BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3986.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_642225.2| chemotaxis protein [Xanthomonas axonopodis pv. ...    85   4e-15
ref|YP_004851485.1| methyl-accepting chemotaxis protein [Xanthom...    80   8e-14
gb|AAM36761.1| chemotaxis protein [Xanthomonas axonopodis pv. ci...    80   9e-14
ref|ZP_08186612.1| methyl-accepting chemotaxis protein [Xanthomo...    80   1e-13
ref|ZP_06729779.1| methyl-accepting chemotaxis protein [Xanthomo...    80   1e-13

>ref|NP_642225.2| chemotaxis protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 911

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 63/76 (82%)

Query: 1   MHDVVQSVQRVNAIITEISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAM 60
           M ++V SVQRV  I+ EISAAS+EQSSGIE+++  +T MDE+TQQNAALVEEA AAA+AM
Sbjct: 779 MSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAM 838

Query: 61  RHQAGQLQEAVEVFRL 76
             QAGQL EAV VFRL
Sbjct: 839 EEQAGQLTEAVAVFRL 854


>ref|YP_004851485.1| methyl-accepting chemotaxis protein [Xanthomonas axonopodis pv.
           citrumelo F1]
 gb|AEO42187.1| methyl-accepting chemotaxis protein [Xanthomonas axonopodis pv.
           citrumelo F1]
          Length = 793

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 1   MHDVVQSVQRVNAIITEISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAM 60
           M D+V SVQRV  I+ EISAAS+EQSSGIE++++ IT MDE+TQQNAALVEEA AAA++M
Sbjct: 663 MADIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEATAAARSM 722

Query: 61  RHQAGQLQEAVEVFRLE 77
             QAG L EAV VF+L+
Sbjct: 723 EEQAGHLAEAVSVFKLD 739


>gb|AAM36761.1| chemotaxis protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 686

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 63/76 (82%)

Query: 1   MHDVVQSVQRVNAIITEISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAM 60
           M ++V SVQRV  I+ EISAAS+EQSSGIE+++  +T MDE+TQQNAALVEEA AAA+AM
Sbjct: 554 MSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAM 613

Query: 61  RHQAGQLQEAVEVFRL 76
             QAGQL EAV VFRL
Sbjct: 614 EEQAGQLTEAVAVFRL 629


>ref|ZP_08186612.1| methyl-accepting chemotaxis protein [Xanthomonas perforans 91-118]
 gb|EGD15823.1| methyl-accepting chemotaxis protein [Xanthomonas perforans 91-118]
          Length = 793

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 1   MHDVVQSVQRVNAIITEISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAM 60
           M D+V SVQRV  I+ EISAAS+EQSSGIE++++ IT MDE+TQQNAALVEEA AAA++M
Sbjct: 663 MADIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEATAAARSM 722

Query: 61  RHQAGQLQEAVEVFRLE 77
             QAG L EAV VF+L+
Sbjct: 723 EEQAGHLAEAVSVFKLD 739


>ref|ZP_06729779.1| methyl-accepting chemotaxis protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gb|EFF49103.1| methyl-accepting chemotaxis protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 793

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 1   MHDVVQSVQRVNAIITEISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAM 60
           M D+V SVQRV  I+ EISAAS+EQSSGIE++++ IT MDE+TQQNAALVEEA AAA++M
Sbjct: 663 MADIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEATAAARSM 722

Query: 61  RHQAGQLQEAVEVFRLE 77
             QAG L EAV VF+L+
Sbjct: 723 EEQAGHLAEAVSVFKLD 739