BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3963.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777947.1| hypothetical protein Hsero_4573 [Herbaspiril... 554 e-156 ref|ZP_08177376.1| DNA methylase [Xanthomonas vesicatoria ATCC 3... 269 7e-70 ref|ZP_08185331.1| DNA modification methylase [Xanthomonas gardn... 257 2e-66 ref|YP_001902158.1| putative methyltransferase [Xanthomonas camp... 257 3e-66 ref|NP_638789.1| hypothetical protein XCC3443 [Xanthomonas campe... 248 2e-63 >ref|YP_003777947.1| hypothetical protein Hsero_4573 [Herbaspirillum seropedicae SmR1] gb|ADJ66039.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 386 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 301/383 (78%), Positives = 330/383 (86%), Gaps = 2/383 (0%) Query: 1 MNDNSWLHLSRQDPAWTLPQELAETDPFGARDCGWVEQMQPFIAHLCPPDGKVLDPFCGF 60 MNDNSWLHL+ QDPAWTLP +LA D FGARDCGWVEQMQPFIAHLCPP+G+VLDPFCGF Sbjct: 1 MNDNSWLHLTAQDPAWTLPADLAGVDRFGARDCGWVEQMQPFIAHLCPPEGRVLDPFCGF 60 Query: 61 GSTLVAAHSVGRAGIGIEIDGQRVALTRQRLQRLGADG--PPQQVLQGDATALAHSLPPV 118 GSTLVAAHS GRAGIGIE+DG RVALTRQRLQRL + P QQ++ GDA L LPPV Sbjct: 61 GSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLSPEAAEPAQQLIHGDAITLLPQLPPV 120 Query: 119 DLVLSNVPYFGCQWPDASDAAHAGQLYASQTYAGFLGMLERLLRALRDCLRPGGWLVLCA 178 DLVLSN+PYFGC+WP+ + AA +GQLYA QTYAGFLGMLERLL LR CLRPGGWLVLCA Sbjct: 121 DLVLSNIPYFGCRWPEQATAAQSGQLYAMQTYAGFLGMLERLLAGLRCCLRPGGWLVLCA 180 Query: 179 ENLRVGEQFVPLAWDLARLMADRFRFVEERILVYDRASTSETPGQLRSNRSHEYALIARH 238 ENLRVGE FVPLAWDLARLMADRF FVEERIL+YDRAS PGQ+RSNR+HEYAL+ARH Sbjct: 181 ENLRVGEHFVPLAWDLARLMADRFSFVEERILLYDRASQPAAPGQMRSNRAHEYALLARH 240 Query: 239 LPHAIDTEQTLAVLQALQLAHPGFVLYGSFARWLQDLPLPQAPADADLLLPDDPRLVAAV 298 LP IDT QTLAVLQA+Q AHPGFV+YGSFARWLQ LPL APADADLLLPDDP+L+ A+ Sbjct: 241 LPPPIDTAQTLAVLQAMQSAHPGFVVYGSFARWLQGLPLAHAPADADLLLPDDPQLLVAL 300 Query: 299 CHWLEQQGFALTCWGAPFSAAMAGPAAAVLPERHYLRAVRLNRAGRQVRLDLCLRDAQHD 358 CHWLEQQGFALTCWGAPFSAAMA AA+LP+RHYLRAVRL+R GR VRLDLCLRD +HD Sbjct: 301 CHWLEQQGFALTCWGAPFSAAMAAAGAALLPQRHYLRAVRLDRDGRLVRLDLCLRDQRHD 360 Query: 359 VATVLPHAVFRHGLPLMPPALLQ 381 A +LP AV + GLPLMP L+Q Sbjct: 361 AAQLLPQAVMQAGLPLMPAELVQ 383 >ref|ZP_08177376.1| DNA methylase [Xanthomonas vesicatoria ATCC 35937] gb|EGD10412.1| DNA methylase [Xanthomonas vesicatoria ATCC 35937] Length = 357 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 2 NDNSWLHLSRQDPAWTLPQELAETDPFGARDCGWVEQMQPFIAHLCPPDGKVLDPFCGFG 61 + SW + AW LP +L +DP RDCGWV QM+PF+ H P +V DPFCGFG Sbjct: 8 DQRSWWTPVPDEAAWALPDDLRASDPLNGRDCGWVNQMRPFVRHFSQPGEQVFDPFCGFG 67 Query: 62 STLVAAHSVGRAGIGIEIDGQRVALTRQRLQRLGADGPPQQVLQGDATALAHSLP--PVD 119 STL+AA GR G+EID R L R RLQR G D P ++ G+ L H+ P P+D Sbjct: 68 STLLAAALEGRNAHGMEIDPARAQLARTRLQRHGVDAP---IVVGN---LVHATPVAPID 121 Query: 120 LVLSNVPYFGCQWPDASDAAHAGQLYASQTYAGFLGMLERLLRALRDCLRPGGWLVLCAE 179 L L+NVPYFGCQW AA AGQLYAS YAG+L + + ALR LRPG + V E Sbjct: 122 LCLTNVPYFGCQW---RGAAVAGQLYASTDYAGYLAGMRAVFHALRRQLRPGAFGVAMVE 178 Query: 180 NLRVGEQFVPLAWDLARLMADRFRFVEERILVYDRASTSETPGQLRSNRSHEYALIARHL 239 N+RVG + +P AWDL R++ F +ER+L Y R + SNRSHEYALI +H Sbjct: 179 NVRVGGRVIPQAWDLGRILGSLFTLHDERVLCYPRPAAGLNHAGTDSNRSHEYALIFQHC 238 Query: 240 PHAIDTEQTLAVLQALQLAHPGFVLYGSFARWLQDLPL-PQAPADADLLLPDDPRLVAAV 298 +D +Q +L A+Q V++GS+ARWLQ L PQ PAD DL++ + L + Sbjct: 239 RARLDVQQAEQLLHAVQALGVPVVVHGSYARWLQSPALVPQGPADLDLIVCAEQPLWDRL 298 Query: 299 CHWLEQQGFALTCWGAPFSAAMAGPAAAVLPERHYLRAVRLNRAGRQVRLDLCL 352 +WL+ QGF+L+ WG P A + A + HYLRA R+ G +++DL L Sbjct: 299 TNWLQVQGFSLSLWGEPCRAPV---TLAAVRAHHYLRAERVGADGSHLQVDLQL 349 >ref|ZP_08185331.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865] gb|EGD17033.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865] Length = 354 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 161/353 (45%), Positives = 209/353 (59%), Gaps = 11/353 (3%) Query: 1 MNDNSWLHLSRQDPAWTLPQELAETDPFGARDCGWVEQMQPFIAHLCPPDGKVLDPFCGF 60 ++ +SW + +PAW LP +L DP G RDCGWV QM+PF+ H P +V DPFCGF Sbjct: 4 LDQHSWWTPTPDNPAWALPDDLCAADPLGGRDCGWVNQMRPFVRHFSAPGEQVFDPFCGF 63 Query: 61 GSTLVAAHSVGRAGIGIEIDGQRVALTRQRLQRLGADGPPQQVLQGDATALAHSLPPVDL 120 GSTL+AA GR G+EID R L R RLQR G P V+ G A + +DL Sbjct: 64 GSTLLAAAMEGRNAHGMEIDPARAHLARTRLQRHGVHAP---VVVGSLVDTAPA-AAIDL 119 Query: 121 VLSNVPYFGCQWPDASDAAHAGQLYASQTYAGFLGMLERLLRALRDCLRPGGWLVLCAEN 180 L++VPYFGC W A GQLYAS YAG+L + +L ALR LRP G+ V EN Sbjct: 120 CLTSVPYFGCHW---RGEALPGQLYASADYAGYLSGMRAVLHALRKRLRPDGFGVAMVEN 176 Query: 181 LRVGEQFVPLAWDLARLMADRFRFVEERILVYDRASTSETPGQLRSNRSHEYALIARHLP 240 + VG + +P AWDL R++A F EER+L Y R + T +SNRSHEYALI +H Sbjct: 177 VAVGGRVIPQAWDLGRILASLFTLREERVLCYQRPGAALTHAGTQSNRSHEYALIFQHCR 236 Query: 241 HAIDTEQTLAVLQALQLAHPGFVLYGSFARWLQDLPL-PQAPADADLLLPDDPRLVAAVC 299 +D +Q +LQA++ V++GS+ARWL+ L PQAPAD DL+L + L Sbjct: 237 PRLDLQQAAQLLQAVRAQGLPVVVHGSYARWLESPDLVPQAPADLDLILQAEQPLWDRFT 296 Query: 300 HWLEQQGFALTCWGAPFSAAMAGPAAAVLPERHYLRAVRLNRAGRQVRLDLCL 352 WL+ QGFAL+ WG P A + A A + HYLRA R+ G +++LDL L Sbjct: 297 GWLQAQGFALSLWGEPCRAPV---ALAAVRAHHYLRAERIGADGSRLQLDLQL 346 >ref|YP_001902158.1| putative methyltransferase [Xanthomonas campestris pv. campestris str. B100] emb|CAP50092.1| putative methyltransferase [Xanthomonas campestris pv. campestris] Length = 354 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 204/354 (57%), Gaps = 15/354 (4%) Query: 2 NDNSWLHLSRQDPAWTLPQELAETDPFGARDCGWVEQMQPFIAHLCPPDGKVLDPFCGFG 61 + SW + DPAW LP +L DP RDCGWV QM+PF+ H +V DPFCGFG Sbjct: 5 DQRSWWTPAPDDPAWALPDDLRAADPLHGRDCGWVNQMRPFVRHFSARGQQVFDPFCGFG 64 Query: 62 STLVAAHSVGRAGIGIEIDGQRVALTRQRLQRLGADGPPQQVLQGDATALAHSLP--PVD 119 STL+AA GR G+EID R + R+RL+R P V+ G LA P PVD Sbjct: 65 STLLAAALEGRQAHGMEIDPARAVVARERLRRHAVQAP---VVVG---GLAQVPPAAPVD 118 Query: 120 LVLSNVPYFGCQWPDASDAAHAGQLYASQTYAGFLGMLERLLRALRDCLRPGGWLVLCAE 179 L L+NVPYFGC W S GQLYAS YA +L L + ALR LRPGG+ V E Sbjct: 119 LCLTNVPYFGCHW---SGQVAPGQLYASTDYASYLAGLRAVFHALRRQLRPGGFGVAMVE 175 Query: 180 NLRVGEQFVPLAWDLARLMADRFRFVEERILVYDRASTSETPGQLRSNRSHEYALIARHL 239 N+ + Q VP AWDL R+++ F EER+L Y RA G S+RSHEYALI +H Sbjct: 176 NVVLDGQLVPQAWDLGRILSSLFTLREERVLCYPRAGGVLAQGDTASDRSHEYALIFQHC 235 Query: 240 PHAIDTEQTLAVLQALQLAHPGFVLYGSFARWLQ-DLPLPQAPADADLLLPDDPRLVAAV 298 +D + +LQAL+ L+GS+ARWLQ +P PAD DL +P + + + Sbjct: 236 RSRLDLQAASQLLQALREQGLPVTLHGSYARWLQAPEQVPDGPADLDLTVPGEQAVWDRL 295 Query: 299 CHWLEQQGFALTCWGAPFSAAMAGPAAAVLPERHYLRAVRLNRAGRQVRLDLCL 352 HWL QGFAL+ WGAP A+ A++ HYLRA RL+ GR++++DL L Sbjct: 296 THWLHAQGFALSLWGAPCLPAV---PLAMVAAHHYLRAERLDADGRRLQVDLQL 346 >ref|NP_638789.1| hypothetical protein XCC3443 [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_241819.1| hypothetical protein XC_0721 [Xanthomonas campestris pv. campestris str. 8004] gb|AAM42713.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY47799.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 354 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 204/354 (57%), Gaps = 15/354 (4%) Query: 2 NDNSWLHLSRQDPAWTLPQELAETDPFGARDCGWVEQMQPFIAHLCPPDGKVLDPFCGFG 61 + SW + DPAW LP +L DP RDCGWV QM+PF+ H P +V DPFCGFG Sbjct: 5 DQRSWWTPAPDDPAWALPDDLRAADPLHGRDCGWVNQMRPFVRHFSAPGQQVFDPFCGFG 64 Query: 62 STLVAAHSVGRAGIGIEIDGQRVALTRQRLQRLGADGPPQQVLQGDATALAHSLP--PVD 119 STL+AA GR G+E+D R + R+RL+R P V+ G LA P PVD Sbjct: 65 STLLAAALEGRQAHGMEVDPARAVVARERLRRHAVQAP---VVVG---GLAQVPPAAPVD 118 Query: 120 LVLSNVPYFGCQWPDASDAAHAGQLYASQTYAGFLGMLERLLRALRDCLRPGGWLVLCAE 179 L L+NVPYFGC W S GQLYAS YA +L L + ALR LRPGG+ V E Sbjct: 119 LCLTNVPYFGCHW---SGPVAPGQLYASTDYASYLAGLRAVFHALRRQLRPGGFGVAMVE 175 Query: 180 NLRVGEQFVPLAWDLARLMADRFRFVEERILVYDRASTSETPGQLRSNRSHEYALIARHL 239 N+ + Q VP AWDL R+++ F EER+L Y RA SNRSHEYALI +H Sbjct: 176 NVVLDGQLVPQAWDLGRILSSLFTLREERVLCYPRAGGVLAQRGTASNRSHEYALIFQHC 235 Query: 240 PHAIDTEQTLAVLQALQLAHPGFVLYGSFARWLQ-DLPLPQAPADADLLLPDDPRLVAAV 298 +D + +LQAL+ +GS+ARWLQ +P PAD DL++P + + + Sbjct: 236 RTRLDLQAAAQLLQALREQGLPVTPHGSYARWLQAPEQVPDGPADLDLIVPGEQAVWDRL 295 Query: 299 CHWLEQQGFALTCWGAPFSAAMAGPAAAVLPERHYLRAVRLNRAGRQVRLDLCL 352 HWL QGFAL+ WGAP A+ A++ HYLRA RL+ GR++++DL L Sbjct: 296 SHWLHAQGFALSLWGAPCLPAV---PLAMVAAHHYLRAERLDADGRRLQVDLQL 346