BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3972.p         (109 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777955.1| membrane protein [Herbaspirillum seropedicae...    63   2e-08

>ref|YP_003777955.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ66047.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 4/84 (4%)

Query: 29  RQLEQTDDPMRKRLRKTLAGGCLPPVVRPPRQLQPAVQMASQACTPEVRVRAETG--PAR 86
           R  E  DDP+R+RLRK+L  G  PPV  PPR L+ +V     A       +  TG  P +
Sbjct: 129 RMGEHPDDPVRQRLRKSLGQGPRPPVEHPPRHLR-SVAPPPAAAPSASNFQPSTGRSPGK 187

Query: 87  P-VAKQVQHEEYTQPLRANQRQWT 109
           P + +QVQHEEY+QPLRA+QRQWT
Sbjct: 188 PALPRQVQHEEYSQPLRASQRQWT 211