BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3985.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02911441.1| hypothetical protein BamMEX5DRAFT_6795 [Burkh...    62   3e-08
ref|ZP_02894550.1| hypothetical protein BamIOP4010DRAFT_6614 [Bu...    60   9e-08
ref|YP_540650.1| hypothetical protein UTI89_C1641 [Escherichia c...    54   9e-06
gb|EGB79156.1| Hok/gef family protein [Escherichia coli MS 57-2]       54   9e-06

>ref|ZP_02911441.1| hypothetical protein BamMEX5DRAFT_6795 [Burkholderia ambifaria
           MEX-5]
 gb|EDT37424.1| hypothetical protein BamMEX5DRAFT_6795 [Burkholderia ambifaria
           MEX-5]
          Length = 358

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 64/95 (67%)

Query: 12  NAAFCWVDSSMRVMTRWISSMPLLCSRLAALISVMMALTRCTLCTTSCMVLPACCTSVAP 71
           +AAFC V  S+    R   SMP+ CS  AALIS MM++TR T CT S +V PA  TS  P
Sbjct: 32  SAAFCCVTESIWPTARLTCSMPVDCSSDAALISPMMSVTRRTACTISSIVEPARATSADP 91

Query: 72  LSMRPTESLISTLISRAAVALRCASDRTSEATTAK 106
           LS  P ES IS LIS AA+ALR AS+RTS ATTAK
Sbjct: 92  LSTFPAESPISCLISFAALALRWASERTSPATTAK 126


>ref|ZP_02894550.1| hypothetical protein BamIOP4010DRAFT_6614 [Burkholderia ambifaria
           IOP40-10]
 gb|EDS99871.1| hypothetical protein BamIOP4010DRAFT_6614 [Burkholderia ambifaria
           IOP40-10]
          Length = 372

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 63/95 (66%)

Query: 12  NAAFCWVDSSMRVMTRWISSMPLLCSRLAALISVMMALTRCTLCTTSCMVLPACCTSVAP 71
           +AAFC V  S+    R   SMP+ CS  AALIS MM++TR T CT S +V PA  TS  P
Sbjct: 32  SAAFCCVTESIWPTARLTCSMPVDCSSDAALISPMMSVTRRTACTISSIVEPARATSADP 91

Query: 72  LSMRPTESLISTLISRAAVALRCASDRTSEATTAK 106
           LS    ES IS LIS AA+ALR AS+RTS ATTAK
Sbjct: 92  LSTFSAESPISCLISFAALALRWASERTSPATTAK 126


>ref|YP_540650.1| hypothetical protein UTI89_C1641 [Escherichia coli UTI89]
 gb|ABE07119.1| hypothetical protein Hok [Escherichia coli UTI89]
          Length = 163

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/102 (49%), Positives = 57/102 (55%)

Query: 4   AAAAASSTNAAFCWVDSSMRVMTRWISSMPLLCSRLAALISVMMALTRCTLCTTSCMVLP 63
           AA  ASST  AFC V  S+  +      MP LCS  A  IS M+ +T  T  T   M+ P
Sbjct: 21  AAVEASSTREAFCCVTLSISEIAWLTCVMPRLCSPEAVAISCMICVTLATASTIVHMIFP 80

Query: 64  ACCTSVAPLSMRPTESLISTLISRAAVALRCASDRTSEATTA 105
           A  TS  P S+  T+SLI   IS AA ALR AS RTS ATTA
Sbjct: 81  AVATSSDPRSINLTDSLIKPSISFAAWALRLASVRTSLATTA 122


>gb|EGB79156.1| Hok/gef family protein [Escherichia coli MS 57-2]
          Length = 164

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/102 (49%), Positives = 57/102 (55%)

Query: 4   AAAAASSTNAAFCWVDSSMRVMTRWISSMPLLCSRLAALISVMMALTRCTLCTTSCMVLP 63
           AA  ASST  AFC V  S+  +      MP LCS  A +IS M+ +T  T  T   MV P
Sbjct: 22  AAVEASSTREAFCCVTLSISEIAWLTCVMPRLCSSEAMVISCMICVTLATASTIVHMVFP 81

Query: 64  ACCTSVAPLSMRPTESLISTLISRAAVALRCASDRTSEATTA 105
           A  TS  P S+  T+SLI   IS A  ALR AS RTS ATTA
Sbjct: 82  AVATSSDPRSINLTDSLIKPSISFAVWALRLASVRTSLATTA 123