BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3968.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777952.1| cysteine hydrolases superfamily protein [Her... 527 e-148 ref|YP_004750772.1| nicotinamidase [Collimonas fungivorans Ter33... 394 e-107 ref|YP_983937.1| hypothetical protein Pnap_3720 [Polaromonas nap... 380 e-104 ref|YP_002948111.1| hypothetical protein Vapar_6282 [Variovorax ... 368 e-100 gb|EFV82129.1| hypothetical protein HMPREF0005_00895 [Achromobac... 355 3e-96 >ref|YP_003777952.1| cysteine hydrolases superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ66044.1| cysteine hydrolases superfamily protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 273/287 (95%), Positives = 278/287 (96%) Query: 1 MKRSLHLLVIDPQNDFCDLPADWLPVDPATGGVLQPALPVAGSHADLQRVARLIDQGGTG 60 MKRSLHLLVIDPQNDFCDLPA WLPVDPA+GG LQPALPVAGSHADLQRVA LIDQGG G Sbjct: 1 MKRSLHLLVIDPQNDFCDLPASWLPVDPASGGALQPALPVAGSHADLQRVAGLIDQGGAG 60 Query: 61 LSAISITLDAHHRLDIAHPTFWQQADGAAVTPFTQIEAAQVRAGAYLPRDPQALPRALAY 120 LSAISITLDAHHRLDIAHPTFW+Q DG+AVTPFTQIEAAQVRAG YLPRDPQ+LPRALAY Sbjct: 61 LSAISITLDAHHRLDIAHPTFWRQGDGSAVTPFTQIEAAQVRAGLYLPRDPQSLPRALAY 120 Query: 121 LDALETAGRYRLMVWPVHCEIGSWGGAVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH 180 LDALE AGRYRLMVWPVHCEIGSWG AVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH Sbjct: 121 LDALEAAGRYRLMVWPVHCEIGSWGAAVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH 180 Query: 181 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA 240 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA Sbjct: 181 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA 240 Query: 241 RLVLVTDCMSPVAGFEAQYQDFLAAMSRAGVRLATSEQVLQELQANA 287 RLVLVTDCMSPVAGFEAQYQDFLAAMS+AGVRLATS QVLQELQANA Sbjct: 241 RLVLVTDCMSPVAGFEAQYQDFLAAMSQAGVRLATSAQVLQELQANA 287 >ref|YP_004750772.1| nicotinamidase [Collimonas fungivorans Ter331] gb|AEK59949.1| Nicotinamidase [Collimonas fungivorans Ter331] Length = 294 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 196/287 (68%), Positives = 225/287 (78%) Query: 1 MKRSLHLLVIDPQNDFCDLPADWLPVDPATGGVLQPALPVAGSHADLQRVARLIDQGGTG 60 M+R+LHLL+IDPQNDFCDLPA +LP +PA GG + PALPV G+HAD+ RVA LI +GG G Sbjct: 1 MRRNLHLLIIDPQNDFCDLPAGYLPDNPAGGGRMGPALPVPGAHADMLRVADLIKRGGAG 60 Query: 61 LSAISITLDAHHRLDIAHPTFWQQADGAAVTPFTQIEAAQVRAGAYLPRDPQALPRALAY 120 +SAISITLD+HHRLDIAHP FW A G V PFTQI AA+VRAG+YLPR P ALPR L Y Sbjct: 61 ISAISITLDSHHRLDIAHPGFWTSAAGGEVAPFTQISAAEVRAGSYLPRLPAALPRVLHY 120 Query: 121 LDALETAGRYRLMVWPVHCEIGSWGGAVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH 180 LD LE AGRY+LMVWPVHCEIGSWG VHADVR+AYNRWEERTL V K+ KGSNPWTEH Sbjct: 121 LDQLEAAGRYQLMVWPVHCEIGSWGHNVHADVRSAYNRWEERTLRSVAKISKGSNPWTEH 180 Query: 181 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA 240 YSAV AEVPD DD TQ N+ F+ +LA+AD +YITGEAGSHCV+ATTEHIA Sbjct: 181 YSAVQAEVPDPDDALTQSNQAFLDSLAKADCIYITGEAGSHCVKATTEHIADYFGPQHIG 240 Query: 241 RLVLVTDCMSPVAGFEAQYQDFLAAMSRAGVRLATSEQVLQELQANA 287 +LVLVTDCMSPV+GF+ QY+ F+ M+ G R A VL +L NA Sbjct: 241 KLVLVTDCMSPVSGFQEQYRQFVEDMAARGARTADVADVLLDLLGNA 287 >ref|YP_983937.1| hypothetical protein Pnap_3720 [Polaromonas naphthalenivorans CJ2] gb|ABM39016.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 293 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 189/287 (65%), Positives = 226/287 (78%) Query: 1 MKRSLHLLVIDPQNDFCDLPADWLPVDPATGGVLQPALPVAGSHADLQRVARLIDQGGTG 60 MK+++ LL+IDPQNDFCDLPADW P+DP TG L PALPVAG+HAD+ R+A LI +G G Sbjct: 7 MKKNIQLLLIDPQNDFCDLPADWCPLDPLTGQALAPALPVAGAHADMLRLAGLIREGAPG 66 Query: 61 LSAISITLDAHHRLDIAHPTFWQQADGAAVTPFTQIEAAQVRAGAYLPRDPQALPRALAY 120 +SAI++TLD+HHR DIAHPTFWQ G +V+PFT I AAQVR G+Y P+DP LPRALAY Sbjct: 67 ISAIALTLDSHHRFDIAHPTFWQTGAGGSVSPFTPIAAAQVRDGSYAPKDPLMLPRALAY 126 Query: 121 LDALETAGRYRLMVWPVHCEIGSWGGAVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH 180 LDALE GRY LMVWPVHCEIGSWG A+H V+AA NRWE+R L V K+ KGSNPWTEH Sbjct: 127 LDALEQRGRYTLMVWPVHCEIGSWGHAIHLAVKAACNRWEDRNLAVARKISKGSNPWTEH 186 Query: 181 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA 240 YSA+ AEVPD D ATQLNR FIA L +AD + I GEA SHCV+ATTEH+ +L + + Sbjct: 187 YSALQAEVPDAGDAATQLNRAFIAELDRADQIIIAGEASSHCVKATTEHLIDHLPSGQSS 246 Query: 241 RLVLVTDCMSPVAGFEAQYQDFLAAMSRAGVRLATSEQVLQELQANA 287 ++VL+TDCMSPV GFEAQ++ FLA M+ GVRLATS ++L L NA Sbjct: 247 KVVLLTDCMSPVGGFEAQHRAFLADMASRGVRLATSAEILPALADNA 293 >ref|YP_002948111.1| hypothetical protein Vapar_6282 [Variovorax paradoxus S110] gb|ACS22845.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 287 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 192/287 (66%), Positives = 222/287 (77%) Query: 1 MKRSLHLLVIDPQNDFCDLPADWLPVDPATGGVLQPALPVAGSHADLQRVARLIDQGGTG 60 MK+++HLLVIDPQNDFCDLPADWL D ATG QPALPVAG+HAD+ R+A LI +G G Sbjct: 1 MKQNIHLLVIDPQNDFCDLPADWLGTDAATGTPQQPALPVAGAHADMLRLAGLIREGAGG 60 Query: 61 LSAISITLDAHHRLDIAHPTFWQQADGAAVTPFTQIEAAQVRAGAYLPRDPQALPRALAY 120 ++ I++TLD+HHR DIAHPTFWQ G AV PFT I AAQVR G YLPRD ALPRALAY Sbjct: 61 IAGITVTLDSHHRFDIAHPTFWQARGGGAVAPFTAITAAQVRGGDYLPRDAAALPRALAY 120 Query: 121 LDALETAGRYRLMVWPVHCEIGSWGGAVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH 180 LD LE GRY LMVWPVHCEIGSWG VHA V+AAYN WE+ G+V K+ KGSNPWTEH Sbjct: 121 LDELERRGRYTLMVWPVHCEIGSWGHNVHAAVKAAYNAWEDAQAGLVEKVAKGSNPWTEH 180 Query: 181 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA 240 YSA+ AEVPD +DP T LN +A+L +AD + I GEA SHCV+ATTEHIAA+L + A Sbjct: 181 YSAIQAEVPDAEDPGTALNMPLVASLDRADLIVIAGEASSHCVKATTEHIAAHLPSGRPA 240 Query: 241 RLVLVTDCMSPVAGFEAQYQDFLAAMSRAGVRLATSEQVLQELQANA 287 RLVLVTDCMSPV GFEAQ+Q FL ++ GV+L TS +V L ANA Sbjct: 241 RLVLVTDCMSPVTGFEAQHQAFLDDVAARGVQLRTSAEVRALLAANA 287 >gb|EFV82129.1| hypothetical protein HMPREF0005_00895 [Achromobacter xylosoxidans C54] Length = 305 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 172/283 (60%), Positives = 210/283 (74%) Query: 1 MKRSLHLLVIDPQNDFCDLPADWLPVDPATGGVLQPALPVAGSHADLQRVARLIDQGGTG 60 M RS+HLL+IDPQNDFCDLP +LP DP TG + PALPV G+HAD+QR+AR ID Sbjct: 22 MSRSVHLLIIDPQNDFCDLPTTYLPTDPLTGQAVAPALPVPGAHADMQRLARFIDAAAPS 81 Query: 61 LSAISITLDAHHRLDIAHPTFWQQADGAAVTPFTQIEAAQVRAGAYLPRDPQALPRALAY 120 LSAI++TLD+HHRLDIAHPTFW+ DG V+PFT I A+QVR+GA+ PR LPR L+Y Sbjct: 82 LSAITVTLDSHHRLDIAHPTFWRTGDGRPVSPFTPITASQVRSGAFQPRHVDDLPRTLSY 141 Query: 121 LDALETAGRYRLMVWPVHCEIGSWGGAVHADVRAAYNRWEERTLGVVTKLGKGSNPWTEH 180 LD LE GRY LMVWPVHCEIG+WG VHADVRAAY RWEE +V K+ KG+NPWTEH Sbjct: 142 LDELEARGRYTLMVWPVHCEIGTWGHNVHADVRAAYGRWEEERQFIVRKVPKGANPWTEH 201 Query: 181 YSAVMAEVPDDDDPATQLNRGFIATLAQADTVYITGEAGSHCVRATTEHIAANLDAAGRA 240 YSA+MAEVPD DDP TQLNR + +L +AD V + GEAGSHCV+AT EH+ +L + Sbjct: 202 YSALMAEVPDADDPRTQLNRNLLDSLDRADLVIVAGEAGSHCVKATVEHLTEHLPGGNLS 261 Query: 241 RLVLVTDCMSPVAGFEAQYQDFLAAMSRAGVRLATSEQVLQEL 283 R+VL+TDC+SPV GF + FL + G +L TS +++ L Sbjct: 262 RIVLLTDCISPVTGFASAQASFLTKIRDLGGQLRTSVDMVRAL 304