BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3988.p         (169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01220401.1| hypothetical protein P3TCK_11449 [Photobacter...   162   1e-38
ref|ZP_02909730.1| putative lipoprotein [Burkholderia ambifaria ...   158   2e-37
ref|YP_854750.1| putative lipoprotein [Aeromonas hydrophila subs...   138   2e-31
ref|YP_610101.1| hypothetical protein PSEEN4645 [Pseudomonas ent...   123   1e-26
ref|YP_001381493.1| hypothetical protein Anae109_4331 [Anaeromyx...   118   3e-25

>ref|ZP_01220401.1| hypothetical protein P3TCK_11449 [Photobacterium profundum 3TCK]
 gb|EAS43058.1| hypothetical protein P3TCK_11449 [Photobacterium profundum 3TCK]
          Length = 146

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/142 (61%), Positives = 103/142 (72%), Gaps = 1/142 (0%)

Query: 28  KAILFSLALVSALSGCA-VPMADPAKDAQLKEFKIDKDKSAVYIYRNETMGAAVRMDVAV 86
           K +L +  L   ++GCA VPMAD +KDA+LK F+   D + VYIYRNET+GAA+ MDV V
Sbjct: 3   KQLLMAGGLALFMTGCASVPMADSSKDAELKGFEAPSDVAGVYIYRNETLGAAITMDVDV 62

Query: 87  DGAPLGRTAAHTYLYKELTPGKHVITSTAENTETLEIDAKPGVLTYIWQEVKMGILMARN 146
           +  PLG TAA+TYLY EL  GKHVI S AENT TLE+D   G + YIWQEVKMGI+ AR+
Sbjct: 63  NDKPLGSTAANTYLYTELPEGKHVIKSEAENTSTLEVDVANGRIYYIWQEVKMGIMSARS 122

Query: 147 KLHLVDEEEGQAGVKESKLAES 168
           KL  VDE  GQ GV ESKLA S
Sbjct: 123 KLQQVDEVAGQNGVNESKLAVS 144


>ref|ZP_02909730.1| putative lipoprotein [Burkholderia ambifaria MEX-5]
 gb|EDT39142.1| putative lipoprotein [Burkholderia ambifaria MEX-5]
          Length = 154

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/140 (57%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 28  KAILFSLALVSALSGCA-VPMADPAKDAQLKEFKIDKDKSAVYIYRNETMGAAVRMDVAV 86
           K I F ++L+  LSGCA VPM DP +DA+LK F++ ++K+A+Y+YRNE+MG AV+M V +
Sbjct: 5   KLIPFGISLL-ILSGCASVPMGDPQRDAELKTFRVPQEKAAIYVYRNESMGGAVKMPVTL 63

Query: 87  DGAPLGRTAAHTYLYKELTPGKHVITSTAENTETLEIDAKPGVLTYIWQEVKMGILMARN 146
           DG  LG TAA TYLY E+ PG+H + S AEN   L++D   G + Y+WQEVKMG++ ARN
Sbjct: 64  DGKILGHTAAKTYLYSEVDPGRHQLVSKAENDSKLDVDTVAGKIYYVWQEVKMGVMYARN 123

Query: 147 KLHLVDEEEGQAGVKESKLA 166
           KL LVD+  GQ GVKESKLA
Sbjct: 124 KLQLVDDTTGQNGVKESKLA 143


>ref|YP_854750.1| putative lipoprotein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gb|ABK36157.1| putative lipoprotein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 145

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/127 (57%), Positives = 91/127 (71%), Gaps = 1/127 (0%)

Query: 42  GCA-VPMADPAKDAQLKEFKIDKDKSAVYIYRNETMGAAVRMDVAVDGAPLGRTAAHTYL 100
           GCA VPMA+   DAQ K+F   KD + +YIYRNET GAAV+M + VDG  +G T AHTY+
Sbjct: 19  GCASVPMAEATADAQAKQFVAPKDAANLYIYRNETFGAAVKMPLLVDGMAVGDTVAHTYI 78

Query: 101 YKELTPGKHVITSTAENTETLEIDAKPGVLTYIWQEVKMGILMARNKLHLVDEEEGQAGV 160
            K++TPG H ITS +EN  TL +  + G   Y+WQEVKMG+LMAR+KL  V EEEG+ GV
Sbjct: 79  LKQVTPGSHTITSKSENDATLTLSTEAGKNYYVWQEVKMGLLMARSKLSQVSEEEGKQGV 138

Query: 161 KESKLAE 167
            ESKL +
Sbjct: 139 MESKLVK 145


>ref|YP_610101.1| hypothetical protein PSEEN4645 [Pseudomonas entomophila L48]
 emb|CAK17318.1| hypothetical protein; putative signal peptide [Pseudomonas
           entomophila L48]
          Length = 135

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/127 (51%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 40  LSGC-AVPMADPAKDAQLKEFKIDKDKSAVYIYRNETMGAAVRMDVAVDGAPLGRTAAHT 98
           LS C  VP  DP  DAQ+K F+     + VYIYRNETMGAA++ DV +DG  +G TAAHT
Sbjct: 5   LSACVTVPKGDPMVDAQMKRFETVPGMTRVYIYRNETMGAAMKYDVLIDGRMIGATAAHT 64

Query: 99  YLYKELTPGKHVITSTAENTETLEIDAKPGVLTYIWQEVKMGILMARNKLHLVDEEEGQA 158
           YL  E+ PG H I S A     ++++A+PG   +IWQE+KMG   A  KLH+V E  G+ 
Sbjct: 65  YLVAEVPPGPHTIASDAGTLRVIKVEAQPGKNLFIWQEMKMGFGAADAKLHVVSEAVGRK 124

Query: 159 GVKESKL 165
           GV E+KL
Sbjct: 125 GVLETKL 131


>ref|YP_001381493.1| hypothetical protein Anae109_4331 [Anaeromyxobacter sp. Fw109-5]
 gb|ABS28509.1| hypothetical protein Anae109_4331 [Anaeromyxobacter sp. Fw109-5]
          Length = 185

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/143 (46%), Positives = 91/143 (63%), Gaps = 3/143 (2%)

Query: 28  KAILFSLALVSALSGCA--VPMADPAKDAQLKEFKIDKDKSAVYIYRNETMGAAVRMDVA 85
           K ++  LAL+ A +GCA  VPMA PA+D   K+F   +  + +Y+YR+E  G AV M V 
Sbjct: 4   KTLVLGLALMMA-TGCAAHVPMAPPAQDLAAKQFAPAQQTANLYVYRHEQFGYAVSMGVL 62

Query: 86  VDGAPLGRTAAHTYLYKELTPGKHVITSTAENTETLEIDAKPGVLTYIWQEVKMGILMAR 145
           +DG  LG TAA T+L+  + PG+H + S AENT  +   A+PG   ++WQEVKMG    R
Sbjct: 63  LDGTWLGDTAAKTFLHLPIPPGEHRVISKAENTAEIVFAAEPGKNYFVWQEVKMGFAAPR 122

Query: 146 NKLHLVDEEEGQAGVKESKLAES 168
           + LHLVDE EG+A V +  LA +
Sbjct: 123 SALHLVDEAEGRAAVTQCSLATT 145