAEVTPAVGGIIA 76 Query: 86 AVDVVDTQAVKKGDVLVRIDDADAKLAVDQAAADLDRTERKVKGYFANDAGLAAQVLARE 145 +V VVDTQ V KGDVLV+IDD DA+LA+ QA ADL R+V+ Y AND GL A V A+E Sbjct: 77 SVSVVDTQYVNKGDVLVQIDDTDARLALSQAEADLALATRRVRSYLANDEGLTAMVEAQE 136 Query: 146 AEQKRASAQLLSAQADMKRAEIDLQRREALAKSGSVSGEELSNARTALLTAQANLKAAEA 205 A ++RA AQL +AQAD RA+IDL RRE L +SGSVSGEEL+NA+T AQANL AA+A Sbjct: 137 ASEQRAEAQLKAAQADFARAKIDLARREDLVRSGSVSGEELTNAKTGFQQAQANLNAAKA 196 Query: 206 AEVQSRANIKATQGAQKASTVLTANTTVDDNPEVVLARAKLDQAKLDLERTVLRAPVDGV 265 A Q++A +T G+QKA+ LT NTTV++NPEV+LA+A+ +QA++DLERTV+RAP+ G+ Sbjct: 197 AMAQAQATKLSTIGSQKANAALTDNTTVENNPEVLLAKARYEQAQIDLERTVIRAPISGI 256 Query: 266 IARRQVQVGQRVQSGASLLSVVPLQQMHVDANFKEGQLTKVRIGQPVTMKADIYGGSVEY 325 IA+RQVQVG+RVQ G L++VVP+ ++VDANFKE +L V++GQPVT+ AD+YG V Y Sbjct: 257 IAKRQVQVGRRVQVGMPLMTVVPVNNIYVDANFKEVELRNVKVGQPVTLTADLYGDDVTY 316 Query: 326 HGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQRPLSVGLSMVVEI 385 HGVV G SGGTGSAF++IPAQNATGNWIKVVQRLPVRI LDPK+L PL VGLSM+V + Sbjct: 317 HGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPVRIELDPKDLQSHPLQVGLSMIVTV 376 Query: 386 DT 387 DT Sbjct: 377 DT 378