BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3966.p (614 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase [Herbaspir... 1043 0.0 ref|YP_002948113.1| NAD+ synthetase [Variovorax paradoxus S110] ... 689 0.0 ref|ZP_03545186.1| NAD+ synthetase [Comamonas testosteroni KF-1]... 659 0.0 ref|ZP_07043044.1| NAD+ synthetase [Comamonas testosteroni S44] ... 658 0.0 ref|YP_003276691.1| NAD+ synthetase [Comamonas testosteroni CNB-... 652 0.0 >ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ66042.1| NH(3)-dependent NAD(+) synthetase protein [Herbaspirillum seropedicae SmR1] Length = 565 Score = 1043 bits (2696), Expect = 0.0, Method: Composition-based stats. Identities = 527/565 (93%), Positives = 541/565 (95%) Query: 50 MLRIAIAQCNPTIGDFTGNLALHLDALQRAAGAGADLVVFPELSVCGYYPGDLLEEPRFL 109 MLRIAIAQCNPTIGDF GNLALHLD LQRAA AGADLVVFPELS+CGYYPGDLLEE RFL Sbjct: 1 MLRIAIAQCNPTIGDFEGNLALHLDGLQRAAQAGADLVVFPELSICGYYPGDLLEEARFL 60 Query: 110 GQAEQALQRLITATRDYPGLTAVIGAPRRNPGPGKPLFNALLAVREGVIVAEYHKQLLPV 169 +AE LQ +I ATR PGLTAVIGAPRRNPGPGKPLFNALLAVREG IVAEYHKQLLPV Sbjct: 61 DRAEATLQDVIDATRRLPGLTAVIGAPRRNPGPGKPLFNALLAVREGRIVAEYHKQLLPV 120 Query: 170 YGVFDDGRHFEAGPETACVLPVKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV 229 YGVFDDGRHFEAGPETACVLP+KGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV Sbjct: 121 YGVFDDGRHFEAGPETACVLPLKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV 180 Query: 230 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE 289 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE Sbjct: 181 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE 240 Query: 290 AARLAEDFQVIAFESGRFLRSDGVGEPVRADQTLATPEFQRRQILLGLRDYARRCGFGKV 349 AARLAEDFQV+AFE GRFLRSDGVG P DQT+ATPEF RRQILLGLRDYARRCGFGKV Sbjct: 241 AARLAEDFQVLAFEGGRFLRSDGVGAPQCIDQTMATPEFHRRQILLGLRDYARRCGFGKV 300 Query: 350 VVGCSGGIDSALTIALAVEALGAQNVVAVTMPSMFSSTGSVDDSETLCQALGVTLFRHPI 409 VVG SGGIDSA+TIALA EALGAQNVVAVTMPS+FSS GSV DSETLCQALGVTLFRHPI Sbjct: 301 VVGSSGGIDSAVTIALAAEALGAQNVVAVTMPSVFSSAGSVSDSETLCQALGVTLFRHPI 360 Query: 410 SDLVREFEDGFAKAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVGY 469 +DLVREFEDGFA AFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVGY Sbjct: 361 ADLVREFEDGFATAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVGY 420 Query: 470 CTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTDS 529 CTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTDS Sbjct: 421 CTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTDS 480 Query: 530 LPPYEVLDEILKWHIEGSRLPADEARAASRAVEQLSGTETGAALVERICRMVARNEYKRR 589 LPPYEVLDEILKWHIEGSRLPADEA+AA+R VEQLSGT+TGAALVERICRMVARNEYKRR Sbjct: 481 LPPYEVLDEILKWHIEGSRLPADEAQAAARTVEQLSGTDTGAALVERICRMVARNEYKRR 540 Query: 590 QSPPVIRVRARAFGSGRQIPIAVRY 614 QSPPVIR+R+RAFGSGRQIPIAVRY Sbjct: 541 QSPPVIRLRSRAFGSGRQIPIAVRY 565 >ref|YP_002948113.1| NAD+ synthetase [Variovorax paradoxus S110] gb|ACS22847.1| NAD+ synthetase [Variovorax paradoxus S110] Length = 566 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 362/565 (64%), Positives = 421/565 (74%) Query: 50 MLRIAIAQCNPTIGDFTGNLALHLDALQRAAGAGADLVVFPELSVCGYYPGDLLEEPRFL 109 MLRI +AQ NPTIGD GN A ++A +RAA +DLVVF ELS+ YYP DLLEE F+ Sbjct: 1 MLRITVAQLNPTIGDLAGNTARMIEAARRAAADESDLVVFSELSLTAYYPADLLEEDGFM 60 Query: 110 GQAEQALQRLITATRDYPGLTAVIGAPRRNPGPGKPLFNALLAVREGVIVAEYHKQLLPV 169 + E+A +L++A+R+ P L +G P R G GK L N L + G + EY KQLLP Sbjct: 61 DRVEEAFGQLLSASREMPALHWAVGLPARREGAGKKLRNVLRVISAGEVRLEYAKQLLPT 120 Query: 170 YGVFDDGRHFEAGPETACVLPVKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV 229 Y VFD+ RHFE GP+ A VL ++G RVGFLICEDGWND+ + Y VNPF+++ A LVV Sbjct: 121 YNVFDERRHFEPGPDVARVLRIRGTRVGFLICEDGWNDEGQDYLVNPFDRMRDAAPDLVV 180 Query: 230 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE 289 SINASPS++GKR QRH +F AA R + +LYVNQVGG DQLVYDG SFA+ P G+ +E Sbjct: 181 SINASPSNIGKREQRHRIFGAASRRNGLPILYVNQVGGHDQLVYDGASFAVEPQAGVVYE 240 Query: 290 AARLAEDFQVIAFESGRFLRSDGVGEPVRADQTLATPEFQRRQILLGLRDYARRCGFGKV 349 A R AED + FE GRFL G P Q L T EF R+QI+LGLRDYARRCGF + Sbjct: 241 AHRFAEDVSTLRFEDGRFLTPAGEAPPPVPPQGLPTLEFYRQQIVLGLRDYARRCGFRQA 300 Query: 350 VVGCSGGIDSALTIALAVEALGAQNVVAVTMPSMFSSTGSVDDSETLCQALGVTLFRHPI 409 VVG SGGIDSALT+ALAVEALGAQNVVA+TMPS FSS GSVDDSE LC+ LGV L H I Sbjct: 301 VVGSSGGIDSALTLALAVEALGAQNVVAITMPSRFSSAGSVDDSERLCRNLGVPLEAHAI 360 Query: 410 SDLVREFEDGFAKAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVGY 469 + +V +FE GF AFG L + LENLQARVRG +LM YSN + LLLTTGNKSEISVGY Sbjct: 361 AGVVSQFEQGFETAFGQGLEDVALENLQARVRGTVLMGYSNSFGHLLLTTGNKSEISVGY 420 Query: 470 CTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTDS 529 CTLYGDTNGGLGLIGDLYKTEV+AL+RHLNAQAGRE+IP AI+DK PSAELAP Q+D DS Sbjct: 421 CTLYGDTNGGLGLIGDLYKTEVFALSRHLNAQAGRELIPQAILDKEPSAELAPGQKDADS 480 Query: 530 LPPYEVLDEILKWHIEGSRLPADEARAASRAVEQLSGTETGAALVERICRMVARNEYKRR 589 LP YEVLDE+LK IEG RL A E A V++L T G ALVERI MVARNEYKRR Sbjct: 481 LPSYEVLDEVLKLLIEGQRLGAQEYEQARSFVDRLRATPEGEALVERIRGMVARNEYKRR 540 Query: 590 QSPPVIRVRARAFGSGRQIPIAVRY 614 QSPP++RVR RAFGSGRQ+PIA R+ Sbjct: 541 QSPPIVRVRPRAFGSGRQMPIAARW 565 >ref|ZP_03545186.1| NAD+ synthetase [Comamonas testosteroni KF-1] gb|EED69472.1| NAD+ synthetase [Comamonas testosteroni KF-1] Length = 567 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 339/566 (59%), Positives = 415/566 (73%), Gaps = 1/566 (0%) Query: 50 MLRIAIAQCNPTIGDFTGNLALHLDALQRAAGAGADLVVFPELSVCGYYPGDLLEEPRFL 109 ML++ +AQ N +GD +GN+ +A RAA ADLVVF ELS+CGYYPGDLL+EP FL Sbjct: 1 MLKVTLAQLNYMVGDISGNIRRMREAATRAAAEQADLVVFSELSLCGYYPGDLLDEPSFL 60 Query: 110 GQAEQALQRLITATRDYPGLTAVIGAPRRNPGPGKPLFNALLAVREGVIVAEYHKQLLPV 169 + + LQ L+ ATR +P L V+GAP R+ GPGKPL N+LL ++ G I +Y KQLLP Sbjct: 61 QRLDAGLQELLQATRQFPDLHWVVGAPTRHDGPGKPLHNSLLVLKNGQIRLQYDKQLLPT 120 Query: 170 YGVFDDGRHFEAGPETACVLPVKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV 229 Y +FD+ RHFE G +TA VL V +VGFL+CEDGWND Y NPF ++ A LV+ Sbjct: 121 YNIFDERRHFEPGADTAKVLRVGNCQVGFLVCEDGWNDQGADYATNPFVRMGDAAPDLVI 180 Query: 230 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE 289 SINASPS +GKR QRH +F A R ++A+LY+NQ+GGQDQ+V+DG SFA+ P GL FE Sbjct: 181 SINASPSHLGKREQRHEVFTQAAARHKLAILYINQIGGQDQIVFDGASFAVEPEAGLVFE 240 Query: 290 AARLAEDFQVIAFES-GRFLRSDGVGEPVRADQTLATPEFQRRQILLGLRDYARRCGFGK 348 A R ED + + GRF DG P Q LAT EF R+QI+LGLRDYARRCGF + Sbjct: 241 ARRFEEDIYTLELNTQGRFQACDGQTLPTVPAQGLATMEFYRQQIVLGLRDYARRCGFQQ 300 Query: 349 VVVGCSGGIDSALTIALAVEALGAQNVVAVTMPSMFSSTGSVDDSETLCQALGVTLFRHP 408 VVVG SGGIDSALT+ALAV+ALGA+NVV +TMPS +SS GSVDDS LC+ LG+ L+ HP Sbjct: 301 VVVGSSGGIDSALTLALAVDALGAENVVGITMPSSYSSAGSVDDSVLLCRNLGIRLYEHP 360 Query: 409 ISDLVREFEDGFAKAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVG 468 I +LV + F +FG PL+GL LENLQAR RG LME+SN + LLLTTGNKSE+SVG Sbjct: 361 IKELVTTYARQFEASFGEPLKGLALENLQARARGTTLMEFSNAFGHLLLTTGNKSEVSVG 420 Query: 469 YCTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTD 528 YCTLYGDTNGGLGL+GDLYKTEV+ L+RH+N AGRE+IP AIIDK PSAELAP Q+D D Sbjct: 421 YCTLYGDTNGGLGLLGDLYKTEVFELSRHINQHAGRELIPQAIIDKPPSAELAPGQKDED 480 Query: 529 SLPPYEVLDEILKWHIEGSRLPADEARAASRAVEQLSGTETGAALVERICRMVARNEYKR 588 SLPPY VLDEILKWHIEG L + E A+ V +L G + R+ ++V R+EYKR Sbjct: 481 SLPPYAVLDEILKWHIEGQHLSSKEYAQAAAFVTRLRAEAGGPETIARVQKLVFRSEYKR 540 Query: 589 RQSPPVIRVRARAFGSGRQIPIAVRY 614 RQ+PP++RVR RAFG+GRQ+PIA Y Sbjct: 541 RQAPPMLRVRPRAFGTGRQMPIAAHY 566 >ref|ZP_07043044.1| NAD+ synthetase [Comamonas testosteroni S44] gb|EFI63390.1| NAD+ synthetase [Comamonas testosteroni S44] Length = 567 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 340/566 (60%), Positives = 413/566 (72%), Gaps = 1/566 (0%) Query: 50 MLRIAIAQCNPTIGDFTGNLALHLDALQRAAGAGADLVVFPELSVCGYYPGDLLEEPRFL 109 ML++ IAQ N +GD +GN+ +A RAA ADLVVF ELS+CGYYPGDLL+EP FL Sbjct: 1 MLKVTIAQLNYMVGDISGNIRRMREAATRAAAEQADLVVFSELSLCGYYPGDLLDEPSFL 60 Query: 110 GQAEQALQRLITATRDYPGLTAVIGAPRRNPGPGKPLFNALLAVREGVIVAEYHKQLLPV 169 + + LQ L+ ATR +P L V+GAP R+ GPGKPL N+LL ++ G I +Y KQLLP Sbjct: 61 QRLDAGLQELLQATRQFPDLHWVVGAPTRHNGPGKPLHNSLLVLKNGQIRLQYDKQLLPT 120 Query: 170 YGVFDDGRHFEAGPETACVLPVKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV 229 Y +FD+ RHFE G +TA VL V +VGFL+CEDGWND Y NPF ++ A LV+ Sbjct: 121 YNIFDERRHFEPGADTAKVLRVGNCQVGFLVCEDGWNDQGADYATNPFVRMGDAAPDLVI 180 Query: 230 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE 289 SINASPS +GKR QRH +F A R ++A+LY+NQ+GGQDQ+V+DG SFA+ P GL FE Sbjct: 181 SINASPSHLGKREQRHEVFTQAAARHKLAILYINQIGGQDQIVFDGASFAVEPEAGLVFE 240 Query: 290 AARLAEDFQVIAFES-GRFLRSDGVGEPVRADQTLATPEFQRRQILLGLRDYARRCGFGK 348 A R ED + + GRF DG P Q LAT EF R+QI+LGLRDYARRCGF + Sbjct: 241 ARRFEEDVCTLELNAQGRFQACDGTALPTVPAQGLATMEFYRQQIVLGLRDYARRCGFQQ 300 Query: 349 VVVGCSGGIDSALTIALAVEALGAQNVVAVTMPSMFSSTGSVDDSETLCQALGVTLFRHP 408 VVVG SGGIDSALT+ALAV+ALGA NVV +TMPS +SS GSVDDS LC+ LG+ L+ HP Sbjct: 301 VVVGSSGGIDSALTLALAVDALGADNVVGITMPSSYSSAGSVDDSVLLCRNLGIRLYEHP 360 Query: 409 ISDLVREFEDGFAKAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVG 468 I +LV + F +FG PL+GL LENLQAR RG LME+SN + LLLTTGNKSE+SVG Sbjct: 361 IKELVTTYARQFEASFGEPLKGLALENLQARARGTTLMEFSNAFGHLLLTTGNKSEVSVG 420 Query: 469 YCTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTD 528 YCTLYGDTNGGLGL+GDLYKTEV+ L+RH+N AGRE+IP AIIDK PSAELAP Q+D D Sbjct: 421 YCTLYGDTNGGLGLLGDLYKTEVFELSRHINRHAGRELIPQAIIDKPPSAELAPGQKDED 480 Query: 529 SLPPYEVLDEILKWHIEGSRLPADEARAASRAVEQLSGTETGAALVERICRMVARNEYKR 588 SLPPY VLDEILKWHIEG L E A+ V +L G + R+ ++V R+EYKR Sbjct: 481 SLPPYAVLDEILKWHIEGQHLSNKEYAHAATFVAKLRTQAGGPETIARVQKLVFRSEYKR 540 Query: 589 RQSPPVIRVRARAFGSGRQIPIAVRY 614 RQ+PP++RVR RAFG+GRQ+PIA Y Sbjct: 541 RQAPPMLRVRPRAFGTGRQMPIAAHY 566 >ref|YP_003276691.1| NAD+ synthetase [Comamonas testosteroni CNB-2] gb|ACY31395.1| NAD+ synthetase [Comamonas testosteroni CNB-2] Length = 567 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 338/566 (59%), Positives = 411/566 (72%), Gaps = 1/566 (0%) Query: 50 MLRIAIAQCNPTIGDFTGNLALHLDALQRAAGAGADLVVFPELSVCGYYPGDLLEEPRFL 109 ML++ +AQ N +GD +GN+ +A RAA ADLVVF ELS+CGYYPGDLL+EP FL Sbjct: 1 MLKVTLAQLNYMVGDISGNIRRMREAATRAAAEQADLVVFSELSLCGYYPGDLLDEPSFL 60 Query: 110 GQAEQALQRLITATRDYPGLTAVIGAPRRNPGPGKPLFNALLAVREGVIVAEYHKQLLPV 169 + + LQ L+ ATR P L V+GAP R+ GPGKPL N+LL ++ G I +Y KQLLP Sbjct: 61 QRLDAGLQELLQATRLLPDLHWVVGAPTRHDGPGKPLHNSLLVLKNGQIRLQYDKQLLPT 120 Query: 170 YGVFDDGRHFEAGPETACVLPVKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVV 229 Y +FD+ RHFE G +TA VL V +VGFL+CEDGWND Y NPF ++ A LV+ Sbjct: 121 YNIFDERRHFEPGADTAKVLRVGNCQVGFLVCEDGWNDQGADYATNPFVRMGDAAPDLVI 180 Query: 230 SINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAFE 289 SINASPS +GKR QRH +F A R ++A+LY+NQ+GGQDQ+V+DG SFA+ P GL FE Sbjct: 181 SINASPSHLGKREQRHEVFTQAAARHKLAILYINQIGGQDQIVFDGASFAVEPEAGLVFE 240 Query: 290 AARLAEDFQVIAFES-GRFLRSDGVGEPVRADQTLATPEFQRRQILLGLRDYARRCGFGK 348 A R ED + + GRF DG P Q L T EF R+QI+LGLRDYARRCGF + Sbjct: 241 ARRFEEDVCTLELNAQGRFQACDGTALPAVPTQGLPTMEFYRQQIVLGLRDYARRCGFKQ 300 Query: 349 VVVGCSGGIDSALTIALAVEALGAQNVVAVTMPSMFSSTGSVDDSETLCQALGVTLFRHP 408 VVVG SGGIDSALT+ALAV+ALGA NVV +TMPS +SS GSVDDS LC+ LG+ L+ HP Sbjct: 301 VVVGSSGGIDSALTLALAVDALGADNVVGITMPSSYSSAGSVDDSVLLCRNLGIRLYEHP 360 Query: 409 ISDLVREFEDGFAKAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVG 468 I +LV + F +FG PL+GL LENLQAR RG LME+SN + LLLTTGNKSE+SVG Sbjct: 361 IKELVTTYARQFEASFGEPLKGLALENLQARARGTTLMEFSNAFGHLLLTTGNKSEVSVG 420 Query: 469 YCTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTD 528 YCTLYGDTNGGLGL+GDLYKTEV+ L+RH+N AGRE+IP AIIDK PSAELAP Q+D D Sbjct: 421 YCTLYGDTNGGLGLLGDLYKTEVFELSRHINRHAGRELIPQAIIDKPPSAELAPGQKDED 480 Query: 529 SLPPYEVLDEILKWHIEGSRLPADEARAASRAVEQLSGTETGAALVERICRMVARNEYKR 588 SLPPY VLDEILKWHIEG L E A+ V +L G + R+ ++V R+EYKR Sbjct: 481 SLPPYAVLDEILKWHIEGQHLSNKEYAHAATFVAKLRTQAGGPETIARVQKLVFRSEYKR 540 Query: 589 RQSPPVIRVRARAFGSGRQIPIAVRY 614 RQ+PP++RVR RAFG+GRQ+PIA Y Sbjct: 541 RQAPPMLRVRPRAFGTGRQMPIAAHY 566