BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3964.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777948.1| hypothetical protein Hsero_4574 [Herbaspiril... 606 e-171 ref|YP_004156696.1| hypothetical protein Varpa_4417 [Variovorax ... 335 9e-90 ref|NP_641028.1| hypothetical protein XAC0675 [Xanthomonas axono... 328 1e-87 ref|ZP_06732114.1| conserved hypothetical protein [Xanthomonas f... 327 3e-87 ref|ZP_08190305.1| hypothetical protein XPE_4409 [Xanthomonas pe... 321 1e-85 >ref|YP_003777948.1| hypothetical protein Hsero_4574 [Herbaspirillum seropedicae SmR1] gb|ADJ66040.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 311/371 (83%), Positives = 335/371 (90%) Query: 58 SPALPDLMPAALQQLLENRLPRVIRREPDQDDARRWRRWEIGGRTVQIAQPVTFTPYASA 117 + ALP LMPA+LQ+ L+ RLPRVI+REPD+DDA RWR WE+GGRTVQIAQPVTFTPYASA Sbjct: 2 ATALPALMPASLQRRLQARLPRVIQREPDEDDASRWRHWELGGRTVQIAQPVTFTPYASA 61 Query: 118 QPCSARCRFCSETLDDGGPHAAALRPGPQYGAQLRQALAALRGLPLSWSLSGLETTDDAG 177 +PCSARCRFCSETL+DGGPHAAALRPG +Y AQLRQALAAL+GLPLSWSLSGLETTDDAG Sbjct: 62 RPCSARCRFCSETLNDGGPHAAALRPGLRYSAQLRQALAALQGLPLSWSLSGLETTDDAG 121 Query: 178 WMLSMLDALQEHARQSPVQGSVLYTNGAGLATPRGAELVTRLQAFDLGWVELSRHHHEAQ 237 WMLSMLD LQEHAR SPVQGSVLYTNGAGL GA LV RLQ F LGWVELSRHHHEA Sbjct: 122 WMLSMLDVLQEHARHSPVQGSVLYTNGAGLVGSPGAALVARLQDFGLGWVELSRHHHEAA 181 Query: 238 ANQAIMRFRSGQAVATQAGIDATLTQLVPQLPVKLVCIVQQGGIDGVPALKAYLRWAQQR 297 ANQAIMRFRSGQAVATQ G++ L QL PQLPVKLVCIVQQGGIDG+PALKAYLRWAQQ+ Sbjct: 182 ANQAIMRFRSGQAVATQEGVEGVLAQLAPQLPVKLVCIVQQGGIDGLPALKAYLRWAQQQ 241 Query: 298 GVTAVILREFSQLGPQYRNNVTARYIGGARIDVAALLAACLADPELSAEAQPVHATSGYY 357 GVTAVILREFSQLGPQYR+NVTARYIG ARIDVA LLAACLADPE SAEAQ +HATSGYY Sbjct: 242 GVTAVILREFSQLGPQYRDNVTARYIGAARIDVAELLAACLADPEFSAEAQLMHATSGYY 301 Query: 358 FWNVVLHWRGMQLTFEASDYVRMHARHASGRIYKLVFHANGRLCGGWNPEQHVLLETTGA 417 FWNV+LHWRGMQLTFEASDY+RMH RHASGR+YKLVFHANGRLCGGWNP++HVLLET + Sbjct: 302 FWNVLLHWRGMQLTFEASDYLRMHQRHASGRVYKLVFHANGRLCGGWNPDEHVLLETGTS 361 Query: 418 APMRGRALQPL 428 R RA+ PL Sbjct: 362 VTARSRAVLPL 372 >ref|YP_004156696.1| hypothetical protein Varpa_4417 [Variovorax paradoxus EPS] gb|ADU38585.1| hypothetical protein Varpa_4417 [Variovorax paradoxus EPS] Length = 381 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 232/371 (62%), Gaps = 4/371 (1%) Query: 48 VHTAESIAPDSPALPDLMPAALQQLLENRLPRVIRREPDQDDARRWRRWEIGGRTVQIAQ 107 +H A + LP + L + L + RV RR P +A RW IGG + AQ Sbjct: 1 MHPAPPVEIALADLPRSAGSPLFERLRASVSRVTRRTPLAHEAERWHTHTIGGVARRFAQ 60 Query: 108 PVTFTPYASAQPCSARCRFCSETL--DDGGPHAAALRPGPQYGAQLRQALAALRGLPLSW 165 P+TFTPYAS +PCSARC FCSE L +GG A+ LRP P Y L +AL ALRG+PLSW Sbjct: 61 PITFTPYASVRPCSARCSFCSENLRKTEGGTPASRLRPTPDYFDGLARALRALRGVPLSW 120 Query: 166 SLSGLETTDDAGWMLSMLDALQEHARQSPV-QGSVLYTNGAGLATPRGAELVTRLQAFDL 224 SLSGLET+DDAGWML +L L + PV + VLYTNGAG A P+G L LQAF L Sbjct: 121 SLSGLETSDDAGWMLQLLHTLTASEKDGPVIEDRVLYTNGAGFAAPQGEALRCALQAFGL 180 Query: 225 GWVELSRHHHEAQANQAIMRFRSGQAVATQAGIDATLTQLVPQLPVKLVCIVQQGGIDGV 284 W+ELSRHHH+ NQAIMRFR + Q + T QL +P++LVCI+Q+ G+ Sbjct: 181 SWLELSRHHHDGATNQAIMRFRPEVTIGDQTVFERTARQLADAVPLRLVCILQRSGVAQP 240 Query: 285 PALKAYLRWAQQRGVTAVILREFSQLGPQYRNNVTARYIGGARIDVAALLAACLADPELS 344 + AYL WA+Q G V+ REFS+L YR+N TARY+ R+ + ALL ACL DPE+S Sbjct: 241 QDVAAYLSWARQCGAGTVVFREFSRLDDGYRDNATARYLRAERVSMDALLTACLDDPEVS 300 Query: 345 AEAQPVHATSGYYFWNVVLHWR-GMQLTFEASDYVRMHARHASGRIYKLVFHANGRLCGG 403 T GYYFWN+ L G+ + FE++DY MH RHA+G IYKLV+ A+G+LC G Sbjct: 301 RGWALEALTEGYYFWNLRLRTESGLNVVFESADYGAMHQRHATGDIYKLVYFADGQLCAG 360 Query: 404 WNPEQHVLLET 414 W P VLL+T Sbjct: 361 WEPGHDVLLDT 371 >ref|NP_641028.1| hypothetical protein XAC0675 [Xanthomonas axonopodis pv. citri str. 306] gb|AAM35564.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 366 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 181/339 (53%), Positives = 219/339 (64%), Gaps = 4/339 (1%) Query: 78 PRVIRREPDQDDARRWRRWEIGGRTVQIAQPVTFTPYASAQPCSARCRFCSETLDD--GG 135 P + RR P QDDA RW IGGRT + A P+TFTPYAS +PCSARC FCSE L GG Sbjct: 25 PHLQRRVPLQDDASRWYTLRIGGRTYRAALPITFTPYASVRPCSARCGFCSENLRQHRGG 84 Query: 136 PHAAALRPGPQYGAQLRQALAALRGLPLSWSLSGLETTDDAGWMLSMLDALQEHARQSPV 195 AA LRPGP Y QL L LR +PLS+SLSGLE TDDA W+ ++L L + Sbjct: 85 RAAATLRPGPAYFQQLSAVLQLLRDVPLSYSLSGLEMTDDAAWLQTLLQTLATTPNGPRI 144 Query: 196 QGSVLYTNGAGLATPRGAELVTRLQAFDLGWVELSRHHHEAQANQAIMRFRSGQAVATQA 255 + VLY+NGAGLA GA L+ L AF L WVELSRHH + N AIMRFR + +A A Sbjct: 145 EQRVLYSNGAGLARADGARLIEALVAFGLSWVELSRHHPLQERNDAIMRFRPDEPIADVA 204 Query: 256 GIDATLTQLVPQLPVKLVCIVQQGGIDGVPALKAYLRWAQQRGVTAVILREFSQLGPQYR 315 T +L +LP++LVCIVQ+GG+D A+ Y+ WA+ G + VI RE S+L YR Sbjct: 205 TFVQTARRLAARLPLRLVCIVQRGGVDNADAIAQYIAWARSCGASQVIFRELSRLDDAYR 264 Query: 316 NNVTARYIGGARIDVAALLAACLADPELSAEAQPVHATSGYYFWNVVLHWR-GMQLTFEA 374 +N T RYIG R+ V LLA C+ P S QP T GYYFWNV L R G+Q+ FE+ Sbjct: 265 SNGTLRYIGAHRVGVDTLLAECMQQPWWS-RWQPDGLTEGYYFWNVRLRDRAGLQVVFES 323 Query: 375 SDYVRMHARHASGRIYKLVFHANGRLCGGWNPEQHVLLE 413 +DY MHARHA+G +YKLVF ANGRLC GW+P+ VL E Sbjct: 324 ADYAAMHARHATGDLYKLVFFANGRLCAGWDPDADVLWE 362 >ref|ZP_06732114.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gb|EFF46751.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 366 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 179/341 (52%), Positives = 220/341 (64%), Gaps = 4/341 (1%) Query: 78 PRVIRREPDQDDARRWRRWEIGGRTVQIAQPVTFTPYASAQPCSARCRFCSETLDD--GG 135 P + RR P QD+A RW IGGRT + A P+TFTPYAS +PCSARC FCSE L GG Sbjct: 25 PHLQRRVPLQDEASRWHTLRIGGRTYRAALPITFTPYASVRPCSARCGFCSENLRQHRGG 84 Query: 136 PHAAALRPGPQYGAQLRQALAALRGLPLSWSLSGLETTDDAGWMLSMLDALQEHARQSPV 195 AA LRPGP Y QL L LR +PLS+SLSGLE TDDA W+ ++L L + + Sbjct: 85 RAAATLRPGPAYFRQLSAVLQLLRDVPLSYSLSGLEMTDDAAWLQALLQTLATTSNGPRI 144 Query: 196 QGSVLYTNGAGLATPRGAELVTRLQAFDLGWVELSRHHHEAQANQAIMRFRSGQAVATQA 255 + VLY+NGAGLA GA+L+ L F L WVELSRHH + N AIMRFR + +A A Sbjct: 145 EQRVLYSNGAGLARADGAQLIDALVGFGLSWVELSRHHRLQERNDAIMRFRPDEPIADVA 204 Query: 256 GIDATLTQLVPQLPVKLVCIVQQGGIDGVPALKAYLRWAQQRGVTAVILREFSQLGPQYR 315 T +L +LP++LVCIVQ+GG+D A+ Y+ WA+ G + VI RE S+L YR Sbjct: 205 TFVQTARRLAARLPLRLVCIVQRGGVDNADAIAQYIAWARSCGASQVIFRELSRLDDAYR 264 Query: 316 NNVTARYIGGARIDVAALLAACLADPELSAEAQPVHATSGYYFWNVVLH-WRGMQLTFEA 374 +N T RYIG R+ V LLA C+ P S QP T GYYFWNV L G+Q+ FE+ Sbjct: 265 SNGTLRYIGEHRVGVDTLLAECMQQPWWS-RWQPDGLTEGYYFWNVRLRDQTGLQVVFES 323 Query: 375 SDYVRMHARHASGRIYKLVFHANGRLCGGWNPEQHVLLETT 415 +DY MHARHA+G +YKLVF ANGRLC GW+P+ VL E T Sbjct: 324 ADYAAMHARHATGDLYKLVFFANGRLCAGWDPDADVLWEPT 364 >ref|ZP_08190305.1| hypothetical protein XPE_4409 [Xanthomonas perforans 91-118] gb|EGD12080.1| hypothetical protein XPE_4409 [Xanthomonas perforans 91-118] Length = 366 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 178/341 (52%), Positives = 216/341 (63%), Gaps = 4/341 (1%) Query: 78 PRVIRREPDQDDARRWRRWEIGGRTVQIAQPVTFTPYASAQPCSARCRFCSETLDD--GG 135 P + RR P QD+A RW IG RT + A P+TFTPYAS +PCSA C FCSE L GG Sbjct: 25 PHLQRRVPLQDEASRWHALRIGARTYRAALPITFTPYASVRPCSAHCGFCSENLRQHGGG 84 Query: 136 PHAAALRPGPQYGAQLRQALAALRGLPLSWSLSGLETTDDAGWMLSMLDALQEHARQSPV 195 AA LRPGP Y QL L LR +PLS+SLSGLE TDDA W+ ++L L V Sbjct: 85 RAAATLRPGPAYFQQLSAVLQLLRDVPLSYSLSGLEMTDDAAWLQTLLRTLATTPNGPRV 144 Query: 196 QGSVLYTNGAGLATPRGAELVTRLQAFDLGWVELSRHHHEAQANQAIMRFRSGQAVATQA 255 + VLY+NGAGLA GA L+ L AF L WVELSRHH + N AIMRFR + +A A Sbjct: 145 EQRVLYSNGAGLARAHGARLIEALVAFGLSWVELSRHHRLQERNDAIMRFRPDEPIADVA 204 Query: 256 GIDATLTQLVPQLPVKLVCIVQQGGIDGVPALKAYLRWAQQRGVTAVILREFSQLGPQYR 315 T +L +LP++LVCIVQ+GG+D A+ Y+ WA+ G + VI RE S+L YR Sbjct: 205 TFVQTARRLAARLPLRLVCIVQRGGVDNADAIAQYIAWARSCGASQVIFRELSRLDDAYR 264 Query: 316 NNVTARYIGGARIDVAALLAACLADPELSAEAQPVHATSGYYFWNVVLH-WRGMQLTFEA 374 +N T RYIG R+ V LL C+ P S QP T GYYFWNV L G+Q+ FE+ Sbjct: 265 SNGTLRYIGEHRVGVDTLLEECMQQPWWS-RWQPDGLTEGYYFWNVRLRDQTGLQVVFES 323 Query: 375 SDYVRMHARHASGRIYKLVFHANGRLCGGWNPEQHVLLETT 415 +DY MHARHA+G +YKLVF ANGRLC GW+P+ VL E T Sbjct: 324 ADYAAMHARHATGDLYKLVFFANGRLCAGWDPDADVLWEPT 364