BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3980.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_373837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [... 125 1e-26 ref|YP_001863368.1| PpiC-type peptidyl-prolyl cis-trans isomeras... 123 3e-26 ref|YP_586825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [... 120 2e-25 ref|YP_001812411.1| PpiC-type peptidyl-prolyl cis-trans isomeras... 120 3e-25 ref|YP_002232721.1| putative peptidyl-prolyl cis-trans isomerase... 120 3e-25 >ref|YP_373837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] gb|ABB13193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] Length = 236 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 7/220 (3%) Query: 51 LQSVGLEDTPQNRQDVRKRMAAGDGLLRAATQAGYQNRPEVRDAMEQAAQNVLVQSYLRD 110 L++ G D+PQ RQ ++ ++ + +AA +A Y ++PEV+ A++QA N VQ YLRD Sbjct: 9 LRASGQPDSPQIRQAIKNQLITRVLVQQAAEKANYADKPEVKAAVQQAKANAEVQLYLRD 68 Query: 111 QLAKVAPPTEAQIRDAY----ATLSRQMEYRVRLIETADEATAQLMQQRLSQGWSFAGLV 166 + K P TE Q++ Y ATL + EY+ RLI D TA + L G SF GL Sbjct: 69 NV-KPEPVTEEQVKARYDELVATLGKN-EYKPRLIIVQDPVTAATVLSELKAGKSFEGLA 126 Query: 167 RRFSIGANAAGGGEMPWVTFATPVDEKELRGALPLPLAQAMVQLKVGQVWPQPIPMGTHW 226 R++S+ + GGE+PWV+F TPV E + G LPLP+AQA+ +LKVG IP+ Sbjct: 127 RQYSMAPSRDTGGELPWVSFHTPVTEGKTSG-LPLPIAQALEKLKVGAATSDSIPVDGVR 185 Query: 227 VLARLEARRPYSPPPLEQAAPLLRAQLWQAAREQARDALI 266 + +L+A+RP P A P L+ QL AA E+A +I Sbjct: 186 AIVKLDAKRPTQVPGFATAKPGLQQQLQAAAVEKASAQMI 225 >ref|YP_001863368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] gb|ACC76318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] Length = 284 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 41 ALQEQRIRAALQSVGLEDTPQNRQDVRKRMAAGDGLLRAATQAGYQNRPEVRDAMEQAAQ 100 ++ + ++ AA+Q+ DTPQ RQ ++ ++ + + A +AGY N+PEV+ + Sbjct: 47 SIPQAQLDAAVQATRQPDTPQLRQALKAQLITRELFRQNAEKAGYGNKPEVQQVINATKV 106 Query: 101 NVLVQSYLRDQLAKVAPPTEAQIRDAYATLSRQM---EYRVRLIETADEATAQLMQQRLS 157 N Q YL+D + A T+AQ++ Y + + +YR R+I AD TA + L Sbjct: 107 NAESQLYLKDNIHPDAV-TDAQVKSRYDEIVASLGKDDYRPRIIAVADAMTAATVLGGLK 165 Query: 158 QGWSFAGLVRRFSIGANAAGGGEMPWVTFATPVDEKELRGALPLPLAQAMVQLKVGQVWP 217 G SF L R++SI + A GGE+PWV+F P E + G LPLP+AQA+ QL VG V P Sbjct: 166 AGKSFDVLARQYSITPDKANGGELPWVSFKAPAAEGKTSG-LPLPVAQALTQLPVGGVTP 224 Query: 218 QPIPMGTHWVLARLEARRPYSPPPLEQAAPLLRAQLWQAAREQA 261 +P+ +G V+ +L+A+RP P +Q +R QL A E+A Sbjct: 225 EPVIVGNARVIVKLDAKRPTQVPKFDQVKDTIRQQLQALALEKA 268 >ref|YP_586825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] gb|ABF11556.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] Length = 291 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 131/235 (55%), Gaps = 5/235 (2%) Query: 42 LQEQRIRAALQSVGLEDTPQNRQDVRKRMAAGDGLLRAATQAGYQNRPEVRDAMEQAAQN 101 + + ++ AL+ DTPQ RQ + + + L ++A + GY RPEV A A + Sbjct: 55 IAQTQLDDALRVARQADTPQMRQFFTQELIVREVLRQSAEKDGYDRRPEVVQAANTAKAS 114 Query: 102 VLVQSYLRDQLAKVAPPTEAQIRDAYATLSRQM---EYRVRLIETADEATAQLMQQRLSQ 158 + YLRD L ++ P T+AQ++ Y + M EY+VR+I AD+ TA+ + ++L Sbjct: 115 AEAELYLRDNL-RLDPITDAQVKARYDEVVSMMGKEEYKVRIISVADDRTARTVLEKLRA 173 Query: 159 GWSFAGLVRRFSIGANAAGGGEMPWVTFATPVDEKELRGALPLPLAQAMVQLKVGQVWPQ 218 G SF LVR +S+ ++ GGGEMPW+TF PV E + +G +P+ +A+A+ L+VG V + Sbjct: 174 GVSFDELVRMYSVASSKEGGGEMPWITFRVPVVEGKSQG-VPVAVAEAVSHLEVGAVTQE 232 Query: 219 PIPMGTHWVLARLEARRPYSPPPLEQAAPLLRAQLWQAAREQARDALINQAAVAA 273 P+ + V+ RL+A+R P + +R QL A +AR ++ AA Sbjct: 233 PVVVDNLRVIVRLDAKRATQVPAFDDVKDDIRRQLHIVALNKARADVVGNLMQAA 287 >ref|YP_001812411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] gb|ACB69162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] Length = 282 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 138/260 (53%), Gaps = 14/260 (5%) Query: 14 WMAAACFYGGTACGQDVSVQAASPAQ---------SALQEQRIRAALQSVGLEDTPQNRQ 64 ++AA+ Y G AC A+S + +A+ + + L++ DTPQ RQ Sbjct: 9 FIAASALYLGIACVAQAQTPASSTSPVGVVATVNGTAITQAEVDTVLRASRQPDTPQVRQ 68 Query: 65 DVRKRMAAGDGLLRAATQAGYQNRPEVRDAMEQAAQNVLVQSYLRDQLAKVAPPTEAQIR 124 ++ ++ A + +AA +A Y ++PEV+ AM+ A N Q YL+D + K P T+AQI+ Sbjct: 69 AIKNQLIARVLIQQAAEKANYGSKPEVQTAMQVAKANAETQLYLKDNV-KPEPVTDAQIK 127 Query: 125 DAYATLSRQM---EYRVRLIETADEATAQLMQQRLSQGWSFAGLVRRFSIGANAAGGGEM 181 Y + + EY+ RLI D ATA + L G F GL R++SI + GGE+ Sbjct: 128 ARYDEIVASLGKDEYKPRLIVVKDAATAATVLAELKAGKPFDGLARQYSIAPSRDAGGEL 187 Query: 182 PWVTFATPVDEKELRGALPLPLAQAMVQLKVGQVWPQPIPMGTHWVLARLEARRPYSPPP 241 PWV+F TP E + G LP+ +AQA+ +L VG V P+ I + + +L+A+RP P Sbjct: 188 PWVSFKTPAAEGKTAG-LPVAIAQALDKLPVGAVTPESIAVDNARAIVKLDAKRPTQVPT 246 Query: 242 LEQAAPLLRAQLWQAAREQA 261 QA + QL A E+A Sbjct: 247 FNQAQATIHQQLEALALEKA 266 >ref|YP_002232721.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] emb|CAR53944.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] Length = 272 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 40 SALQEQRIRAALQSVGLEDTPQNRQDVRKRMAAGDGLLRAATQAGYQNRPEVRDAMEQAA 99 + + + + L++ G D+PQ RQ ++ ++ + +AA +A Y ++PEV+ AM+QA Sbjct: 34 TPITQTDVDTLLRASGQPDSPQIRQAIKNQLITRVLVQQAAEKANYADKPEVKAAMQQAK 93 Query: 100 QNVLVQSYLRDQLAKVAPPTEAQIRDAYATLSRQM---EYRVRLIETADEATAQLMQQRL 156 VQ YLRD + K P T+ Q++ Y L + E++ RLI D A + L Sbjct: 94 VTAEVQLYLRDHV-KPEPVTDEQVKARYDELVAALGKNEFKPRLIVVKDPVAAATVLSEL 152 Query: 157 SQGWSFAGLVRRFSIGANAAGGGEMPWVTFATPVDEKELRGALPLPLAQAMVQLKVGQVW 216 G SF GL R++S+ + GGE+PWV+F TP E G LPLP+AQA+ +L VG V Sbjct: 153 KAGKSFDGLARQYSVAPSRDTGGELPWVSFNTPAVEGRTAG-LPLPVAQALEKLSVGAVT 211 Query: 217 PQPIPMGTHWVLARLEARRPYSPPPLEQAAPLLRAQLWQAAREQARDALI 266 IP+ + +L+A+RP P E A P L+ QL A E+A +I Sbjct: 212 KDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQMI 261