BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3982.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153909.1| hypothetical protein Varpa_1588 [Variovorax ... 466 e-129 ref|ZP_02889254.1| conserved hypothetical protein [Burkholderia ... 392 e-107 ref|ZP_03573296.1| conserved hypothetical protein [Burkholderia ... 387 e-105 ref|YP_001583450.1| hypothetical protein Bmul_3474 [Burkholderia... 387 e-105 ref|ZP_03582273.1| conserved hypothetical protein [Burkholderia ... 386 e-105 >ref|YP_004153909.1| hypothetical protein Varpa_1588 [Variovorax paradoxus EPS] gb|ADU35798.1| hypothetical protein Varpa_1588 [Variovorax paradoxus EPS] Length = 387 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 223/371 (60%), Positives = 276/371 (74%), Gaps = 6/371 (1%) Query: 14 PAPLKVGVSIYLRDERQSLWENGIGQNCLFLAMLFMRSPCVAQTYLVAGGHAGLIHS-SA 72 PA L+VGVSI++R QSLWENG+ QNCLFL ML MRSP V T LVAGG G + Sbjct: 13 PAKLRVGVSIFIRKGEQSLWENGVYQNCLFLVMLLMRSPRVGSTVLVAGGGDGGPADATN 72 Query: 73 MLAQSPVPVISMADAMHTLDVMIEMGVQLDREWSVAFRSRGGRIITMRVGNDYVLDVERM 132 LA SPVP+I MA A LD+MIEM QL REWSVAF+ RGG+I++MRVGNDYV+D+ERM Sbjct: 73 FLADSPVPIIDMATAAQELDLMIEMSAQLAREWSVAFKERGGKIVSMRVGNDYVIDIERM 132 Query: 133 IHNQSPAMLVSGAPYDEVWTIAEYVQNCAPYYQANFRAPVRIMPHLWSPVLLERSLSELA 192 I N+ MLVSGAPYDEVWT+ EY +C PY+ + FRAPVR+MPHLWSP++LE++++ A Sbjct: 133 IFNKPHGMLVSGAPYDEVWTLPEYEVSCKPYFASTFRAPVRLMPHLWSPMVLEKAMAR-A 191 Query: 193 PG----KHIGYVPGRARWRIGMFEPNVSMVKTSFISMLCCEAAHRANRQVLEKVWVYNGQ 248 G K YVPGR WR+ +FEPN+ MVKTSFI ML CEAAHRA ++LE+VWVYN Sbjct: 192 EGNDKDKGFDYVPGRKHWRVAIFEPNICMVKTSFIPMLGCEAAHRAQPRLLERVWVYNSF 251 Query: 249 VLRERPGFINFSLGLDIARHGLVSLEGRHPFVEAMIDRVDAIVTHQWENAQNYIYYEALY 308 L+E+P F+ F+ L+I +HGL + EGR P + + VDA+ H WENAQNY+YYEALY Sbjct: 252 HLKEKPLFVGFAQSLNIVQHGLATFEGRFPLYQVLPGNVDAVFAHHWENAQNYLYYEALY 311 Query: 309 GNYPLIHNSHLLGDCGYRYSEFDAEEGGRALLQAFAEHDNNLDDYRRRSQAYLQSVDPHN 368 G YPLIHNSHL+GDCGYRY +FD EEGGRAL +AFA HD NL YR R++ + +DP Sbjct: 312 GGYPLIHNSHLIGDCGYRYHDFDCEEGGRALQEAFATHDANLPAYRERARQLVARLDPEG 371 Query: 369 VDNIRIYSEAL 379 +N+RIY+ A+ Sbjct: 372 EENVRIYTAAI 382 >ref|ZP_02889254.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|EDT05189.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 385 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 193/372 (51%), Positives = 253/372 (68%), Gaps = 1/372 (0%) Query: 10 PMLKPAPLKVGVSIYLRDERQSLWENGIGQNCLFLAMLFMRSPCVAQTYLVAGGHAGLIH 69 P + L+VG+SI ++SLW +G+ QN F+A RS V V Sbjct: 8 PQARRNRLRVGISIAPARRQESLWSSGLAQNGFFVAKALARSEYVQSVSWVCTAETETES 67 Query: 70 SSAMLAQSPVPVISMADAMHTLDVMIEMGVQLDREWSVAFRSRGGRIITMRVGNDYVLDV 129 + + VPV+ M A LDV+IEMG QL+R+W VAFR RGG+I++MRVG+DYV D+ Sbjct: 68 TLTLWDGGSVPVMDMTQAAADLDVVIEMGAQLERDWGVAFRERGGKIVSMRVGHDYVSDI 127 Query: 130 ERMIHNQSPAML-VSGAPYDEVWTIAEYVQNCAPYYQANFRAPVRIMPHLWSPVLLERSL 188 E M+ +++ L ++GAPY EVWT+ ++V++ PY FR PVR+MPHLWSP LLER Sbjct: 128 ECMMFDRATQGLPIAGAPYHEVWTLPQHVKSGVPYLSGVFRVPVRVMPHLWSPFLLERQT 187 Query: 189 SELAPGKHIGYVPGRARWRIGMFEPNVSMVKTSFISMLCCEAAHRANRQVLEKVWVYNGQ 248 L G+ GY PGR RWRIG+FEPNV MVKTSFI +LCCEAAHRA+ +LE+VW +N Sbjct: 188 EGLPQGRRFGYQPGRRRWRIGIFEPNVCMVKTSFIPLLCCEAAHRADPALLERVWAFNTF 247 Query: 249 VLRERPGFINFSLGLDIARHGLVSLEGRHPFVEAMIDRVDAIVTHQWENAQNYIYYEALY 308 L++ GF + LDI RHGL S + PF + M DAIV+HQWE+AQ+++YYEALY Sbjct: 248 DLKDHAGFKSLLCSLDIVRHGLASFDQHFPFHDVMAGDADAIVSHQWEHAQDHLYYEALY 307 Query: 309 GNYPLIHNSHLLGDCGYRYSEFDAEEGGRALLQAFAEHDNNLDDYRRRSQAYLQSVDPHN 368 G YPLIHNS+L+GDCGYRY FD EGGRAL +AF EHD NL+ YRRR++ +L+ +DP + Sbjct: 308 GGYPLIHNSYLIGDCGYRYHAFDCVEGGRALRRAFVEHDANLETYRRRARTFLRRLDPES 367 Query: 369 VDNIRIYSEALL 380 N+R YSEAL+ Sbjct: 368 EANVRAYSEALV 379 >ref|ZP_03573296.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] ref|ZP_03578948.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE06379.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE12000.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 384 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 190/367 (51%), Positives = 248/367 (67%), Gaps = 1/367 (0%) Query: 17 LKVGVSIYLRDERQSLWENGIGQNCLFLAMLFMRSPCVAQTYLVAGGHAGLIHSSAMLAQ 76 L VGVS+Y+R QSLWENGI QNCL L +L +SP VA+ +V GG A L ML + Sbjct: 16 LVVGVSLYVRGAGQSLWENGIFQNCLLLILLLRQSPLVAEAVMVNGG-AQLADPQMMLGE 74 Query: 77 SPVPVISMADAMHTLDVMIEMGVQLDREWSVAFRSRGGRIITMRVGNDYVLDVERMIHNQ 136 VP++SM +A+ DV+IEM Q ++ AFR RGG+++TMRVGNDYV+D+ER + N+ Sbjct: 75 WDVPLLSMDEALQRCDVLIEMSAQFGADYLRAFRERGGKVVTMRVGNDYVIDIERAMFNK 134 Query: 137 SPAMLVSGAPYDEVWTIAEYVQNCAPYYQANFRAPVRIMPHLWSPVLLERSLSELAPGKH 196 L SGAPYD VWTI E+ ++C YYQ RAPV I+PH+W P+L +++ + L PG Sbjct: 135 PSGFLFSGAPYDAVWTIPEFERSCLHYYQTGLRAPVTIVPHIWHPMLFDKARATLGPGLS 194 Query: 197 IGYVPGRARWRIGMFEPNVSMVKTSFISMLCCEAAHRANRQVLEKVWVYNGQVLRERPGF 256 GY PGR RWR+ MFEPN+ MVKTS I ML E A+RA L+ V V N ++E F Sbjct: 195 YGYRPGRPRWRVTMFEPNICMVKTSIIPMLVTEEAYRAQPAFLDIVRVCNTLHMKEHATF 254 Query: 257 INFSLGLDIARHGLVSLEGRHPFVEAMIDRVDAIVTHQWENAQNYIYYEALYGNYPLIHN 316 ++F+ LDI HG+ + E R+ E M DA+V+H WENAQNY+YYE LYG+YPLIHN Sbjct: 255 VHFAKSLDIVNHGITTFESRYAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGDYPLIHN 314 Query: 317 SHLLGDCGYRYSEFDAEEGGRALLQAFAEHDNNLDDYRRRSQAYLQSVDPHNVDNIRIYS 376 S LG GY Y +FD + GGRALLQAFAEHD NLD YR +S+ L SV +N DN+ Y+ Sbjct: 315 SPFLGKAGYYYPDFDCQAGGRALLQAFAEHDANLDAYREQSKHVLDSVSIYNPDNVAAYT 374 Query: 377 EALLEVW 383 +A+ ++ Sbjct: 375 DAIAALY 381 >ref|YP_001583450.1| hypothetical protein Bmul_3474 [Burkholderia multivorans ATCC 17616] ref|YP_001949422.1| hypothetical protein BMULJ_05042 [Burkholderia multivorans ATCC 17616] gb|ABX17158.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] dbj|BAG46886.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 384 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 189/367 (51%), Positives = 249/367 (67%), Gaps = 1/367 (0%) Query: 17 LKVGVSIYLRDERQSLWENGIGQNCLFLAMLFMRSPCVAQTYLVAGGHAGLIHSSAMLAQ 76 L VGVS+Y+R QSLWENGI QNCL L +L +SP VA+ +V GG A L ML + Sbjct: 16 LVVGVSLYVRGAGQSLWENGIFQNCLLLILLLRQSPLVAEAVMVNGG-AQLADPQMMLGE 74 Query: 77 SPVPVISMADAMHTLDVMIEMGVQLDREWSVAFRSRGGRIITMRVGNDYVLDVERMIHNQ 136 VP++SM +A+ DV+IEM Q ++ AFR RGG+++TMRVGNDYV+D+ER + N+ Sbjct: 75 WDVPLLSMDEALQRCDVLIEMSAQFGADYLRAFRERGGKVVTMRVGNDYVIDIERAMFNK 134 Query: 137 SPAMLVSGAPYDEVWTIAEYVQNCAPYYQANFRAPVRIMPHLWSPVLLERSLSELAPGKH 196 L SGAPYD VWTI E+ ++C YYQ RAPV I+PH+W P+L +++ + L PG Sbjct: 135 PSGFLFSGAPYDAVWTIPEFERSCLHYYQTGLRAPVTIVPHIWHPMLFDKARATLGPGLS 194 Query: 197 IGYVPGRARWRIGMFEPNVSMVKTSFISMLCCEAAHRANRQVLEKVWVYNGQVLRERPGF 256 GY PGR+RWR+ MFEPN+ MVKTS I ML E A+RA L+ V V N ++E F Sbjct: 195 YGYRPGRSRWRVTMFEPNICMVKTSIIPMLVTEEAYRAQPAFLDIVRVCNTLHMKEHATF 254 Query: 257 INFSLGLDIARHGLVSLEGRHPFVEAMIDRVDAIVTHQWENAQNYIYYEALYGNYPLIHN 316 ++F+ LDI HG+ + E R+ E M DA+V+H WENAQNY+YYE LYG+YPLIHN Sbjct: 255 VHFAKSLDIVNHGITTFESRYAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGDYPLIHN 314 Query: 317 SHLLGDCGYRYSEFDAEEGGRALLQAFAEHDNNLDDYRRRSQAYLQSVDPHNVDNIRIYS 376 S LG GY Y +FD + GGRALLQAFAEHD NLD YR +S+ L SV +N +N+ Y+ Sbjct: 315 SPFLGKAGYYYPDFDCQAGGRALLQAFAEHDANLDAYREQSKHVLDSVSIYNPENVAAYT 374 Query: 377 EALLEVW 383 +A+ ++ Sbjct: 375 DAIAALY 381 >ref|ZP_03582273.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gb|EEE02446.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 384 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 189/367 (51%), Positives = 247/367 (67%), Gaps = 1/367 (0%) Query: 17 LKVGVSIYLRDERQSLWENGIGQNCLFLAMLFMRSPCVAQTYLVAGGHAGLIHSSAMLAQ 76 L VGVS+Y+R QSLWENGI QNCL L +L +SP VA+ +V GG L ML + Sbjct: 16 LVVGVSLYVRGAGQSLWENGIFQNCLLLILLLRQSPLVAEAVMVNGGEQ-LADPQMMLGE 74 Query: 77 SPVPVISMADAMHTLDVMIEMGVQLDREWSVAFRSRGGRIITMRVGNDYVLDVERMIHNQ 136 VP++SM +A+ DV+IEM Q ++ AFR RGG+++TMRVGNDYV+D+ER + N+ Sbjct: 75 WDVPLLSMDEALQRCDVLIEMSAQFGADYLRAFRERGGKVVTMRVGNDYVIDIERAMFNK 134 Query: 137 SPAMLVSGAPYDEVWTIAEYVQNCAPYYQANFRAPVRIMPHLWSPVLLERSLSELAPGKH 196 L SGAPYD VWTI E+ ++C YYQ RAPV I+PH+W P+L +++ + L PG Sbjct: 135 PSGFLFSGAPYDAVWTIPEFERSCLHYYQTGLRAPVTIVPHIWHPMLFDKARATLGPGLS 194 Query: 197 IGYVPGRARWRIGMFEPNVSMVKTSFISMLCCEAAHRANRQVLEKVWVYNGQVLRERPGF 256 GY PGR RWR+ MFEPN+ MVKTS I ML E A+RA L+ V V N ++E F Sbjct: 195 YGYRPGRPRWRVTMFEPNICMVKTSIIPMLVTEEAYRAQPAFLDIVRVCNTVHMKEHATF 254 Query: 257 INFSLGLDIARHGLVSLEGRHPFVEAMIDRVDAIVTHQWENAQNYIYYEALYGNYPLIHN 316 ++F+ LDI HG+ + E R+ E M DA+V+H WENAQNY+YYE LYG+YPLIHN Sbjct: 255 VHFAKSLDIVNHGITTFESRYAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGDYPLIHN 314 Query: 317 SHLLGDCGYRYSEFDAEEGGRALLQAFAEHDNNLDDYRRRSQAYLQSVDPHNVDNIRIYS 376 S LG GY Y +FD + GGRALLQAFAEHD NLD YR +S+ L SV +N DN+ Y+ Sbjct: 315 SPFLGKAGYYYPDFDCQAGGRALLQAFAEHDANLDAYREQSKHVLDSVSIYNPDNVAAYT 374 Query: 377 EALLEVW 383 +A+ ++ Sbjct: 375 DAIAALY 381