BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3962.p (353 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777946.1| LysR family transcription regulator protein ... 585 e-165 ref|ZP_08274374.1| transcriptional regulator, LysR family [Oxalo... 289 6e-76 ref|YP_003777245.1| transcription regulator protein [Herbaspiril... 289 6e-76 ref|YP_004754630.1| LysR family transcriptional regulator [Colli... 283 4e-74 ref|YP_004229482.1| LysR family transcriptional regulator [Burkh... 281 2e-73 >ref|YP_003777946.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66038.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 297/310 (95%), Positives = 304/310 (98%) Query: 42 MEIKWVEDFLSVVDTLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 101 MEIKWVEDFLSVV+TLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLT A Sbjct: 1 MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60 Query: 102 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSVRFAMPHTLLLTVFPKLLSEIEKTIGAI 161 GESFVPIAKEMLNQSMQARLVLRGQLAGAQS+VR AMPHTLLLTVFPKLLSEIEK+IGAI Sbjct: 61 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSAVRLAMPHTLLLTVFPKLLSEIEKSIGAI 120 Query: 162 ATTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKTLPS 221 +TTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERY VLSLGKEPLRPYVKTLP+ Sbjct: 121 STTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYDVLSLGKEPLRPYVKTLPN 180 Query: 222 GQPKYVLPGTPNDPQPFLSYSPYSSLSRIVEKALHSSPRRVHLFRRFETDLAEGLKSMAV 281 G PKYVLPG PNDPQPFLSYSPYSSLSRIVEKALHSSPR+VHLFRRFETDLAEGLKSMAV Sbjct: 181 GLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHSSPRQVHLFRRFETDLAEGLKSMAV 240 Query: 282 EGHGIAWLPASAVSREIAEGKLTLAIAPNDSEALEQGLWCDEMDIRVYRRLDGANPDIDR 341 EGHGIAWLPASAV+REIAEGKLTLAIAP DSEALEQGLWCDEMDIRVYRRLDGANPDIDR Sbjct: 241 EGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQGLWCDEMDIRVYRRLDGANPDIDR 300 Query: 342 IWNYLKAEHG 351 IWNYLKAEHG Sbjct: 301 IWNYLKAEHG 310 >ref|ZP_08274374.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32152.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 324 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 156/309 (50%), Positives = 206/309 (66%), Gaps = 11/309 (3%) Query: 42 MEIKWVEDFLSVVDTLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 101 ME KW+EDFLS+ +T +FSRSA+LR+VTQPAF RRI+SLE WLGA+L DR+SYP LTPA Sbjct: 1 METKWLEDFLSLAETRSFSRSAQLRHVTQPAFSRRIQSLEAWLGADLIDRTSYPTRLTPA 60 Query: 102 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSVRFAMPHTLLLTVFPKLLSEIEKTIGAI 161 GE F A EML Q AR +LRG+ AQ++V FA+PHTL LT PK ++ ++ G I Sbjct: 61 GEIFYEQAMEMLGQINNARALLRGKRPAAQTTVDFAVPHTLSLTYMPKWMTALDADFGPI 120 Query: 162 ATTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKTLPS 221 T +MA NVHDAVM++VE CDLLLCY H +Q + LD+ RY +L LG E L PY + + Sbjct: 121 NTRLMALNVHDAVMSMVEGGCDLLLCYHHPRQPVQLDSARYDMLVLGAESLCPYARCDRT 180 Query: 222 GQPKYVLPGTPNDPQPFLSYSPYSSLSRIVEKALHSSPRRVHLFRRFETDLAEGLKSMAV 281 G P +VLPG+ P PFLSY+ + L R+VE L + +HL + +ETD+AEGLK MA+ Sbjct: 181 GVPDFVLPGSALAPLPFLSYTTNAYLGRMVELILADAKHPLHLQKCYETDMAEGLKMMAL 240 Query: 282 EGHGIAWLPASAVSREIAEGKLTLAIAPNDSEALEQGLWCDEMDIRVYRRLDG----ANP 337 EG G+ +LP S+V+RE+ + +L A Q W EM+IR+YR P Sbjct: 241 EGRGVVFLPESSVTRELRQKQLARADG-------GQPEWQVEMEIRLYREKPSVGRPGKP 293 Query: 338 DIDRIWNYL 346 + R+W+YL Sbjct: 294 LVGRLWDYL 302 >ref|YP_003777245.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65337.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 153/309 (49%), Positives = 204/309 (66%), Gaps = 11/309 (3%) Query: 42 MEIKWVEDFLSVVDTLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 101 ME KW+EDF+S+ +T +FSRSA+LR+VTQPAF RRI+SLE WLG +L DR+SYP LT A Sbjct: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 Query: 102 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSVRFAMPHTLLLTVFPKLLSEIEKTIGAI 161 GE F A ML Q R +LRG+ AQ+++ FA+PHTL LT PK LS +E GAI Sbjct: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 Query: 162 ATTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKTLPS 221 T ++A NVHDAVM +VE CDLLLCY H +Q + LD+ RY +L++G E LRPY + + Sbjct: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 Query: 222 GQPKYVLPGTPNDPQPFLSYSPYSSLSRIVEKALHSSPRRVHLFRRFETDLAEGLKSMAV 281 G+P YV PG+ P PFLSY+ + L R+VE + + R +HL + +ETD++E LK MA+ Sbjct: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 Query: 282 EGHGIAWLPASAVSREIAEGKLTLAIAPNDSEALEQGLWCDEMDIRVYRRLDGANPD--- 338 EGHG+A+LP S+V RE+ +L P+ G W EM+IR+YR A Sbjct: 241 EGHGVAFLPESSVVREVRNRQLARTDVPS-------GEWEVEMEIRLYRERPTAQRAGKA 293 Query: 339 -IDRIWNYL 346 + R+W YL Sbjct: 294 LVARLWEYL 302 >ref|YP_004754630.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AAT42433.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63807.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 356 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 153/309 (49%), Positives = 204/309 (66%), Gaps = 8/309 (2%) Query: 42 MEIKWVEDFLSVVDTLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 101 ME KW+EDF+S+ +T +FSRSA+LR+VTQPAF RRI+SLE WLGA+L DR+SYP LT A Sbjct: 24 MESKWLEDFISLAETHSFSRSAELRHVTQPAFSRRIQSLEAWLGADLIDRTSYPTRLTAA 83 Query: 102 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSVRFAMPHTLLLTVFPKLLSEIEKTIGAI 161 GE F A EML Q AR ++RG+ A S+V FA+PHTL LT P+ + +E G + Sbjct: 84 GEVFYEQALEMLGQINNARALMRGKRPTALSTVDFAVPHTLSLTYVPRWIRLLEDGFGPL 143 Query: 162 ATTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKTLPS 221 T ++A NVHDAVMA+V+ CDLLLCY H +Q + LDT RY +++LG E LR Y + Sbjct: 144 NTRLLALNVHDAVMAMVDGGCDLLLCYHHPRQPVQLDTGRYDLITLGSEVLRAYAHCNKA 203 Query: 222 GQPKYVLPGTPNDPQPFLSYSPYSSLSRIVEKALHSSPRRVHLFRRFETDLAEGLKSMAV 281 G P YV PG+ P PFLSY+ + L R+VE L + + ++L +R+ETD+AEGLK MA+ Sbjct: 204 GVPDYVFPGSAGAPLPFLSYTSNAYLGRMVELILADAKKPLYLEKRYETDMAEGLKMMAL 263 Query: 282 EGHGIAWLPASAVSREIAEGKLTLAIAPNDSEALEQGLWCDEMDIRVYRRLDG----ANP 337 EGHG+A+LP SAV+RE+ +L +DS W M+IR+YR P Sbjct: 264 EGHGVAFLPESAVTREVKLKQLARVDRIDDSAP----EWEATMEIRLYRERPTVQRPGKP 319 Query: 338 DIDRIWNYL 346 + R+W YL Sbjct: 320 VVARLWAYL 328 >ref|YP_004229482.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX56422.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 318 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 151/318 (47%), Positives = 209/318 (65%), Gaps = 10/318 (3%) Query: 42 MEIKWVEDFLSVVDTLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 101 ME+KW+EDF+S+ +T +FSRSA+LR+VTQPAF RRI++LE WLG EL DRS YP LTPA Sbjct: 1 MELKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQALEAWLGTELIDRSVYPTRLTPA 60 Query: 102 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSVRFAMPHTLLLTVFPKLLSEIEKTIGAI 161 G+ F A ML+Q +AR +LRG A Q+++ FA+PHTL LT FP+ L IE +G I Sbjct: 61 GQVFNEQALAMLSQFHEARALLRGHTATPQATIEFAVPHTLSLTYFPRWLQRIEAQMGPI 120 Query: 162 ATTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKTLPS 221 T + A NVHDA ++LVE CDL++ Y H +ALD RY +L+LG EP+ P+ + Sbjct: 121 HTRLRALNVHDAALSLVEGGCDLMMGYHHPSHPVALDPGRYDMLTLGNEPISPFSAPGRA 180 Query: 222 GQPKYVLPGTPNDPQPFLSYSPYSSLSRIVEKALHSSPRRVHLFRRFETDLAEGLKSMAV 281 G+P++ LPGT P P+LSY+P + L R+ E L ++P R++L R +ETD+AEGLK+MA+ Sbjct: 181 GRPRHTLPGTAEAPTPYLSYTPNAYLGRMTEVILANAPERLYLDRLYETDMAEGLKAMAL 240 Query: 282 EGHGIAWLPASAVSREIAEGKLTLAIAPNDSEALEQGLWCDEMDIRVYRRLDGANPD--- 338 GHGIA+LP SAV +A+GKL + +G M+IR+YR A D Sbjct: 241 AGHGIAFLPHSAVEDAVADGKLIR--LDRATRGTPEGQLTLTMEIRLYRDKLAAKSDDAR 298 Query: 339 ---IDRIWNYLKAE--HG 351 + ++W+ + E HG Sbjct: 299 QILVRQLWDVVSEELAHG 316