BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4000.p (519 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776656.1| outer membrane multidrug resistance lipoprot... 749 0.0 ref|YP_004752317.1| tripartite multidrug resistance system outer... 549 e-154 ref|YP_003910796.1| RND efflux system, outer membrane lipoprotei... 493 e-137 ref|NP_519975.1| outer membrane multidrug resistance lipoprotein... 445 e-123 ref|YP_001684811.1| RND efflux system outer membrane lipoprotein... 416 e-114 >ref|YP_003776656.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ64748.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 749 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 459/519 (88%), Positives = 474/519 (91%), Gaps = 4/519 (0%) Query: 1 MNKNSSLPDQRAPYPALRSERPTLPWRRTAAVSAAVLTAALMAGCASFTDLGARAEPKSI 60 MN NSS D P +R W R +V AAVL A LMAGCASF+DLG RA+PKSI Sbjct: 1 MNSNSSTLD----LPIQPPQRSGRAWPRAVSVLAAVLAATLMAGCASFSDLGERAQPKSI 56 Query: 61 DQYQSSQTLAATAVQTAWPSDQWWTVYGDAQLNGLIAEALQSAPSMAVAKARLMKAEGTA 120 D+YQS Q+LAA+AVQ AWPSDQWW VYGDAQLN LI EALQSAPSMAVAKARLMKAEG A Sbjct: 57 DRYQSQQSLAASAVQAAWPSDQWWRVYGDAQLNALIDEALQSAPSMAVAKARLMKAEGAA 116 Query: 121 QQQGAALYPQVSGNASLDRMKQSYNNGVPPDFVPKGYNNETRATLDFSYEIDFWGKNRAA 180 QQQGAALYPQVS NASLDRMKQSYNNGVPPDFVPK YNN TRATLDFSYEIDFWGKNRAA Sbjct: 117 QQQGAALYPQVSANASLDRMKQSYNNGVPPDFVPKDYNNATRATLDFSYEIDFWGKNRAA 176 Query: 181 LAAATSELEASRADAAQARITLATSIASAYADLAQLYAQRDTNEAALKVREETLDLFNQR 240 LAAATSELEASRADAAQARITLATSIASAYA+LAQLYAQRDTNEAALKVR E+LDLFNQR Sbjct: 177 LAAATSELEASRADAAQARITLATSIASAYAELAQLYAQRDTNEAALKVRVESLDLFNQR 236 Query: 241 FTNGLETRGSVKQMEARRAIAQADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDL 300 FTNGLETRGSVKQMEARRAIAQADLKATDESI LQRNKLAAL GAGPDRGLQL RPQIDL Sbjct: 237 FTNGLETRGSVKQMEARRAIAQADLKATDESIGLQRNKLAALLGAGPDRGLQLTRPQIDL 296 Query: 301 SKPFGLPAQLPVELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNLSAYFGFQSLGID 360 S+PF LPAQLPVELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNL+AYFGFQSLGID Sbjct: 297 SRPFALPAQLPVELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNLTAYFGFQSLGID 356 Query: 361 MLTRSGSDIGSFGPAISLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGV 420 MLTR+GSDIGS GPAISLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGV Sbjct: 357 MLTRAGSDIGSIGPAISLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGV 416 Query: 421 SEKALAGRLQDVQAAADAAEEAYRIVSNRYNGGLNTYLDVLNAQDTLISNLRQLSDLRSR 480 SEKALAGRL DVQAAADAAEEAYRIVSNRYNGGL TYLDVLNAQDTLISNLRQLSDLRSR Sbjct: 417 SEKALAGRLADVQAAADAAEEAYRIVSNRYNGGLATYLDVLNAQDTLISNLRQLSDLRSR 476 Query: 481 LFTLDVALVRALGGGYRAADDSKSQDSATAPHTEQQAKG 519 +FTLDVALVRALGGGYRAADDS SQ+SA AP + QAKG Sbjct: 477 MFTLDVALVRALGGGYRAADDSSSQNSADAPLHDTQAKG 515 >ref|YP_004752317.1| tripartite multidrug resistance system outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61494.1| Outer membrane component of tripartite multidrug resistance system [Collimonas fungivorans Ter331] Length = 488 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 343/479 (71%), Positives = 389/479 (81%), Gaps = 6/479 (1%) Query: 21 RPTLPWRRTAAVSAAVLTAALMAGCASFTDLGARAEPKSIDQYQSSQTLAATAVQTAWPS 80 RP P AA+S VL ++ +GCA F+++G RA PK I YQ+ Q LA AV +WP Sbjct: 14 RPCFP--PYAALSLCVLALSI-SGCAPFSEIGPRAVPKDISSYQAGQ-LAGNAV--SWPD 67 Query: 81 DQWWTVYGDAQLNGLIAEALQSAPSMAVAKARLMKAEGTAQQQGAALYPQVSGNASLDRM 140 D WWT+Y D QL+ LIAE L+ APS+A A+ARL+KA+G AQQQGAAL PQVS NAS D M Sbjct: 68 DNWWTIYRDPQLDRLIAEGLKGAPSLAAAQARLLKAQGVAQQQGAALLPQVSANASADYM 127 Query: 141 KQSYNNGVPPDFVPKGYNNETRATLDFSYEIDFWGKNRAALAAATSELEASRADAAQARI 200 KQSYNNGVPP+FVP YN E +ATL+ SYEIDFWGKNRAALAAATS+LEA+RADAAQARI Sbjct: 128 KQSYNNGVPPEFVPPNYNVEGKATLNLSYEIDFWGKNRAALAAATSDLEAARADAAQARI 187 Query: 201 TLATSIASAYADLAQLYAQRDTNEAALKVREETLDLFNQRFTNGLETRGSVKQMEARRAI 260 LATSIA+AYA+ +L +Q DT + AL+VR +TLDLF QR NGLET GSVKQ+ AR+A Sbjct: 188 ALATSIAAAYAEFERLLSQHDTAQEALQVRIQTLDLFEQRRLNGLETLGSVKQVVARKAS 247 Query: 261 AQADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPAQLPVELLGRRPD 320 A+ADL + DESIALQRNKLAAL GAGPDRGL L RP +DLSKPF LP+QLPV LLGRRPD Sbjct: 248 AEADLLSLDESIALQRNKLAALLGAGPDRGLSLQRPVLDLSKPFALPSQLPVNLLGRRPD 307 Query: 321 IVAARLRAEAAGKQIKVARAAFYPNVNLSAYFGFQSLGIDMLTRSGSDIGSFGPAISLPI 380 +VAARLRAEAA KQIKVA+A FYPNVNL+AY GFQSLG+ MLT++GSDIGS GPAISLPI Sbjct: 308 VVAARLRAEAAAKQIKVAKAQFYPNVNLTAYLGFQSLGLGMLTKAGSDIGSIGPAISLPI 367 Query: 381 FNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALAGRLQDVQAAADAAE 440 F GGRLRGQ+R ASASYDEAVANYD AVTQALQDVAD VSEKAL+GRL VQ A DAA Sbjct: 368 FEGGRLRGQYRQASASYDEAVANYDNAVTQALQDVADAAVSEKALSGRLGKVQEAVDAAA 427 Query: 441 EAYRIVSNRYNGGLNTYLDVLNAQDTLISNLRQLSDLRSRLFTLDVALVRALGGGYRAA 499 A +I NRY GGL TYLDVLNAQDTL++N R LS LRSR+F LDV LVRALGGGYR A Sbjct: 428 AAAQIAQNRYAGGLATYLDVLNAQDTLLTNQRDLSTLRSRMFALDVQLVRALGGGYRQA 486 >ref|YP_003910796.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1003] gb|ADN61505.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1003] Length = 496 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 278/467 (59%), Positives = 354/467 (75%), Gaps = 1/467 (0%) Query: 33 SAAVLTAALMAGCASFTDLGARAEPKSIDQYQSSQTLAATA-VQTAWPSDQWWTVYGDAQ 91 + A+ L + CA F D+ + PK + Y+++ + + A Q+ WP +QWW Y D Q Sbjct: 4 ATALAVTMLASACAQFPDMPQKPSPKDVGSYETTHSFSTAAQAQSTWPIEQWWLRYNDPQ 63 Query: 92 LNGLIAEALQSAPSMAVAKARLMKAEGTAQQQGAALYPQVSGNASLDRMKQSYNNGVPPD 151 LN LIAEAL+ P++A A+ARL AE +AQQ GA L P++S S+++ KQSYNNG PP Sbjct: 64 LNALIAEALKGEPTLASAQARLHNAEASAQQAGATLLPEISAQGSVEKEKQSYNNGFPPA 123 Query: 152 FVPKGYNNETRATLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITLATSIASAYA 211 VP G+ A L+FSYE+DFWGKNRA+LAAATSELEA+RAD AQAR+ LA SIA AYA Sbjct: 124 LVPHGWRPYGTAELNFSYEVDFWGKNRASLAAATSELEAARADVAQARMVLAASIADAYA 183 Query: 212 DLAQLYAQRDTNEAALKVREETLDLFNQRFTNGLETRGSVKQMEARRAIAQADLKATDES 271 DLA+ +A+RD+ EAA+KVR ++ LF +RF NGLET+ VKQ E+R A+ADL DE+ Sbjct: 184 DLARQFAERDSAEAAVKVRTQSAQLFAERFANGLETQAGVKQAESRLQSARADLFELDEA 243 Query: 272 IALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPAQLPVELLGRRPDIVAARLRAEAA 331 IAL RN++AAL G GPDRGL + RP +DL++P +PA L + LLGRRPD+V ARLRAEAA Sbjct: 244 IALTRNRIAALMGEGPDRGLGIGRPAVDLTQPVAMPAGLALGLLGRRPDVVIARLRAEAA 303 Query: 332 GKQIKVARAAFYPNVNLSAYFGFQSLGIDMLTRSGSDIGSFGPAISLPIFNGGRLRGQFR 391 K+I VA+A FYPNVNLSA GFQSLG++MLTR+GS +G+ GPAI+LPIFNGGRLRGQ R Sbjct: 304 SKRIDVAKAGFYPNVNLSAMIGFQSLGLNMLTRAGSAVGNVGPAITLPIFNGGRLRGQLR 363 Query: 392 SASASYDEAVANYDQAVTQALQDVADVGVSEKALAGRLQDVQAAADAAEEAYRIVSNRYN 451 A A+YDEAVANYD+ +T+AL DVADV VS++AL RLQ QA+ DAA +++R+ RY Sbjct: 364 GARATYDEAVANYDETLTKALHDVADVAVSKRALTDRLQATQASYDAAAQSHRVALERYQ 423 Query: 452 GGLNTYLDVLNAQDTLISNLRQLSDLRSRLFTLDVALVRALGGGYRA 498 GGL+ YLDVL+A DTL+S RQL+D+RSR FTLDV+L+RALGGGY A Sbjct: 424 GGLSGYLDVLSAADTLVSAQRQLADMRSRTFTLDVSLIRALGGGYEA 470 >ref|NP_519975.1| outer membrane multidrug resistance lipoprotein [Ralstonia solanacearum GMI1000] emb|CAD15556.1| putative outer membrane multidrug resistance lipoprotein [Ralstonia solanacearum GMI1000] Length = 475 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 284/477 (59%), Positives = 342/477 (71%), Gaps = 16/477 (3%) Query: 23 TLPWRRTAAVSAAVLTAALMAG-CASFTDLGARAEPKSIDQYQSSQTLAATAVQTAWPSD 81 TL W R + VL AL+AG CA F + R P++ + S+ + A AWP D Sbjct: 11 TLRWLR----AGVVLPLALVAGACAQFPEASERPTPQTPEGLHSAS--SLAASAVAWPDD 64 Query: 82 QWWTVYGDAQLNGLIAEALQSAPSMAVAKARLMKAEGTAQQQGAALYPQVSGNASLDRMK 141 WW YGDAQLN LI EAL+ +P MA A ARL AE GAAL PQVS NAS R + Sbjct: 65 HWWQAYGDAQLNALIGEALRDSPDMAAAAARLRGAEAAGAVAGAALLPQVSANASAARQR 124 Query: 142 QSYNNGVPPDFVPKGYNNETRATLDFSYEIDFWGKNRAALAAATSELEASRADAAQARIT 201 QS ++ +N RATLDFS+EIDFWG+NRA+LAAATS+LEASRADAAQAR+T Sbjct: 125 QSGSSD---------WNEVGRATLDFSWEIDFWGRNRASLAAATSDLEASRADAAQARLT 175 Query: 202 LATSIASAYADLAQLYAQRDTNEAALKVREETLDLFNQRFTNGLETRGSVKQMEARRAIA 261 LA++IAS+YADLA LYA RD +EAAL VR + LF +RF +GLETR VKQ EA A A Sbjct: 176 LASAIASSYADLAGLYAVRDADEAALAVRRHSAQLFTERFASGLETRSGVKQAEALLASA 235 Query: 262 QADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPAQLPVELLGRRPDI 321 + +L DESI L R+ LAAL GAGPDRGL + RP + + P GLPA+L V LLGRRPD+ Sbjct: 236 EGELLRVDESIGLTRHALAALVGAGPDRGLTIRRPSVAIRSPEGLPAELAVNLLGRRPDV 295 Query: 322 VAARLRAEAAGKQIKVARAAFYPNVNLSAYFGFQSLGIDMLTRSGSDIGSFGPAISLPIF 381 VAARL+AEA +I RA FYPNVNLSA+ GF+S+G+ L +SGS IGS GPA+SLPIF Sbjct: 296 VAARLQAEAQVHRIDSKRAEFYPNVNLSAFIGFESIGLSNLFKSGSRIGSIGPAVSLPIF 355 Query: 382 NGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALAGRLQDVQAAADAAEE 441 NGGRLRG+ + A ASYDEAVANY++ +TQALQDVAD +S KALA RL V+ A AAE+ Sbjct: 356 NGGRLRGELKRAQASYDEAVANYNRTLTQALQDVADAWLSRKALAPRLAKVEEAFRAAEQ 415 Query: 442 AYRIVSNRYNGGLNTYLDVLNAQDTLISNLRQLSDLRSRLFTLDVALVRALGGGYRA 498 AYR+ NRY GGL +YL+VL AQDTL++N R L+DL+SR FTLDVA+ RALGGGYRA Sbjct: 416 AYRVTLNRYEGGLASYLEVLTAQDTLLTNQRALTDLQSRAFTLDVAMTRALGGGYRA 472 >ref|YP_001684811.1| RND efflux system outer membrane lipoprotein [Caulobacter sp. K31] gb|ABZ72313.1| RND efflux system, outer membrane lipoprotein, NodT family [Caulobacter sp. K31] Length = 502 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 267/473 (56%), Positives = 339/473 (71%), Gaps = 2/473 (0%) Query: 28 RTAAVSAAVLTAALM-AGCASFTDLGARAEPKSIDQYQSSQTLAATAVQTAWPSDQWWTV 86 R V+ ++L AAL+ + CA+ D K+ D Y ++Q+LA T AWP D WW Sbjct: 31 RDIGVTVSILLAALLTSACATMPDATPARVAKAPDAYATAQSLATTT-DAAWPVDTWWKA 89 Query: 87 YGDAQLNGLIAEALQSAPSMAVAKARLMKAEGTAQQQGAALYPQVSGNASLDRMKQSYNN 146 YGD QL+ LI EAL +P++A A+ARL +A+ A Q AA P VS + ++R KQSYNN Sbjct: 90 YGDTQLDSLIDEALIGSPTLAQAEARLRRAQALANQAKAAQRPSVSASGGVERSKQSYNN 149 Query: 147 GVPPDFVPKGYNNETRATLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITLATSI 206 G+P DFVP+GYN+ R +LDFS+E+DFWGKNRAA+AAATSE A++ADAAQAR+ LATS+ Sbjct: 150 GIPADFVPQGYNDYGRLSLDFSWELDFWGKNRAAVAAATSEARAAQADAAQARLMLATSV 209 Query: 207 ASAYADLAQLYAQRDTNEAALKVREETLDLFNQRFTNGLETRGSVKQMEARRAIAQADLK 266 A+AYADLA+LYA+RD E ++ +R+ETL L + R TNGL+TRG ++Q EA A+A+L Sbjct: 210 AAAYADLARLYAERDVAERSVALRQETLHLVSDRVTNGLDTRGELRQAEAGPPNARAELA 269 Query: 267 ATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPAQLPVELLGRRPDIVAARL 326 A DE IA RN LAAL GAGPDRGL + RP + KPFGLPA L +L+GRRPD+VAA+ Sbjct: 270 AIDEQIAQTRNGLAALLGAGPDRGLTIVRPAVASLKPFGLPANLAADLIGRRPDVVAAKW 329 Query: 327 RAEAAGKQIKVARAAFYPNVNLSAYFGFQSLGIDMLTRSGSDIGSFGPAISLPIFNGGRL 386 RAEA+ K+I A+AAFYPNVNL+A G QSL +D L SGSD+GS GPA+SLPIF GGRL Sbjct: 330 RAEASSKRIGQAKAAFYPNVNLAAAIGVQSLHLDKLFDSGSDVGSVGPAVSLPIFEGGRL 389 Query: 387 RGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALAGRLQDVQAAADAAEEAYRIV 446 + R+A A D AVA YD AVTQAL+DVADV SE+AL RL + +AA A E+ YRI Sbjct: 390 KANLRAAEADRDGAVAAYDSAVTQALRDVADVAASERALDKRLSESRAALAANEDGYRIA 449 Query: 447 SNRYNGGLNTYLDVLNAQDTLISNLRQLSDLRSRLFTLDVALVRALGGGYRAA 499 RY GGL+TY +VL + L++ R ++DL SR LDVALVRALGGG+ A Sbjct: 450 KLRYQGGLSTYQNVLIVEQALLTQRRIVADLESRALALDVALVRALGGGFTPA 502