BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3993.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754116.1| transcriptional regulator [Collimonas fungiv... 545 e-153 ref|YP_002983089.1| LysR family transcriptional regulator [Ralst... 484 e-135 ref|YP_001901029.1| LysR family transcriptional regulator [Ralst... 484 e-135 ref|ZP_07675211.1| transcriptional regulator, LysR family [Ralst... 484 e-135 ref|ZP_04579737.1| transcriptional regulator [Oxalobacter formig... 480 e-133 >ref|YP_004754116.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63293.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 302 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 248/302 (82%), Positives = 276/302 (91%) Query: 1 MDKLKQIEAFVLVVDKGSLAAAALEDKVTPVMMGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAFV VV+KGSLA+AALE +TPVM+GRRIDALEKRLGTKLMHRTTRHLTLTE Sbjct: 1 MDKLKQIEAFVSVVEKGSLASAALEQNITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 Query: 61 QGSVFLDHCRKLLEQMDTAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VFLDHCRKLL ++D AEK I+EGRHKATGHLVVS PAA+GR HVAPHAP F+A +PE Sbjct: 61 QGTVFLDHCRKLLTELDIAEKIISEGRHKATGHLVVSAPAAFGRKHVAPHAPAFIATNPE 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRT 180 VQISFNLTDRVVDLVREGYD+ IRIGGAI+P+FVAV+LASNRRVVC PEY HR+G+P+T Sbjct: 121 VQISFNLTDRVVDLVREGYDISIRIGGAIDPNFVAVKLASNRRVVCGTPEYFHRNGIPKT 180 Query: 181 LDDLAQHNCLAFNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWR 240 L+D+A HNCL+FNLQGGQQRGWYFQQGGKPVI K GNLDCNDGELLHRW SEGLGL WR Sbjct: 181 LEDIADHNCLSFNLQGGQQRGWYFQQGGKPVIIKTAGNLDCNDGELLHRWVSEGLGLGWR 240 Query: 241 STWEIQAQLASGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWN 300 STWEI++QLASGEL+TVLDE+ALPHYDIMAVYPQQRHLPAK RFFID LK +Y Q DYW+ Sbjct: 241 STWEIESQLASGELLTVLDEFALPHYDIMAVYPQQRHLPAKVRFFIDRLKSIYAQPDYWS 300 Query: 301 RA 302 + Sbjct: 301 KG 302 >ref|YP_002983089.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS64417.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 303 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 223/301 (74%), Positives = 259/301 (86%) Query: 1 MDKLKQIEAFVLVVDKGSLAAAALEDKVTPVMMGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF+ VV+ GS+AAAAL VTPVM+GRRI+ALE RLG KL+HR+TR + +TE Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60 Query: 61 QGSVFLDHCRKLLEQMDTAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K L ++D AE +AEGRHKATGHL+VS PAA+GR HVAPHAP FL +P+ Sbjct: 61 QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRT 180 V+ISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA+RLASN+RVVC P Y +HGVPRT Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIRLASNKRVVCGTPAYFSKHGVPRT 180 Query: 181 LDDLAQHNCLAFNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLA+HNCLAFNLQGGQQRGWYFQQ GK V KV GNLDCNDGELLHRW EGLGL WR Sbjct: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGLGWR 240 Query: 241 STWEIQAQLASGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWN 300 STWEIQ +L SG L+TVLD+YALP YDI+AVYPQQR +PAK RFFI++LK VYGQ YW+ Sbjct: 241 STWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKTVYGQAGYWS 300 Query: 301 R 301 R Sbjct: 301 R 301 >ref|YP_001901029.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD28597.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 303 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 223/301 (74%), Positives = 259/301 (86%) Query: 1 MDKLKQIEAFVLVVDKGSLAAAALEDKVTPVMMGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF+ VV+ GS+AAAAL VTPVM+GRRI+ALE RLG KL+HR+TR + +TE Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60 Query: 61 QGSVFLDHCRKLLEQMDTAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K L ++D AE +AEGRHKATGHL+VS PAA+GR HVAPHAP FL +P+ Sbjct: 61 QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRT 180 V+ISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA+RLASN+RVVC P Y +HGVPRT Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIRLASNKRVVCGTPAYFAKHGVPRT 180 Query: 181 LDDLAQHNCLAFNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLA+HNCLAFNLQGGQQRGWYFQQ GK V KV GNLDCNDGELLHRW EGLGL WR Sbjct: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGLGWR 240 Query: 241 STWEIQAQLASGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWN 300 STWEIQ +L SG L+TVLD+YALP YDI+AVYPQQR +PAK RFFI++LK VYGQ YW+ Sbjct: 241 STWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKSVYGQAGYWS 300 Query: 301 R 301 R Sbjct: 301 R 301 >ref|ZP_07675211.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP66386.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 303 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 223/301 (74%), Positives = 259/301 (86%) Query: 1 MDKLKQIEAFVLVVDKGSLAAAALEDKVTPVMMGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF+ VV+ GS+AAAAL VTPVM+GRRI+ALE RLG KL+HR+TR + +TE Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60 Query: 61 QGSVFLDHCRKLLEQMDTAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K L ++D AE +AEGRHKATGHL+VS PAA+GR HVAPHAP FL +P+ Sbjct: 61 QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRT 180 V+ISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA+RLASN+RVVC P Y +HGVPRT Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIRLASNKRVVCGTPAYFAKHGVPRT 180 Query: 181 LDDLAQHNCLAFNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLA+HNCLAFNLQGGQQRGWYFQQ GK V KV GNLDCNDGELLHRW EGLGL WR Sbjct: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGLGWR 240 Query: 241 STWEIQAQLASGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWN 300 STWEIQ +L SG L+TVLD+YALP YDI+AVYPQQR +PAK RFFI++LK VYGQ YW+ Sbjct: 241 STWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKTVYGQAGYWS 300 Query: 301 R 301 R Sbjct: 301 R 301 >ref|ZP_04579737.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gb|EEO30710.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 303 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 220/301 (73%), Positives = 256/301 (85%) Query: 1 MDKLKQIEAFVLVVDKGSLAAAALEDKVTPVMMGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDK+KQIEAFV +KGSLA AAL VTPVM+GRRIDALE+RLG KLMHRTTRHLTLTE Sbjct: 1 MDKIKQIEAFVNATEKGSLAKAALGQGVTPVMLGRRIDALERRLGIKLMHRTTRHLTLTE 60 Query: 61 QGSVFLDHCRKLLEQMDTAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 +G+VF D C+K+L+++D AEK I EG +KATGHL+VS PAA+GR HVAPHAP FLA +P+ Sbjct: 61 RGTVFFDQCKKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPD 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRT 180 V+ISFNL+D+VVDLVREGYDL IRIGG I+PS +AV L SN RVVCAAP+YL +HGVP+ Sbjct: 121 VKISFNLSDQVVDLVREGYDLSIRIGGTIDPSLIAVNLYSNHRVVCAAPDYLEKHGVPKN 180 Query: 181 LDDLAQHNCLAFNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWR 240 L DL+QHNCL FNLQGGQQRGW+F + K VI + GNLDCNDGELLHRW EG GLAWR Sbjct: 181 LKDLSQHNCLTFNLQGGQQRGWHFNENNKTVIIRTAGNLDCNDGELLHRWCLEGYGLAWR 240 Query: 241 STWEIQAQLASGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWN 300 STWEIQ++LASG+LVTVLD+YALP+YDIMAVYPQQR+LP KTR FID+LK Y Q DYW Sbjct: 241 STWEIQSELASGKLVTVLDDYALPNYDIMAVYPQQRYLPLKTRLFIDHLKTTYMQTDYWT 300 Query: 301 R 301 + Sbjct: 301 Q 301