BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3999.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776655.1| transcription regulator protein [Herbaspiril... 334 4e-90 ref|YP_004752318.1| TetR family transcriptional regulator [Colli... 218 5e-55 gb|ADT86670.1| transcriptional regulator, TetR family [Vibrio fu... 171 7e-41 ref|YP_002892243.1| transcriptional regulator, TetR family [Tolu... 167 9e-40 emb|CBJ40435.1| putative transcription regulator protein, TetR f... 166 1e-39 >ref|YP_003776655.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64747.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 173/200 (86%), Positives = 186/200 (93%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MRKKSEERRQ MIDIAAEVFNEIGFE ASMAEISARIGGSKATLYNYF+SKEEIFVEVMI Sbjct: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 Query: 61 KQVGCQFEELFMALRNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPLL 120 KQVGCQFEELFMALRNED+V+ GLLRLA HYL VVFRPEIVAVKRLG+YYAGKS LGPLL Sbjct: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 Query: 121 YERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPPD 180 YERGPKRGWTRIA+FL+ KM+EGKLH DPW+AAMQ+R L+EAEWM+VRMLNVVT+I D Sbjct: 121 YERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 Query: 181 QLRTSAERAVEAFLYLYQPR 200 QL SA+RAVEAFLYLYQPR Sbjct: 181 QLDASAQRAVEAFLYLYQPR 200 >ref|YP_004752318.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61495.1| Transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 199 Score = 218 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 110/197 (55%), Positives = 150/197 (76%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MRKKSEERRQ ++D+AA++FNE GFEG SM++ISAR+GGSKATLYNYFSSKEEIFVEV++ Sbjct: 1 MRKKSEERRQAILDVAAQMFNESGFEGTSMSDISARLGGSKATLYNYFSSKEEIFVEVLL 60 Query: 61 KQVGCQFEELFMALRNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPLL 120 +Q G QF+ F +L D++RA L R YL +PEI+A +RL +Y+A +S+LG ++ Sbjct: 61 RQAGAQFDLTFASLVESDDLRAVLQRFGAMYLQAKLQPEIIAARRLILYHAERSQLGQVM 120 Query: 121 YERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPPD 180 YERGPK+G TR+A+F M ++ D W+AA+QF L+EAEW++VRML VVT + Sbjct: 121 YERGPKKGTTRMAEFFASAMARKQIREADAWLAALQFHGLMEAEWIEVRMLGVVTAVTAA 180 Query: 181 QLRTSAERAVEAFLYLY 197 ++R S ERAV+AF+ +Y Sbjct: 181 KVRDSVERAVDAFMRIY 197 >gb|ADT86670.1| transcriptional regulator, TetR family [Vibrio furnissii NCTC 11218] Length = 199 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 124/197 (62%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MR KSEE+RQ +++IA F + GFE SM+ I+ +GGSKATLYNYFSSKEEIF VM Sbjct: 1 MRVKSEEKRQAILEIAKNSFTQQGFEQTSMSHIAKELGGSKATLYNYFSSKEEIFCAVMK 60 Query: 61 KQVGCQFEELFMALRNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPLL 120 Q + F++L E+R LL ++L V P+ +A+ R+ ++ A +S +G Sbjct: 61 SSATEQIAQSFLSLDPNREIRTSLLEFGYNFLSSVLTPDAMAIYRMAIHEADRSSIGRHF 120 Query: 121 YERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPPD 180 YE GPK GW ++D++ ++ +G L A D WIAAMQF+AL+ AE ++ L + + P Sbjct: 121 YENGPKCGWIHLSDYIDSQVKKGTLKACDTWIAAMQFKALLSAEHIEPFALGAIEKPKPA 180 Query: 181 QLRTSAERAVEAFLYLY 197 +L+ + RAV+ FL LY Sbjct: 181 ELKATTLRAVDTFLTLY 197 >ref|YP_002892243.1| transcriptional regulator, TetR family [Tolumonas auensis DSM 9187] gb|ACQ92657.1| transcriptional regulator, TetR family [Tolumonas auensis DSM 9187] Length = 199 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 87/201 (43%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MR KSE RRQ +I++A + F GFE SM+EI++R+GGSKATLYNYFSSKEEIF VM Sbjct: 1 MRVKSEARRQAIIEVAKDAFIRQGFENTSMSEIASRVGGSKATLYNYFSSKEEIFAAVME 60 Query: 61 KQVGCQFEELFMALRNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPLL 120 + F L + D++R L HYL + P+I+A++++ + A +S++G Sbjct: 61 SSATEKIANAFKILEDSDDIRTTLTNFGMHYLHSILAPDIMAIRKMALNEADRSDIGRHF 120 Query: 121 YERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPPD 180 YE GPK+GW I+++L+ ++D+ L D I AM +AL+EAE ++ L V+ PPD Sbjct: 121 YENGPKKGWELISNYLQKQIDQHNLSTCDAGICAMHLKALLEAELVEPYALGVIA--PPD 178 Query: 181 --QLRTSAERAVEAFLYLYQP 199 QL RA+ FL YQP Sbjct: 179 ESQLIAIVSRAITVFLRAYQP 199 >emb|CBJ40435.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CMR15] Length = 202 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 120/197 (60%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MRKK+EE+RQ +ID A VF E+GF+ ASM++I+AR G SKATLYNYFSSKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAALHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPLL 120 + E F L++ V L HYL + RP +VA++RL + +S LG Sbjct: 61 GTAADEIREAFAQLKSSGPVADTLAVFGEHYLNAILRPSLVAIRRLAICEGDRSNLGRAF 120 Query: 121 YERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPPD 180 YE GPKRGW +A+FL M+ G L + IAA AL EAE +++ +L V +I P Sbjct: 121 YEHGPKRGWAMLAEFLGEAMEAGALKQRNTDIAAAHLHALYEAECVELCLLGVPVDISPG 180 Query: 181 QLRTSAERAVEAFLYLY 197 ++ RAV+ F+ Y Sbjct: 181 RIAEGVARAVDVFMAAY 197