BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3987.p (171 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004040738.1| hypothetical protein MPQ_2357 [Methylovorus ... 140 5e-32 ref|YP_003052183.1| hypothetical protein Msip34_2419 [Methylovor... 139 1e-31 ref|ZP_01612303.1| hypothetical protein ATW7_07924 [Alteromonada... 103 9e-21 ref|ZP_08568232.1| hypothetical protein SOHN41_03715 [Shewanella... 96 2e-18 ref|YP_001762730.1| hypothetical protein Swoo_4383 [Shewanella w... 86 2e-15 >ref|YP_004040738.1| hypothetical protein MPQ_2357 [Methylovorus sp. MP688] gb|ADQ85502.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 337 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 97/153 (63%) Query: 19 SLKQTLPENYQGPKATIKDSTKRHSSQKADIFYIDTVDGESVLTSPMRTRAENQGKFLFM 78 +L + P +Y A IKDS + +SS KAD F + + + S +T NQG+ L M Sbjct: 185 TLSKPFPADYDFSTAVIKDSVQTYSSSKADFFVVSRIQQAATNNSLQKTLQLNQGRGLTM 244 Query: 79 RVYLISHDFPIQPTTLGIRGETQYAAPILALTNPVYRVEGKVQFTPEAGKVYVVKGELGE 138 YL+ + P Q +L + G T YAAPILALTN VY ++G V+FTP+A KVYVVKG LGE Sbjct: 245 TPYLVDQEVPTQKVSLQLVGRTHYAAPILALTNTVYEIKGDVEFTPQANKVYVVKGVLGE 304 Query: 139 DYSAVWIEEEQTHTVIDKKIETNGSAKAGAIQK 171 DYSA+W+EE+ T ++ KIE +GS G ++K Sbjct: 305 DYSAIWLEEQGTGNIVGNKIEKHGSTALGFLEK 337 >ref|YP_003052183.1| hypothetical protein Msip34_2419 [Methylovorus glucosetrophus SIP3-4] gb|ACT51656.1| hypothetical protein Msip34_2419 [Methylovorus glucosetrophus SIP3-4] Length = 337 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 70/153 (45%), Positives = 97/153 (63%) Query: 19 SLKQTLPENYQGPKATIKDSTKRHSSQKADIFYIDTVDGESVLTSPMRTRAENQGKFLFM 78 +L + P +Y A IKDS + +SS KAD F + + + S +T NQG+ L M Sbjct: 185 TLSKPFPADYDFSTAVIKDSVQTYSSSKADFFVVSRLQQAATNNSLQKTLQLNQGRGLTM 244 Query: 79 RVYLISHDFPIQPTTLGIRGETQYAAPILALTNPVYRVEGKVQFTPEAGKVYVVKGELGE 138 YL+ + P Q ++ + G T YAAPILALTN VY ++G V+FTP+A KVYVVKG LGE Sbjct: 245 TPYLVDQEVPTQKVSVQLLGRTHYAAPILALTNTVYEIKGDVEFTPQANKVYVVKGVLGE 304 Query: 139 DYSAVWIEEEQTHTVIDKKIETNGSAKAGAIQK 171 DYSA+W+EE+ T ++ KIE +GS G ++K Sbjct: 305 DYSAIWLEEQGTGNIVGNKIEKHGSTALGILEK 337 >ref|ZP_01612303.1| hypothetical protein ATW7_07924 [Alteromonadales bacterium TW-7] gb|EAW28497.1| hypothetical protein ATW7_07924 [Alteromonadales bacterium TW-7] Length = 162 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 84/159 (52%) Query: 3 LTGLALATAIALTGCASLKQTLPENYQGPKATIKDSTKRHSSQKADIFYIDTVDGESVLT 62 + L A L+GCA++ PENY GP A I + R ++FY++ ++ + ++ Sbjct: 1 MKNLVFALVFILSGCATIHDPYPENYSGPSALIGSTENRIDQSTVELFYLEKINNKMIVN 60 Query: 63 SPMRTRAENQGKFLFMRVYLISHDFPIQPTTLGIRGETQYAAPILALTNPVYRVEGKVQF 122 S +R+ QG+ L LI P+ T I G T +AAPI L + V G + F Sbjct: 61 SMGTSRSATQGQGLSFTTQLIETAVPVLSQTFTIVGATAHAAPIQTLLSDNNTVRGDITF 120 Query: 123 TPEAGKVYVVKGELGEDYSAVWIEEEQTHTVIDKKIETN 161 TP+ Y+V+G E YSAVW+ ++T +I KKIE++ Sbjct: 121 TPQPHTEYIVEGTFSESYSAVWLSNKETGQIIGKKIESS 159 >ref|ZP_08568232.1| hypothetical protein SOHN41_03715 [Shewanella sp. HN-41] gb|EGM68223.1| hypothetical protein SOHN41_03715 [Shewanella sp. HN-41] Length = 170 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 12 IALTGCASLKQTLPENYQGPKATIKDSTKRHSSQKADIFYIDTVDGESVLTSPMRTRAEN 71 I L GC++ ++P+ Y G AT+ D+ R + A+IFYID ++ + V S M T+ + Sbjct: 11 IILAGCSATSPSVPKGYVGETATVDDTLSRIDNSSANIFYIDKINDKGVHNSLMATQNAS 70 Query: 72 QGKFLFMRVYLISHDFPIQPTTLGIRGETQYAAPILAL-TNPVYRVEGKVQFTPEAGKVY 130 G+ L + S QP L I + AAP+L + ++ + VEG +QFTP+A + Y Sbjct: 71 MGQGLRLTTLGASRAVTAQPIQLHIAAQVYSAAPVLQIFSDKNHFVEGTIQFTPKANENY 130 Query: 131 VVKGELGEDYSAVWIEE---EQTHTVIDKKIE 159 +V G+L + YSAVW+E E +I+KKI+ Sbjct: 131 IVSGKLSDIYSAVWLENTKGEVVSDIIEKKIK 162 >ref|YP_001762730.1| hypothetical protein Swoo_4383 [Shewanella woodyi ATCC 51908] gb|ACA88635.1| hypothetical protein Swoo_4383 [Shewanella woodyi ATCC 51908] Length = 363 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 3/154 (1%) Query: 15 TGCASLKQTLPENYQGPKATIKDSTKRHSSQKADIFYIDTVDGESVLTSPMRTRAENQGK 74 T C S + ++P+ Y G TI D+ + A FY+ ++G+ + + T + G+ Sbjct: 14 TACVSYESSIPKGYTGEAVTISDTYSNKTLSSAHFFYVKEMNGKPMYNAVRSTNGASSGQ 73 Query: 75 FLFMRVYLISHDFPIQPTTLGIRGETQYAAPILALTNP--VYRVEGKVQFTPEAGKVYVV 132 + S P TL + GE AAPIL + N Y +EG+++FTP + Y V Sbjct: 74 GAKLVAVGYSRKVPKAKLTLKVAGEVFRAAPILYMFNADENYAIEGEIEFTPNKDEFYFV 133 Query: 133 KGELGEDYSAVWIEEEQTHTVIDKKIETNGSAKA 166 KGEL E YSAVWIE+ VI K E S KA Sbjct: 134 KGELSETYSAVWIEDIHG-KVISKLEEGEKSDKA 166